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Dmitriy M. Chudakov

Active 2003–2025

Also published as
Dmitriy M Chudakov
98
Papers
20,120
Citations
67
h-index
92
i10-index

Citations

Citations per year for Dmitriy M. Chudakov1990: 1 citations1991: 1 citations1992: 1 citations2003: 6 citations2004: 17 citations2005: 47 citations2006: 55 citations2007: 86 citations2008: 118 citations2009: 177 citations2010: 150 citations2011: 137 citations2012: 142 citations2013: 167 citations2014: 140 citations2015: 154 citations2016: 213 citations2017: 196 citations2018: 285 citations2019: 740 citations2020: 908 citations2021: 965 citations2022: 804 citations2023: 620 citations2024: 986 citations2025: 484 citations2026: 23 citations1993–2002: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,608 citing papers, 27.9% of this breakdownChina: 970 citing papers, 10.4% of this breakdownGermany: 675 citing papers, 7.2% of this breakdownUnited Kingdom: 675 citing papers, 7.2% of this breakdownFrance: 350 citing papers, 3.8% of this breakdownJapan: 318 citing papers, 3.4% of this breakdownCanada: 312 citing papers, 3.3% of this breakdownAustralia: 290 citing papers, 3.1% of this breakdownNetherlands: 265 citing papers, 2.8% of this breakdownSwitzerland: 257 citing papers, 2.8% of this breakdownRussia: 256 citing papers, 2.7% of this breakdownItaly: 246 citing papers, 2.6% of this breakdown
0%27.9%Other 22.8%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology35.5%
  • Medicine30.8%
  • Immunology and Microbiology23.7%
  • Neuroscience2.9%
  • Engineering2%
  • Materials Science1.4%
  • Other3.7%

Topics

  • Immune Cell Function and Interaction8.6%
  • T-cell and B-cell Immunology8.2%
  • Immunotherapy and Immune Responses5.4%
  • Cancer Immunotherapy and Biomarkers4.6%
  • Advanced Fluorescence Microscopy Techniques3.8%
  • CAR-T cell therapy research3.7%
  • Other65.7%

Coauthors

All papers

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  1. MiXCR: software for comprehensive adaptive immunity profiling

    Authors: Dmitriy A. Bolotin, S. Poslavskii, Igor Mitrophanov, Mikhail Shugay, Ilgar Z. Mamedov, Ekaterina V. Putintseva, Dmitriy M. Chudakov - Nature Methods 2015 cited by 1,853

  2. B cells, plasma cells and antibody repertoires in the tumour microenvironment

    Authors: Г. В. Шаронов, Ekaterina O. Serebrovskaya, Diana V. Yuzhakova, Olga V. Britanova, Dmitriy M. Chudakov - Nature reviews. Immunology 2020 cited by 648

  3. VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

    Authors: Mikhail Shugay, Dmitriy V. Bagaev, Ivan V. Zvyagin, Renske M. A. Vroomans, Jeremy Chase Crawford, Garry Dolton, Ekaterina A. Komech, Anastasiya L Sycheva, Anna E. Koneva, Evgeniy S. Egorov, А. В. Елисеев, Ewald van Dyk, Pradyot Dash, Meriem Attaf, Cristina Rius, Kristin Ladell, James E. McLaren, Katherine Matthews, E. Bridie Clemens, Daniel C. Douek, Fabio Luciani, Debbie van Baarle, Katherine Kedzierska, Can Keşmir, Paul G. Thomas, David A. Price, Andrew K. Sewell, Dmitriy M. Chudakov - Nucleic Acids Research, Nucleic Acids Res. 2017 cited by 645

  4. Regulatory T Cells Exhibit Distinct Features in Human Breast Cancer

    Authors: George Plitas, Catherine Konopacki, Kenmin Wu, Paula D. Bos, Monica Morrow, Ekaterina V. Putintseva, Dmitriy M. Chudakov, Alexander Y. Rudensky - Immunity 2016 cited by 704

  5. Local fitness landscape of the green fluorescent protein

    Authors: Karen S. Sarkisyan, Dmitriy A. Bolotin, Margarita Meer, Dinara R. Usmanova, Alexander S. Mishin, Г. В. Шаронов, Dmitry N. Ivankov, Nina G. Bozhanova, Михаил С. Баранов, Onuralp Söylemez, Natalya S. Bogatyreva, Peter K. Vlasov, Evgeny S. Egorov, Maria D. Logacheva, Alexey S. Kondrashov, Dmitriy M. Chudakov, Ekaterina V. Putintseva, Ilgar Z. Mamedov, Dan S. Tawfik, Konstantin A. Lukyanov, Fyodor A. Kondrashov - Nature, Nat. 2016 cited by 701

  6. VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2

    Authors: Mikhail Goncharov, Dmitry Bagaev, D. P. Shcherbinin, Ivan V. Zvyagin, Dmitriy A. Bolotin, Paul G. Thomas, Anastasia A. Minervina, Mikhail V. Pogorelyy, Kristin Ladell, James E. McLaren, David A. Price, Thi H. O. Nguyen, Louise C. Rowntree, E. Bridie Clemens, Katherine Kedzierska, Garry Dolton, Cristina Rius, Andrew K. Sewell, Jerome Samir, Fabio Luciani, Ksenia V. Zornikova, Alexandra Khmelevskaya, Saveliy A. Sheetikov, Grigory A. Efimov, Dmitriy M. Chudakov, Mikhail Shugay - Nature Methods 2022 cited by 230

  7. Two subsets of stem-like CD8+ memory T cell progenitors with distinct fate commitments in humans

    Authors: Giovanni Galletti, Gabriele De Simone, Emilia Maria Cristina Mazza, Simone Puccio, Claudia Mezzanotte, Timothy Bi, Alexey N. Davydov, Maria Metsger, Eloise Scamardella, Giorgia Alvisi, Fédérica De Paoli, Veronica Zanon, Alice Scarpa, Barbara Camisa, Federico Colombo, Achille Anselmo, Clelia Peano, Sara Polletti, Domenico Mavilio, Luca Gattinoni, Shannon K. Boi, Ben Youngblood, Rhiannon E. Jones, Duncan M. Baird, Emma Gostick, Sian Llewellyn‐Lacey, Kristin Ladell, David A. Price, Dmitriy M. Chudakov, Evan W. Newell, Monica Casucci, Enrico Lugli - Nature Immunology 2020 cited by 321

  8. Stability and function of regulatory T cells expressing the transcription factor T-bet

    Authors: Andrew G. Levine, Alejandra Mendoza, Saskia Hemmers, Bruno Moltedo, Rachel Niec, Michail Schizas, Beatrice Hoyos, Ekaterina V. Putintseva, Ashutosh Chaudhry, Stanislav Dikiy, Sho Fujisawa, Dmitriy M. Chudakov, Piper M. Treuting, Alexander Y. Rudensky - Nature 2017 cited by 385

  9. Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides

    Authors: Xinbo Yang, Lee Garner, Ivan V. Zvyagin, Michael Paley, Ekaterina A. Komech, Kevin M. Jude, Xiang Zhao, Ricardo A. Fernandes, Lynn M. Hassman, Grace Paley, Christina S. Savvides, Simon Brackenridge, Max Quastel, Dmitriy M. Chudakov, Paul Bowness, Wayne M. Yokoyama, Andrew J. McMichael, Geraldine M. Gillespie, K. Christopher García - Nature 2022 cited by 175

  10. Clonal selection in the human Vδ1 T cell repertoire indicates γδ TCR-dependent adaptive immune surveillance

    Authors: Martin S. Davey, Carrie R. Willcox, Stephen Paul Joyce, Kristin Ladell, Sofya A. Kasatskaya, James E. McLaren, Stuart Hunter, Mahboob Salim, Fiyaz Mohammed, David A. Price, Dmitriy M. Chudakov, Benjamin E. Willcox - Nature Communications 2017 cited by 284

  11. Age-Related Decrease in TCR Repertoire Diversity Measured with Deep and Normalized Sequence Profiling

    Authors: Olga V. Britanova, Ekaterina V. Putintseva, Mikhail Shugay, Ekaterina M. Merzlyak, Maria A. Turchaninova, Dmitriy B. Staroverov, Dmitriy A. Bolotin, Sergey Lukyanov, Е. А. Богданова, Ilgar Z. Mamedov, Yuri B. Lebedev, Dmitriy M. Chudakov - The Journal of Immunology 2014 cited by 478

  12. Fluorescent Proteins and Their Applications in Imaging Living Cells and Tissues

    Authors: Dmitriy M. Chudakov, Mikhail V. Matz, Sergey Lukyanov, Konstantin A. Lukyanov - Physiological Reviews 2010 cited by 1,368

  13. Targeted depletion of TRBV9+ T cells as immunotherapy in a patient with ankylosing spondylitis

    Authors: Olga V. Britanova, Ksenia R. Lupyr, Dmitriy B. Staroverov, Irina A. Shagina, А. А. Александров, Yakov Yu Ustyugov, Dmitry V. Somov, А. А. Клименко, Nadejda A. Shostak, Ivan V. Zvyagin, А. В. Степанов, Ekaterina M. Merzlyak, Alexey N. Davydov, Mark Izraelson, Evgeniy S. Egorov, Е. А. Богданова, Anna Vladimirova, Pavel A. Iakovlev, Denis A. Fedorenko, Roman Ivanov, Veronika Skvortsova, S. А. Lukyanov, Dmitriy M. Chudakov - Nature Medicine 2023 cited by 107

  14. Antigen receptor repertoire profiling from RNA-seq data

    Authors: Dmitriy A. Bolotin, Stanislav Poslavsky, Alexey N. Davydov, Felix Frenkel, Lorenzo F. Fanchi, Olga Zolotareva, Saskia Hemmers, Ekaterina V. Putintseva, Anna Obraztsova, Mikhail Shugay, Ravshan Ataullakhanov, Alexander Y. Rudensky, Ton N. Schumacher, Dmitriy M. Chudakov - Nature Biotechnology 2017 cited by 354

  15. HRES-1/Rab4-mediated depletion of Drp1 impairs mitochondrial homeostasis and represents a target for treatment in SLE

    Authors: Tiffany Caza, David Fernández, Gergely Talabér, Zachary Oaks, Mark Haas, Michael P. Madaio, Zhi‐Wei Lai, Gabriella Miklóssy, Ram Raj Singh, Dmitriy M. Chudakov, Walter Malorni, Frank A. Middleton, Katalin Bánki, András Perl - Annals of the Rheumatic Diseases 2013 cited by 187

  16. The human Vδ2+ T-cell compartment comprises distinct innate-like Vγ9+ and adaptive Vγ9- subsets

    Authors: Martin S. Davey, Carrie R. Willcox, Stuart Hunter, Sofya A. Kasatskaya, Ester B. M. Remmerswaal, Mahboob Salim, Fiyaz Mohammed, Fréderike J. Bemelman, Dmitriy M. Chudakov, Ye Htun Oo, Benjamin E. Willcox - Nature Communications 2018 cited by 225

  17. Towards error-free profiling of immune repertoires

    Authors: Mikhail Shugay, Olga V. Britanova, Ekaterina M. Merzlyak, Maria A. Turchaninova, Ilgar Z. Mamedov, Timur Tuganbaev, Dmitriy A. Bolotin, Dmitriy B. Staroverov, Ekaterina V. Putintseva, Karla Plevová, Carsten Linnemann, Dmitry A. Shagin, Šárka Pospı́šilová, Sergey Lukyanov, Ton N. Schumacher, Dmitriy M. Chudakov - Nature Methods 2014 cited by 470

  18. A genetically encoded photosensitizer

    Authors: Maria E Bulina, Dmitriy M. Chudakov, Olga V. Britanova, Yurii G. Yanushevich, Dmitriy B. Staroverov, Tatyana V Chepurnykh, Ekaterina M. Merzlyak, Maria Shkrob, Sergey Lukyanov, Konstantin A. Lukyanov - Nature Biotechnology 2005 cited by 591

  19. Far-red fluorescent tags for protein imaging in living tissues

    Authors: Dmitry Shcherbo, Christopher S. Murphy, Galina V. Ermakova, Elena A. Solovieva, T. V. Chepurnykh, A.S. Shcheglov, Vladislav V. Verkhusha, В. З. Плетнев, Kristin L. Hazelwood, Patrick M. Roche, Sergey Lukyanov, Andrey G. Zaraisky, Michael Davidson, Dmitriy M. Chudakov - Biochemical Journal 2009 cited by 590

  20. Human liver infiltrating γδ T cells are composed of clonally expanded circulating and tissue-resident populations

    Authors: Stuart Hunter, Carrie R. Willcox, Martin S. Davey, Sofya A. Kasatskaya, Hannah C. Jeffery, Dmitriy M. Chudakov, Ye Htun Oo, Benjamin E. Willcox - Journal of Hepatology 2018 cited by 157

  21. Bright monomeric red fluorescent protein with an extended fluorescence lifetime

    Authors: Ekaterina M. Merzlyak, Joachim Goedhart, Dmitry Shcherbo, Mariya E Bulina, A.S. Shcheglov, Arkady F. Fradkov, Anna Gaintzeva, Konstantin A. Lukyanov, Sergey Lukyanov, Theodorus W. J. Gadella, Dmitriy M. Chudakov - Nature Methods 2007 cited by 646

  22. Detecting T cell receptors involved in immune responses from single repertoire snapshots

    Authors: Mikhail V. Pogorelyy, Anastasia A. Minervina, Mikhail Shugay, Dmitriy M. Chudakov, Yuri B. Lebedev, Thierry Mora, Aleksandra M. Walczak - PLoS Biology 2019 cited by 149

  23. Memory CD4+ T cells are generated in the human fetal intestine

    Authors: Na Li, Vincent van Unen, Tamim Abdelaal, Nannan Guo, Sofya A. Kasatskaya, Kristin Ladell, James E. McLaren, Evgeny S. Egorov, Mark Izraelson, Susana M. Chuva de Sousa Lopes, Thomas Höllt, Olga V. Britanova, Jeroen Eggermont, Noel F.C.C. de Miranda, Dmitriy M. Chudakov, David A. Price, Boudewijn P. F. Lelieveldt, Frits Koning - Nature Immunology 2019 cited by 200

  24. Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases

    Authors: Pierre Barennes, Valentin Quiniou, Mikhail Shugay, Evgeniy S. Egorov, Alexey N. Davydov, Dmitriy M. Chudakov, Imran Uddin, Mazlina Ismail, Theres Oakes, Benny Chain, Anne Eugster, Karl Kashofer, Peter P. Rainer, Samuel Darko, Amy Ransier, Daniel C. Douek, David Klatzmann, Encarnita Mariotti‐Ferrandiz - Nature Biotechnology 2020 cited by 131