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Ali Bashashati

Active 2004–2026

84
Papers
18,310
Citations
44
h-index
60
i10-index

Citations

Citations per year for Ali Bashashati1961: 1 citations1981: 1 citations1990: 1 citations1991: 1 citations1998: 1 citations2000: 1 citations2001: 1 citations2004: 2 citations2005: 6 citations2006: 17 citations2007: 38 citations2008: 43 citations2009: 40 citations2010: 74 citations2011: 80 citations2012: 157 citations2013: 310 citations2014: 342 citations2015: 397 citations2016: 377 citations2017: 366 citations2018: 402 citations2019: 835 citations2020: 990 citations2021: 882 citations2022: 726 citations2023: 516 citations2024: 756 citations2025: 425 citations2026: 53 citations1962–1980: no citations, so these years are not shown1982–1989: no citations, so these years are not shown1992–1997: no citations, so these years are not shown1999: no citations, so this year is not shown2002–2003: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,876 citing papers, 23.4% of this breakdownChina: 1,294 citing papers, 10.5% of this breakdownUnited Kingdom: 1,019 citing papers, 8.3% of this breakdownCanada: 747 citing papers, 6.1% of this breakdownItaly: 510 citing papers, 4.1% of this breakdownGermany: 486 citing papers, 4% of this breakdownFrance: 428 citing papers, 3.5% of this breakdownAustralia: 411 citing papers, 3.3% of this breakdownSpain: 368 citing papers, 3% of this breakdownJapan: 317 citing papers, 2.6% of this breakdownNetherlands: 273 citing papers, 2.2% of this breakdownSwitzerland: 234 citing papers, 1.9% of this breakdown
0%23.4%Other 27.1%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology44.2%
  • Medicine29.7%
  • Neuroscience13.6%
  • Computer Science6.1%
  • Immunology and Microbiology3.4%
  • Engineering0.8%
  • Other2.2%

Topics

  • Cancer Genomics and Diagnostics7.1%
  • EEG and Brain-Computer Interfaces4.7%
  • Cancer Cells and Metastasis2.9%
  • Gene expression and cancer classification2.5%
  • Single-cell and spatial transcriptomics2.5%
  • Bioinformatics and Genomic Networks2.3%
  • Other78%

Coauthors

All papers

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  1. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

    Authors: METABRIC Group, Christina Curtis, Sohrab P. Shah, Suet‐Feung Chin, Gulisa Turashvili, Oscar M. Rueda, Mark Dunning, Doug Speed, Andy G. Lynch, Shamith Samarajiwa, Yinyin Yuan, Stefan Gräf, Gavin Ha, Gholamreza Haffari, Ali Bashashati, Roslin Russell, Steven McKinney, Anita Langerød, Andrew R. Green, Elena Provenzano, Gordon Wishart, Sarah E. Pinder, Peter H. Watson, Florian Markowetz, Leigh C. Murphy, Ian O. Ellis, Arnie Purushotham, Anne‐Lise Børresen‐Dale, James D. Brenton, Simon Tavaré, Carlos Caldas, Samuel Aparício - Nature 2012 cited by 6,460

  2. The clonal and mutational evolution spectrum of primary triple-negative breast cancers

    Authors: Sohrab P. Shah, Andrew Roth, Rodrigo Goya, Arusha Oloumi, Gavin Ha, Yongjun Zhao, Gulisa Turashvili, Jiarui Ding, Kane Tse, Gholamreza Haffari, Ali Bashashati, Leah Prentice, Jaswinder Khattra, Angela Burleigh, Damian Yap, Virginie Bernard, Andrew McPherson, Karey Shumansky, Anamaria Crisan, Ryan Giuliany, Alireza Heravi‐Moussavi, Jamie Rosner, Daniel Lai, İnanç Birol, Richard Varhol, Angela Tam, Noreen Dhalla, Thomas Zeng, Kevin Ma, Simon K. Chan, Malachi Griffith, Annie Moradian, Siwei Cheng, Gregg B. Morin, Peter H. Watson, Karen A. Gelmon, Stephen Chia, Suet‐Feung Chin, Christina Curtis, Oscar M. Rueda, Paul D.P. Pharoah, Sambasivarao Damaraju, John R. Mackey, Kelly Hoon, Timothy T. Harkins, Vasisht Tadigotla, Mahvash Sigaroudinia, Philippe Gascard, Thea D. Tlsty, J Costello, Irmtraud M. Meyer, Connie J. Eaves, Wyeth W. Wasserman, Steven J.M. Jones, David G. Huntsman, Martin Hirst, Carlos Caldas, Marco A. Marra, Samuel Aparício - Nature 2012 cited by 2,036

  3. Double-Hit Gene Expression Signature Defines a Distinct Subgroup of Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma

    Authors: Daisuke Ennishi, Aixiang Jiang, Merrill Boyle, Brett Collinge, Bruno M. Grande, Susana Ben‐Neriah, Christopher Rushton, Jeffrey Tang, Nicole Thomas, Graham W. Slack, Pedro Farinha, Katsuyoshi Takata, Tomoko Miyata‐Takata, Jeffrey W. Craig, Anja Mottok, Barbara Meissner, Saeed Saberi, Ali Bashashati, Diego Villa, Kerry J. Savage, Laurie H. Sehn, Robert Kridel, Andrew J. Mungall, Marco A. Marra, Sohrab P. Shah, Christian Steidl, Joseph M. Connors, Randy D. Gascoyne, Ryan D. Morin, David W. Scott - Journal of Clinical Oncology 2018 cited by 420

  4. Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition

    Authors: Daisuke Ennishi, Katsuyoshi Takata, Wendy Béguelin, Gerben Duns, Anja Mottok, Pedro Farinha, Ali Bashashati, Saeed Saberi, Merrill Boyle, Barbara Meissner, Susana Ben‐Neriah, Bruce W. Woolcock, Adèle Telenius, Daniel Lai, Matt Teater, Robert Kridel, Kerry J. Savage, Laurie H. Sehn, Ryan D. Morin, Marco A. Marra, Sohrab P. Shah, Joseph M. Connors, Randy D. Gascoyne, David W. Scott, Ari Melnick, Christian Steidl - Cancer Discovery 2019 cited by 316

  5. Synthesis of diagnostic quality cancer pathology images by generative adversarial networks

    Authors: Adrian Levine, Jason Peng, David Farnell, Mitchell Nursey, Yiping Wang, Julia Naso, Hezhen Ren, Hossein Farahani, Colin Chen, Derek S. Chiu, Aline Talhouk, Brandon S. Sheffield, Maziar Riazy, Philip P.C. Ip, Carlos Parra‐Herran, Anne M. Mills, Naveena Singh, Basile Tessier‐Cloutier, Taylor Salisbury, Jonathan Lee, Tim Salcudean, Steven J.M. Jones, David G. Huntsman, C. Blake Gilks, Stephen Yip, Ali Bashashati - The Journal of Pathology 2020 cited by 123

  6. Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer

    Authors: Allen W. Zhang, Andrew McPherson, Katy Milne, David R. Kroeger, Phineas T. Hamilton, Alex Miranda, Tyler Funnell, Nicole S. Little, Camila P. E. de Souza, Sonya Laan, Stacey Ledoux, Dawn R. Cochrane, Jamie Lim, Winnie Yang, Andrew Roth, Maia A. Smith, Julie Ho, Kane Tse, Thomas Zeng, Inna Shlafman, Michael R. Mayo, Richard A. Moore, Henrik Failmezger, Andreas Heindl, Yi Kan Wang, Ali Bashashati, Diljot Grewal, Scott D. Brown, Daniel Lai, Adrian Wan, Cydney Nielsen, Curtis Huebner, Basile Tessier‐Cloutier, Michael S. Anglesio, Alexandre Bouchard‐Côté, Yinyin Yuan, Wyeth W. Wasserman, C. Blake Gilks, Anthony N. Karnezis, Samuel Aparício, Jessica N. McAlpine, David G. Huntsman, Robert A. Holt, Brad H. Nelson, Sohrab P. Shah - Cell 2018 cited by 387

  7. Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images

    Authors: Hossein Farahani, Jeffrey Boschman, David Farnell, Amirali Darbandsari, Allen Zhang, Pouya Ahmadvand, Steven J.M. Jones, David G. Huntsman, Martin Köbel, C. Blake Gilks, Naveena Singh, Ali Bashashati - Modern Pathology 2022 cited by 85

  8. Regulation of pH by Carbonic Anhydrase 9 Mediates Survival of Pancreatic Cancer Cells With Activated KRAS in Response to Hypoxia

    Authors: Paul C. McDonald, Shawn C. Chafe, Wells S. Brown, Saeed Saberi, Mridula Swayampakula, Geetha Venkateswaran, Oksana Nemirovsky, Jordan Gillespie, Joanna M. Karasinska, Steve E. Kalloger, Claudiu T. Supuran, David F. Schaeffer, Ali Bashashati, Sohrab P. Shah, James T. Topham, Donald T. Yapp, Jinyang Li, Daniel J. Renouf, Ben Z. Stanger, Shoukat Dedhar - Gastroenterology 2019 cited by 232

  9. EMG and EOG artifacts in brain computer interface systems: A survey

    Authors: Mehrdad Fatourechi, Ali Bashashati, Rabab Ward, Gary E. Birch - Clinical Neurophysiology 2006 cited by 623

  10. TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

    Authors: Gavin Ha, Andrew Roth, Jaswinder Khattra, Julie Ho, Damian Yap, Leah Prentice, Nataliya Melnyk, Andrew McPherson, Ali Bashashati, Emma Laks, Justina Biele, Jiarui Ding, Alan Le, Jamie Rosner, Karey Shumansky, Marco A. Marra, C. Blake Gilks, David G. Huntsman, Jessica N. McAlpine, Samuel Aparício, Sohrab P. Shah - Genome Research 2014 cited by 429

  11. DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

    Authors: Ali Bashashati, Gholamreza Haffari, Jiarui Ding, Gavin Ha, Kenneth Lui, Jamie Rosner, David G. Huntsman, Carlos Caldas, Samuel Aparício, Sohrab P. Shah - Genome biology 2012 cited by 325

  12. The utility of color normalization for AI‐based diagnosis of hematoxylin and eosin‐stained pathology images

    Authors: Jeffrey Boschman, Hossein Farahani, Amirali Darbandsari, Pouya Ahmadvand, Ashley Van Spankeren, David Farnell, Adrian Levine, Julia Naso, Andrew Churg, Steven J.M. Jones, Stephen Yip, Martin Köbel, David G. Huntsman, C. Blake Gilks, Ali Bashashati - The Journal of Pathology 2021 cited by 62

  13. A survey of signal processing algorithms in brain–computer interfaces based on electrical brain signals

    Authors: Ali Bashashati, Mehrdad Fatourechi, Rabab Ward, Gary E. Birch - Journal of Neural Engineering 2007 cited by 898

  14. Targeting Hypoxia-Induced Carbonic Anhydrase IX Enhances Immune-Checkpoint Blockade Locally and Systemically

    Authors: Shawn C. Chafe, Paul C. McDonald, Saeed Saberi, Oksana Nemirovsky, Geetha Venkateswaran, Samantha Burugu, Dongxia Gao, Alberto Delaidelli, Alastair H. Kyle, Jennifer H.E. Baker, Jordan Gillespie, Ali Bashashati, Andrew I. Minchinton, Youwen Zhou, Sohrab P. Shah, Shoukat Dedhar - Cancer Immunology Research 2019 cited by 161

  15. Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study

    Authors: Robert Kridel, Fong Chun Chan, Anja Mottok, Merrill Boyle, Pedro Farinha, King Tan, Barbara Meissner, Ali Bashashati, Andrew McPherson, Andrew Roth, Karey Shumansky, Damian Yap, Susana Ben‐Neriah, Jamie Rosner, Maia A. Smith, Cydney Nielsen, Eva Giné, Adèle Telenius, Daisuke Ennishi, Andrew J. Mungall, Richard A. Moore, Ryan D. Morin, Nathalie A. Johnson, Laurie H. Sehn, Thomas Tousseyn, Ahmet Doǧan, Joseph M. Connors, David W. Scott, Christian Steidl, Marco A. Marra, Randy D. Gascoyne, Sohrab P. Shah - PLoS Medicine 2016 cited by 243

  16. Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes

    Authors: Yi Kan Wang, Ali Bashashati, Michael S. Anglesio, Dawn R. Cochrane, Diljot Grewal, Gavin Ha, Andrew McPherson, Hugo M. Horlings, Janine Senz, Leah Prentice, Anthony N. Karnezis, Daniel Lai, Mohamed Radhouane Aniba, Allen W. Zhang, Karey Shumansky, Celia Siu, Adrian Wan, Melissa K. McConechy, Hector Li-Chang, Alicia Tone, Diane Provencher, Manon de Ladurantaye, Hubert Fleury, Aikou Okamoto, Satoshi Yanagida, Nozomu Yanaihara, Misato Saito, Andrew J. Mungall, Richard A. Moore, Marco A. Marra, C. Blake Gilks, Anne‐Marie Mes‐Masson, Jessica N. McAlpine, Samuel Aparício, David G. Huntsman, Sohrab P. Shah - Nature Genetics 2017 cited by 290

  17. Sparse Multi-Modal Graph Transformer with Shared-Context Processing for Representation Learning of Giga-pixel Images

    Authors: Ramin Nakhli, Puria Azadi Moghadam, Haoyang Mi, Hossein Farahani, Alexander Baras, C. Blake Gilks, Ali Bashashati - IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) 2023 cited by 29

  18. Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

    Authors: Peter Eirew, Adi Steif, Jaswinder Khattra, Gavin Ha, Damian Yap, Hossein Farahani, Karen A. Gelmon, Stephen Chia, Colin Mar, Adrian Wan, Emma Laks, Justina Biele, Karey Shumansky, Jamie Rosner, Andrew McPherson, Cydney Nielsen, Andrew Roth, Calvin Lefebvre, Ali Bashashati, Camila P. E. de Souza, Celia Siu, Radhouane Aniba, Jazmine Brimhall, Arusha Oloumi, Tomo Osako, Alejandra Bruna, José Luís Sandoval, Teresa Ruiz de Algara, Wendy Greenwood, Kaston Leung, Hongwei Cheng, Hui Xue, Yuzhuo Wang, Dong Lin, Andrew J. Mungall, Richard A. Moore, Yongjun Zhao, Julie Lorette, Long Nguyen, David G. Huntsman, Connie J. Eaves, Carl L. Hansen, Marco A. Marra, Carlos Caldas, Sohrab P. Shah, Samuel Aparício - Nature 2014 cited by 642

  19. Learning generalizable AI models for multi-center histopathology image classification

    Authors: Maryam Asadi-Aghbolaghi, Amirali Darbandsari, Allen Zhang, Alberto Contreras‐Sanz, Jeffrey Boschman, Pouya Ahmadvand, Martin Köbel, David Farnell, David G. Huntsman, Andrew Churg, Peter C. Black, Gang Wang, C. Blake Gilks, Hossein Farahani, Ali Bashashati - npj Precision Oncology 2024 cited by 45

  20. Synchronous Endometrial and Ovarian Carcinomas: Evidence of Clonality

    Authors: Michael S. Anglesio, Yi Kan Wang, Madlen Maassen, Hugo M. Horlings, Ali Bashashati, Janine Senz, Robertson Mackenzie, Diljot Grewal, Hector Li-Chang, Anthony N. Karnezis, Brandon S. Sheffield, Melissa K. McConechy, Friedrich Kommoss, Florin‐Andrei Taran, Annette Staebler, Sohrab P. Shah, D. Wallwiener, Sara Y. Brucker, C. Blake Gilks, Stefan Kommoss, David G. Huntsman - JNCI Journal of the National Cancer Institute 2015 cited by 228

  21. Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer

    Authors: Andrew McPherson, Andrew Roth, Emma Laks, Tehmina Masud, Ali Bashashati, Allen W. Zhang, Gavin Ha, Justina Biele, Damian Yap, Adrian Wan, Leah Prentice, Jaswinder Khattra, Maia A. Smith, Cydney Nielsen, Sarah C. Mullaly, Steve E. Kalloger, Anthony N. Karnezis, Karey Shumansky, Celia Siu, Jamie Rosner, Hector Li Chan, Julie Ho, Nataliya Melnyk, Janine Senz, Winnie Yang, Richard A. Moore, Andrew J. Mungall, Marco A. Marra, Alexandre Bouchard‐Côté, C. Blake Gilks, David G. Huntsman, Jessica N. McAlpine, Samuel Aparício, Sohrab P. Shah - Nature Genetics 2016 cited by 367

  22. Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

    Authors: Gavin Ha, Andrew Roth, Daniel Lai, Ali Bashashati, Jiarui Ding, Rodrigo Goya, Ryan Giuliany, Jamie Rosner, Arusha Oloumi, Karey Shumansky, Suet‐Feung Chin, Gulisa Turashvili, Martin Hirst, Carlos Caldas, Marco A. Marra, Samuel Aparício, Sohrab P. Shah - Genome Research 2012 cited by 294

  23. Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden

    Authors: Michael S. Anglesio, Ali Bashashati, Yi Kan Wang, Janine Senz, Gavin Ha, Winnie Yang, Mohamed Radhouane Aniba, Leah Prentice, Hossein Farahani, Hector Li Chang, Anthony N. Karnezis, Marco A. Marra, Paul J. Yong, Martin Hirst, C. Blake Gilks, Sohrab P. Shah, David G. Huntsman - The Journal of Pathology 2015 cited by 188

  24. AI-based histopathology image analysis reveals a distinct subset of endometrial cancers

    Authors: Amirali Darbandsari, Hossein Farahani, Maryam Asadi, Matthew O. Wiens, Dawn R. Cochrane, Ali Khajegili Mirabadi, Amy Jamieson, David Farnell, Pouya Ahmadvand, Maxwell Douglas, Samuel Leung, Purang Abolmaesumi, Steven J.M. Jones, Aline Talhouk, Stefan Kommoss, C. Blake Gilks, David G. Huntsman, Naveena Singh, Jessica N. McAlpine, Ali Bashashati - Nature Communications 2024 cited by 35