Dirk Schübeler
Active 1996–2025
- 98
- Papers
- 28,689
- Citations
- 83
- h-index
- 96
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology79.3%
- Medicine12%
- Agricultural and Biological Sciences3.2%
- Immunology and Microbiology2%
- Neuroscience1.7%
- Environmental Science0.6%
- Other1.2%
Topics
- Epigenetics and DNA Methylation17.5%
- Genomics and Chromatin Dynamics9.9%
- RNA modifications and cancer5.9%
- Cancer-related gene regulation4.7%
- RNA Research and Splicing3%
- CRISPR and Genetic Engineering2.3%
- Other56.7%
Coauthors
- Lukas Burger27
- Michael Stadler18
- Mark Groudine14
- C Wirbelauer13
- Arnaud Krebs9
- Edward J. Oakeley9
- Luke Isbel9
- Ralph S. Grand9
- Dimos Gaidatzis8
- Fabio Mohn8
- Vijay Tiwari8
- Florian Lienert7
- Leslie Hoerner7
- Michaël Weber7
- Nicolas H. Thomä7
- Oliver Bell7
- Rabih Murr7
- Antoine H.F.M. Peters6
- Tuncay Baubec6
- Alicia K. Michael5
- Matthew C. Lorincz5
- Michaela Schwaiger5
- Anne Schöler4
- Erik van Nimwegen4
All papers
- Function and information content of DNA methylation
Authors: Dirk Schübeler - Nature 2015 cited by 2,157
- Impact of cytosine methylation on DNA binding specificities of human transcription factors
Authors: Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush Kumar Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, А. Н. Попов, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale - Science 2017 cited by 1,356
- Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation
Authors: Sebastian Kaluscha, Silvia Domcke, C Wirbelauer, Michael Stadler, Sevi Durdu, Lukas Burger, Dirk Schübeler - Nature Genetics 2022 cited by 202
- Mammalian ISWI and SWI/SNF selectively mediate binding of distinct transcription factors
Authors: Darko Barišić, Michael Stadler, Mario Iurlaro, Dirk Schübeler - Nature 2019 cited by 278
- Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
Authors: Michaël Weber, Ines Hellmann, Michael Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler - Nature Genetics 2007 cited by 2,255
- DNA-binding factors shape the mouse methylome at distal regulatory regions
Authors: Michael Stadler, Rabih Murr, Lukas Burger, Robert Ivánek, Florian Lienert, Anne Schöler, Erik van Nimwegen, C Wirbelauer, Edward J. Oakeley, Dimos Gaidatzis, Vijay Tiwari, Dirk Schübeler - Nature, Nat. 2011 cited by 1,481
- Mechanisms of OCT4-SOX2 motif readout on nucleosomes
Authors: Alicia K. Michael, Ralph S. Grand, Luke Isbel, Simone Cavadini, Zuzanna Kozicka, Georg Kempf, R.D. Bunker, Andreas D. Schenk, Alexandra Graff-Meyer, G.R. Pathare, Joscha Weiss, S. Matsumoto, Lukas Burger, Dirk Schübeler, Nicolas H. Thomä - Science 2020 cited by 260
- Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
Authors: Tuncay Baubec, Daniele Colombo, C Wirbelauer, Juliane Schmidt, Lukas Burger, Arnaud Krebs, Altuna Akalin, Dirk Schübeler - Nature 2015 cited by 723
- YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers
Authors: Claudia Stein, Anaïs F. Bardet, Guglielmo Roma, Sebastian Bergling, Ieuan Clay, Alexandra Ruchti, Claudia Agarinis, Tobias Schmelzle, Tewis Bouwmeester, Dirk Schübeler, Andreas Bauer - PLoS Genetics 2015 cited by 428
- Generating specificity in genome regulation through transcription factor sensitivity to chromatin
Authors: Luke Isbel, Ralph S. Grand, Dirk Schübeler - Nature Reviews Genetics 2022 cited by 164
- Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
Authors: Michaël Weber, Jonathan Davies, David Wittig, Edward J. Oakeley, Michael Haase, Wan L. Lam, Dirk Schübeler - Nature Genetics 2005 cited by 1,754
- genomation: a toolkit to summarize, annotate and visualize genomic intervals
Authors: Altuna Akalin, Vedran Franke, Kristian Vlahovicek, Christopher E. Mason, Dirk Schübeler - Bioinformatics, Bioinform. 2014 cited by 423
- Competition between DNA methylation and transcription factors determines binding of NRF1
Authors: Silvia Domcke, Anaïs F. Bardet, Paul Adrian Ginno, Dominik Hartl, Lukas Burger, Dirk Schübeler - Nature, Nat. 2015 cited by 535
- Mammalian SWI/SNF continuously restores local accessibility to chromatin
Authors: Mario Iurlaro, Michael Stadler, Francesca Masoni, Zainab Jagani, Giorgio Giacomo Galli, Dirk Schübeler - Nature Genetics 2021 cited by 203
- Molecular Co-occupancy Identifies Transcription Factor Binding Cooperativity In Vivo
Authors: Can Sönmezer, Rozemarijn Kleinendorst, Dilek Imanci, Guido Barzaghi, Laura Villacorta, Dirk Schübeler, Vladimı́r Beneš, Nacho Molina, Arnaud Krebs - Molecular Cell 2020 cited by 176
- Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming
Authors: Neha Tiwari, Vijay Tiwari, Lorenz Waldmeier, Piotr J. Balwierz, Phil Arnold, Mikhail Pachkov, Nathalie Meyer‐Schaller, Dirk Schübeler, Erik van Nimwegen, Gerhard Christofori - Cancer Cell 2013 cited by 501
- Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates and humans
Authors: Josephine Jüttner, Arnold Szabó, Brigitte Gross-Scherf, Rei Morikawa, Santiago B. Rompani, Péter Hantz, Tamás Szikra, Federico Esposti, Cameron S. Cowan, Arjun Bharioke, Claudia P. Patino-Alvarez, Özkan Keles, Ákos Kusnyerik, Thierry Azoulay, Dominik Hartl, Arnaud Krebs, Dirk Schübeler, Rozina Ida Hajdú, Ákos Lukáts, János Németh, Zoltán Zsolt Nagy, Kun‐Chao Wu, Ronghan Wu, Lue Xiang, Xiaolong Fang, Zi‐Bing Jin, David Goldblum, Pascal W. Hasler, Hendrik P. N. Scholl, Jacek Król, Botond Roska - Nature Neuroscience 2019 cited by 217
- Genome-wide Single-Molecule Footprinting Reveals High RNA Polymerase II Turnover at Paused Promoters
Authors: Arnaud Krebs, Dilek Imanci, Leslie Hoerner, Dimos Gaidatzis, Lukas Burger, Dirk Schübeler - Molecular Cell 2017 cited by 261
- A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity
Authors: Paul A. Ginno, Dimos Gaidatzis, Angelika Feldmann, Leslie Hoerner, Dilek Imanci, Lukas Burger, Frédéric Zilbermann, Antoine H.F.M. Peters, Frank Edenhofer, Sébastien A. Smallwood, Arnaud Krebs, Dirk Schübeler - Nature Communications 2020 cited by 203
- Cooperation between bHLH transcription factors and histones for DNA access
Authors: Alicia K. Michael, Lisa Stoos, Priya Crosby, Nikolas Eggers, Xinyu Y. Nie, Kristina Makasheva, Martina Minnich, Kelly L. Healy, Joscha Weiss, Georg Kempf, Simone Cavadini, Lukas Kater, Jan Seebacher, Luca Vecchia, Deyasini Chakraborty, Luke Isbel, Ralph S. Grand, Florian Andersch, Jennifer L. Fribourgh, Dirk Schübeler, Johannes Zuber, Andrew C. Liu, Peter B. Becker, Beat Fierz, Carrie L. Partch, Jérôme S. Menet, Nicolas H. Thomä - Nature 2023 cited by 106
- Readout of histone methylation by Trim24 locally restricts chromatin opening by p53
Authors: Luke Isbel, Murat Iskar, Sevi Durdu, Joscha Weiss, Ralph S. Grand, Eric Hietter-Pfeiffer, Zuzanna Kozicka, Alicia K. Michael, Lukas Burger, Nicolas H. Thomä, Dirk Schübeler - Nature Structural & Molecular Biology 2023 cited by 43
- Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa
Authors: Urszula Brykczynska, Mizue Hisano, Serap Erkek, Liliana Ramos, Edward J. Oakeley, Tim Roloff, Christian Beisel, Dirk Schübeler, Michael Stadler, Antoine H.F.M. Peters - Nature Structural & Molecular Biology 2010 cited by 686
- BANP opens chromatin and activates CpG-island-regulated genes
Authors: Ralph S. Grand, Lukas Burger, Cathrin Gräwe, Alicia K. Michael, Luke Isbel, Daniel Heß, Leslie Hoerner, Vytautas Iešmantavičius, Sevi Durdu, Marco Pregnolato, Arnaud Krebs, Sébastien A. Smallwood, Nicolas H. Thomä, Michiel Vermeulen, Dirk Schübeler - Nature 2021 cited by 102
- Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors
Authors: Fabio Mohn, Michaël Weber, Michael Rebhan, Tim Roloff, Jens Richter, Michael Stadler, Miriam Bibel, Dirk Schübeler - Molecular Cell 2008 cited by 896
