Charles Y. Chiu
Active 1987–2025
- 150
- Papers
- 27,549
- Citations
- 84
- h-index
- 142
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Medicine54.1%
- Biochemistry, Genetics and Molecular Biology27.9%
- Immunology and Microbiology4.5%
- Engineering4.1%
- Environmental Science2.8%
- Agricultural and Biological Sciences2.4%
- Other4.2%
Topics
- SARS-CoV-2 and COVID-19 Research8.2%
- SARS-CoV-2 detection and testing5.9%
- Biosensors and Analytical Detection4.2%
- COVID-19 Clinical Research Studies3.7%
- Advanced biosensing and bioanalysis techniques3.6%
- CRISPR and Genetic Engineering3.4%
- Other71%
Coauthors
- Steve Miller39
- Venice Servellita38
- Scot Federman30
- Joseph L. DeRisi25
- Michael R. Wilson23
- Alicia Sotomayor-González21
- Guixia Yu21
- Alexander L. Greninger18
- Samia N. Naccache18
- Xianding Deng15
- Shigeo Yagi14
- Wei Gu13
- Kelsey C. Zorn12
- Debra A. Wadford11
- John Hackett11
- Noah Brazer11
- Sneha Somasekar11
- Allan Gopez10
- Doug Stryke10
- Elaine Hsu10
- Jérôme Bouquet10
- Mars Stone10
- Miguel Garcia-Knight10
- Amelia S. Gliwa9
All papers
- CRISPR–Cas12-based detection of SARS-CoV-2
Authors: James P. Broughton, Xianding Deng, Guixia Yu, Clare L. Fasching, Venice Servellita, Jasmeet Singh, Xin Miao, Jessica Streithorst, Andrea Granados, Alicia Sotomayor-González, Kelsey C. Zorn, Allan Gopez, Elaine Hsu, Wei Gu, Steve Miller, Chao‐Yang Pan, Hugo Guevara, Debra A. Wadford, Janice S. Chen, Charles Y. Chiu - Nature Biotechnology 2020 cited by 2,799
- Clinical metagenomics
Authors: Charles Y. Chiu, Steven A. Miller - Nature Reviews Genetics 2019 cited by 1,580
- Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection
Authors: Wei Gu, Steve Miller, Charles Y. Chiu - Annual Review of Pathology Mechanisms of Disease 2018 cited by 1,436
- Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids
Authors: Wei Gu, Xianding Deng, Marco Lee, Yasemin Sucu, Shaun Arevalo, Doug Stryke, Scot Federman, Allan Gopez, Kevin Reyes, Kelsey C. Zorn, Hannah A. Sample, Guixia Yu, Gurpreet Ishpuniani, Benjamin Briggs, Eric D. Chow, Amy Berger, Michael R. Wilson, Candace Wang, Elaine Hsu, Steve Miller, Joseph L. DeRisi, Charles Y. Chiu - Nature Medicine 2020 cited by 687
- Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis
Authors: Michael R. Wilson, Hannah A. Sample, Kelsey C. Zorn, Shaun Arevalo, Guixia Yu, John Neuhaus, Scot Federman, Doug Stryke, Benjamin Briggs, Charles Langelier, Amy Berger, Vanja C. Douglas, S. Andrew Josephson, Felicia C. Chow, Brent D. Fulton, Joseph L. DeRisi, Jeffrey M. Gelfand, Samia N. Naccache, Jeffrey M. Bender, Jennifer Dien Bard, Jamie A. Murkey, Magrit Carlson, Paul Vespa, Tara Vijayan, Paul R Allyn, Shelley Campeau, Romney M. Humphries, Jeffrey D. Klausner, Czarina D. Ganzon, Fatemeh Memar, Nicolle A. Ocampo, Lara Zimmermann, Stuart H. Cohen, Christopher R. Polage, Roberta L. DeBiasi, Barbara Haller, Ronald H. Dallas, Gabriela Marón, Randall T. Hayden, Kevin Messacar, Samuel R. Dominguez, Steve Miller, Charles Y. Chiu - New England Journal of Medicine 2019 cited by 1,047
- Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid
Authors: Steve Miller, Samia N. Naccache, Erik Samayoa, Kevin Messacar, Shaun Arevalo, Scot Federman, Doug Stryke, Elizabeth Pham, Becky Fung, William J. Bolosky, Danielle Ingebrigtsen, Walter Lorizio, Sandra M. Paff, John A. D. Leake, Rick L. Pesano, Roberta L. DeBiasi, Samuel R. Dominguez, Charles Y. Chiu - Genome Research 2019 cited by 579
- Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing
Authors: Michael R. Wilson, Samia N. Naccache, Erik Samayoa, Mark Biagtan, Hiba Bashir, Guixia Yu, Shahriar Salamat, Sneha Somasekar, Scot Federman, Steve Miller, Robert Sokolic, Elizabeth Garabedian, Fabio Candotti, Rebecca H. Buckley, Kurt D. Reed, Teresa Meyer, Christine M. Seroogy, Renee L. Galloway, Sheryl L. Henderson, James E. Gern, Joseph L. DeRisi, Charles Y. Chiu - New England Journal of Medicine 2014 cited by 1,030
- Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection
Authors: Robert Schlaberg, Charles Y. Chiu, Steve Miller, Gary W. Procop, George M. Weinstock - Archives of Pathology & Laboratory Medicine 2017 cited by 560
- Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults
Authors: Charles Langelier, Katrina Kalantar, Farzad Moazed, Michael R. Wilson, Emily Crawford, Thomas Deiss, Annika Belzer, Samaneh Bolourchi, Saharai Caldera, Monica Fung, Alejandra Jáuregui, Katherine Malcolm, Amy Lyden, Lillian M. Khan, Kathryn Vessel, Jenai Quan, Matt S. Zinter, Charles Y. Chiu, Eric D. Chow, Jenny L. Wilson, Steve Miller, Michael A. Matthay, Katherine S. Pollard, Stephanie A. Christenson, Carolyn S. Calfee, Joseph L. DeRisi - National Academy of Sciences, Proceedings of the National Academy of Sciences 2018 cited by 426
- The Role of Metagenomics and Next-Generation Sequencing in Infectious Disease Diagnosis
Authors: Steve Miller, Charles Y. Chiu - Clinical Chemistry 2021 cited by 161
- Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant
Authors: Xianding Deng, Miguel Garcia-Knight, Mir M. Khalid, Venice Servellita, Candace Wang, Mary Kate Morris, Alicia Sotomayor-González, Dustin R. Glasner, Kevin Reyes, Amelia S. Gliwa, Nikitha P. Reddy, Claudia Sanchez San Martin, Scot Federman, Jing Cheng, Joanna Balcerek, Jordan E. Taylor, Jessica Streithorst, Steve Miller, Bharath Sreekumar, Peiyi Chen, Ursula Schulze‐Gahmen, Taha Y. Taha, Jennifer M. Hayashi, Camille R. Simoneau, G. Renuka Kumar, Sarah McMahon, Peter V. Lidsky, Yinghong Xiao, Peera Hemarajata, Nicole M. Green, Alex Espinosa, Chantha Kath, Monica Haw, John Bell, Jill K. Hacker, Carl V. Hanson, Debra A. Wadford, Carlos Anaya, Donna Ferguson, Phillip A. Frankino, Haridha Shivram, Liana F. Lareau, Stacia K. Wyman, Mélanie Ott, Raul Andino, Charles Y. Chiu - Cell 2021 cited by 542
- Establishment and cryptic transmission of Zika virus in Brazil and the Americas
Authors: Nuno R. Faria, Josh Quick, Ingra Morales Claro, Julien Thézé, Jhennifer Guimarães Lourenço de Jesus, Marta Giovanetti, Moritz U. G. Kraemer, Sarah C. Hill, Allison Black, Antônio Charlys da Costa, L.C. Junqueira Franco, Serena Pocas Moreno Silva, Chieh‐Hsi Wu, Jayna Raghwani, Simon Cauchemez, Louis du Plessis, Mariana Pastorello Verotti, W. K. de Oliveira, Eduardo Hage Carmo, Giovanini Evelim Coelho, A. C. F. S. Santelli, Livia Vinhal, Cláudio Maierovitch Pessanha Henriques, Jared T. Simpson, Matthew Loose, Kristian G. Andersen, Nathan D. Grubaugh, Sneha Somasekar, Charles Y. Chiu, José Esteban Muñoz‐Medina, César González-Bonilla, Carlos F. Arias, Lia Laura Lewis‐Ximenez, Sally A. Baylis, Alexandre Chieppe, Shirlei Ferreira de Aguiar, Carlos Augusto Fernandes, P. S. Lemos, Bruna Laís Sena do Nascimento, H. A. O Monteiro, Isadora Cristina de Siqueira, Maria Gabriela de Queiroz, Themis Rocha de Souza, João Felipe Bezerra, Marisa Lemos, G. F. Pereira, D. Loudal, Lúcia Cristina Corrêa Moura, Rafael Dhália, R. F. França, Tereza Magalhães, Ernesto T. A. Marques, Thomas Jaenisch, Gabriel Luz Wallau, Magliones Carneiro de Lima, Valdinete Alves do Nascimento, Erenilde Marques de Cerqueira, Maricélia Maia de Lima, D. L. Mascarenhas, José Pereira de Moura Neto, Anna S. Levin, Tânia Regina Tozetto‐Mendoza, Sílvia Nunes Szente Fonseca, Maria Cássia Mendes-Corrêa, Flavio Augusto de Pádua Milagres, Aluísio Augusto Cotrim Segurado, Edward C. Holmes, Andrew Rambaut, Trevor Bedford, Márcio Roberto Teixeira Nunes, Éster Cerdeira Sabino, L. C. J. Alcantara, Nicholas J. Loman, Oliver G. Pybus - Nature, Nat. 2017 cited by 674
- Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections
Authors: Paula Hayakawa Serpa, Xianding Deng, Mazin Abdelghany, Emily Crawford, Katherine Malcolm, Saharai Caldera, Monica Fung, Aaron McGeever, Katrina Kalantar, Amy Lyden, Rajani Ghale, Thomas Deiss, Norma Neff, Steven A. Miller, Sarah B. Doernberg, Charles Y. Chiu, Joseph L. DeRisi, Carolyn S. Calfee, Charles Langelier - Genome Medicine 2022 cited by 116
- Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients
Authors: Charles Langelier, Matt S. Zinter, Katrina Kalantar, Gregory A. Yanik, S. Christenson, Brian D. O’Donovan, Corin V. White, Michael R. Wilson, Anil Sapru, Christopher C. Dvorak, Steve Miller, Charles Y. Chiu, Joseph L. DeRisi - American Journal of Respiratory and Critical Care Medicine 2017 cited by 244
- Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
Authors: Alexander L. Greninger, Samia N. Naccache, Scot Federman, Guixia Yu, Placide Mbala, Vanessa Brès, Doug Stryke, Jérôme Bouquet, Sneha Somasekar, Jeffrey M. Linnen, Roger Y. Dodd, Prime Mulembakani, Bradley S. Schneider, Jean‐Jacques Muyembé‐Tamfum, Susan L. Stramer, Charles Y. Chiu - Genome Medicine 2015 cited by 586
- Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance
Authors: Xianding Deng, Asmeeta Achari, Scot Federman, Guixia Yu, Sneha Somasekar, Inês Bártolo, Shigeo Yagi, Placide Mbala‐Kingebeni, Jimmy Kapetshi, Steve Ahuka‐Mundeke, Jean‐Jacques Muyembé‐Tamfum, Asim A. Ahmed, Vijay Ganesh, Manasi Tamhankar, Jean L. Patterson, Nicaise Ndembi, Dora Mbanya, Lazare Kaptué, Carole McArthur, José Esteban Muñoz‐Medina, César González-Bonilla, Susana López, Carlos F. Arias, Shaun Arevalo, Steve Miller, Mars Stone, Michael P. Busch, Kristina Hsieh, Sharon Messenger, Debra A. Wadford, Mary A. Rodgers, Gavin Cloherty, Nuno R. Faria, Julien Thézé, Oliver G. Pybus, Zoraima Neto, Joana Morais, Nuno Taveira, John R. Hackett, Charles Y. Chiu - Nature Microbiology 2020 cited by 197
- Nanopore DNA Sequencing and Genome Assembly on the International Space Station
Authors: Sarah L. Castro-Wallace, Charles Y. Chiu, Kristen K. John, Sarah E. Stahl, Kathleen Rubins, Alexa B. R. McIntyre, Jason P. Dworkin, Mark Lupisella, David J. Smith, Douglas J. Botkin, Timothy Stephenson, Sissel Juul, Daniel J. Turner, Fernando Izquierdo, Scot Federman, Doug Stryke, Sneha Somasekar, Noah Alexander, Guixia Yu, Christopher E. Mason, Aaron S. Burton - Scientific Reports 2017 cited by 358
- Adeno-associated virus type 2 in US children with acute severe hepatitis
Authors: Venice Servellita, Alicia Sotomayor-González, Daryl M. Lamson, Abiodun Foresythe, Hee Jae Huh, Adam L. Bazinet, Nicholas H. Bergman, Robert L. Bull, Karla Y. Garcia, Jennifer S. Goodrich, Sean Lovett, Kisha Parker, Diana Radune, April Hatada, Chao‐Yang Pan, Kyle Rizzo, J Bradford Bertumen, Christina Morales, Paul E. Oluniyi, Jenny Nguyen, Jessica Tan, Doug Stryke, Rayah Jaber, Matthew T. Leslie, Zin Lyons, Hayden D. Hedman, Umesh D. Parashar, Maureen Sullivan, Kelly Wroblewski, M. Steven Oberste, Jacqueline E. Tate, Julia M. Baker, David Sugerman, Caelin Cubeñas-Potts, Xiaoyan Lu, Preeti Chhabra, Pediatric Hepatitis of Unknown Etiology Working Group, Olivia Almendares, Neha Balachandran, Jordan Cates, Brandi Freeman, Anita Kambhampati, Rachel L. Marine, Everardo Vega, Mary E. Wikswo, Erin R. McKeever, David R. Kelly, Julie A. Boom, Leila C. Sahni, Janet A. Englund, Eileen J. Klein, Mary Allen Staat, Maeve Marsh, Erin P. Ricketts, Joshua L. Clayton, Natalia Cano, Miriam Oseguera, Robert Blattner, L. Amanda Ingram, Henry Shiau, William J. Britt, Luz Helena Gutierrez Sanchez, Caroline Ciric, Christina A. Rostad, Jan Vinjé, Hannah L. Kirking, Debra A. Wadford, R. Taylor Raborn, Kirsten St. George, Charles Y. Chiu - Nature 2023 cited by 120
- Seven-year performance of a clinical metagenomic next-generation sequencing test for diagnosis of central nervous system infections
Authors: Patrick Benoit, Noah Brazer, Mikaël de Lorenzi-Tognon, Emily Kelly, Venice Servellita, Miriam Oseguera, Jenny Nguyen, Jack Tang, Charles Omura, Jessica Streithorst, Melissa Hillberg, Danielle Ingebrigtsen, Kelsey C. Zorn, Michael R. Wilson, Timothy M. Blicharz, Amy P. Wong, Brian D. O’Donovan, Brad Murray, Steve Miller, Charles Y. Chiu - Nature Medicine 2024 cited by 136
- Longitudinal comparison of the developing gut virome in infants and their mothers
Authors: William A. Walters, Andrea Granados, Catherine Ley, Scot Federman, Doug Stryke, Yale Santos, Thomas D. Haggerty, Alicia Sotomayor-González, Venice Servellita, Ruth E. Ley, Julie Parsonnet, Charles Y. Chiu - Cell Host & Microbe 2023 cited by 53
- A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples
Authors: Samia N. Naccache, Scot Federman, Narayanan Veeraraghavan, Matei Zaharia, Deanna Lee, Erik Samayoa, Jérôme Bouquet, Alexander L. Greninger, Ka-Cheung Luk, Barryett Enge, Debra A. Wadford, Sharon Messenger, Gillian L. Genrich, Kristen Pellegrino, Gilda Grard, Eric M. Leroy, Bradley S. Schneider, Joseph N. Fair, Miguel Ángel Martínez, Pavel Iša, John A. Crump, Joseph L. DeRisi, Taylor Sittler, John Hackett, Steve Miller, Charles Y. Chiu - Genome Research 2014 cited by 490
- In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains
Authors: Rita E. Chen, Emma S. Winkler, James Brett Case, Ishmael D. Aziati, Traci L. Bricker, Astha Joshi, Tamarand L. Darling, Baoling Ying, John M. Errico, Swathi Shrihari, Laura A. VanBlargan, Xuping Xie, Pavlo Gilchuk, Seth J. Zost, Lindsay Droit, Zhuoming Liu, Spencer Stumpf, David Wang, Scott A. Handley, W. Blaine Stine, Pei‐Yong Shi, Meredith E. Davis-Gardner, Mehul S. Suthar, Miguel Garcia-Knight, Raul Andino, Charles Y. Chiu, Ali H. Ellebedy, Daved H. Fremont, Sean P. J. Whelan, James E. Crowe, Lisa A. Purcell, Davide Corti, Adrianus C. M. Boon, Michael Diamond - Nature 2021 cited by 261
- Limited cross-variant immunity from SARS-CoV-2 Omicron without vaccination
Authors: Rahul K. Suryawanshi, Irene P. Chen, Tongcui Ma, Abdullah M. Syed, Noah Brazer, Prachi Saldhi, Camille R. Simoneau, Alison Ciling, Mir M. Khalid, Bharath Sreekumar, Peiyi Chen, G. Renuka Kumar, Mauricio Montaño, Ronne Gascon, Chia-Lin Tsou, Miguel Garcia-Knight, Alicia Sotomayor-González, Venice Servellita, Amelia S. Gliwa, Jenny Nguyen, Inês Silva, Bilal Milbes, Noah Kojima, Victoria Hess, Maria Shacreaw, Lauren Lopez, Matthew Brobeck, Fred Turner, Frank Soveg, Ashley F. George, Xiaohui Fang, Mazharul Maishan, Michael A. Matthay, Mary Kate Morris, Debra A. Wadford, Carl V. Hanson, Warner C. Greene, Raul Andino, Lee Spraggon, Nadia R. Roan, Charles Y. Chiu, Jennifer A. Doudna, Mélanie Ott - Nature 2022 cited by 213
- Single-molecule sequencing detection of N6-methyladenine in microbial reference materials
Authors: Alexa B. R. McIntyre, Noah Alexander, Kirill Grigorev, Daniela Bezdan, Heike Sichtig, Charles Y. Chiu, Christopher E. Mason - Nature Communications 2019 cited by 191
