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James J. Collins

Active 1983–2025

Also published as
James J Collins
322
Papers
119,318
Citations
169
h-index
314
i10-index

Citations

Citations per year for James J. Collins1954: 1 citations1970: 2 citations1972: 3 citations1985: 2 citations1987: 6 citations1988: 2 citations1989: 9 citations1990: 4 citations1991: 6 citations1992: 3 citations1993: 18 citations1994: 16 citations1995: 41 citations1996: 60 citations1997: 115 citations1998: 142 citations1999: 162 citations2000: 211 citations2001: 230 citations2002: 310 citations2003: 369 citations2004: 456 citations2005: 508 citations2006: 644 citations2007: 741 citations2008: 694 citations2009: 913 citations2010: 929 citations2011: 1,088 citations2012: 1,141 citations2013: 1,401 citations2014: 1,382 citations2015: 1,382 citations2016: 1,469 citations2017: 1,529 citations2018: 1,691 citations2019: 3,809 citations2020: 4,424 citations2021: 4,678 citations2022: 4,319 citations2023: 3,507 citations2024: 5,400 citations2025: 3,010 citations2026: 176 citations2027: 1 citations1955–1969: no citations, so these years are not shown1971: no citations, so this year is not shown1973–1984: no citations, so these years are not shown1986: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 12,595 citing papers, 26.8% of this breakdownChina: 7,217 citing papers, 15.3% of this breakdownUnited Kingdom: 2,959 citing papers, 6.3% of this breakdownGermany: 2,324 citing papers, 4.9% of this breakdownCanada: 1,452 citing papers, 3.1% of this breakdownFrance: 1,431 citing papers, 3% of this breakdownIndia: 1,291 citing papers, 2.8% of this breakdownItaly: 1,243 citing papers, 2.6% of this breakdownJapan: 1,223 citing papers, 2.6% of this breakdownAustralia: 1,089 citing papers, 2.3% of this breakdownSpain: 1,069 citing papers, 2.3% of this breakdownSwitzerland: 981 citing papers, 2.1% of this breakdown
0%26.8%Other 25.9%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology50.8%
  • Medicine13%
  • Computer Science6.4%
  • Engineering6.2%
  • Immunology and Microbiology4%
  • Environmental Science3.7%
  • Other15.9%

Topics

  • CRISPR and Genetic Engineering5.3%
  • Gene Regulatory Network Analysis4.9%
  • Advanced biosensing and bioanalysis techniques2.7%
  • Bioinformatics and Genomic Networks2.4%
  • Bacterial Genetics and Biotechnology1.8%
  • RNA and protein synthesis mechanisms1.8%
  • Other81.1%

Coauthors

All papers

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  1. Nucleic acid detection with CRISPR-Cas13a/C2c2

    Authors: Jonathan S. Gootenberg, Omar O. Abudayyeh, Jeong Wook Lee, Patrick Essletzbichler, Aaron J. Dy, Julia Joung, Vanessa K. Verdine, Nina M. Donghia, Nichole M. Daringer, Catherine A. Freije, Cameron Myhrvold, Roby P. Bhattacharyya, Jonathan Livny, Aviv Regev, Eugene V. Koonin, Deborah T. Hung, Pardis C. Sabeti, James J. Collins, Feng Zhang - Science 2017 cited by 3,942

  2. A Deep Learning Approach to Antibiotic Discovery

    Authors: Jonathan Stokes, Kevin Yang, Kyle L. Swanson, Wengong Jin, Andrés Cubillos-Ruiz, Nina M. Donghia, Craig R. MacNair, Shawn French, Lindsey A. Carfrae, Zohar Bloom‐Ackermann, Victoria M. Tran, Anush Chiappino-Pepe, Ahmed H. Badran, Ian W. Andrews, Emma J. Chory, George M. Church, Eric D. Brown, Tommi Jaakkola, Regina Barzilay, James J. Collins - Cell 2020 cited by 2,341

  3. Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6

    Authors: Jonathan S. Gootenberg, Omar O. Abudayyeh, Max J. Kellner, Julia Joung, James J. Collins, Feng Zhang - Science 2018 cited by 2,704

  4. CRISPR-based diagnostics

    Authors: Michael M. Kaminski, Omar O. Abudayyeh, Jonathan S. Gootenberg, Feng Zhang, James J. Collins - Nature Biomedical Engineering 2021 cited by 1,212

  5. End-to-end design of wearable sensors

    Authors: H. Ceren Ates, Peter Q. Nguyen, Laura Gonzalez‐Macia, Eden Morales‐Narváez, Firat Güder, James J. Collins, Can Dincer - Nature Reviews Materials 2022 cited by 1,156

  6. Discovery of a structural class of antibiotics with explainable deep learning

    Authors: Felix Wong, Erica J. Zheng, Jacqueline A. Valeri, Nina M. Donghia, Melis N. Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L. Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K. Fiejtek, Florence F. Wagner, Holly H. Soutter, Ashlee M. Earl, Jonathan M. Stokes, Lars D. Renner, James J. Collins - Nature, Nat. 2023 cited by 420

  7. Definitions and guidelines for research on antibiotic persistence

    Authors: Nathalie Q. Balaban, Sophie Hélaine, Kim Lewis, Martin Ackermann, Bree B. Aldridge, Dan I. Andersson, Mark P. Brynildsen, Dirk Bumann, Andrew Camilli, James J. Collins, Christoph Dehio, Sarah M. Fortune, Jean‐Marc Ghigo, Wolf‐Dietrich Hardt, Alexander Harms, Matthias Heinemann, Deborah T. Hung, Urs Jenal, Bruce R. Levin, Jan Michiels, Gisela Storz, Man-Wah Tan, Tanel Tenson, Laurence Van Melderen, Annelies S. Zinkernagel - Nature Reviews Microbiology 2019 cited by 1,260

  8. The Immunological Genome Project: networks of gene expression in immune cells

    Authors: Tracy Heng, Michio W. Painter, Kutlu G. Elpek, Veronika Lukacs‐Kornek, Nora Mauermann, Shannon J. Turley, Daphne Koller, Francis Kim, Amy J. Wagers, Natasha Asinovski, Scott Davis, Marlys S. Fassett, Markus Feuerer, Daniel H.D. Gray, Sokol Haxhinasto, Jonathan A. Hill, Gordon Hyatt, Catherine Laplace, Kristen Leatherbee, Diane Mathis, Christophe Benoıst, Radu Jianu, David H. Laidlaw, J. Adam Best, Jamie Knell, Ananda W. Goldrath, Jessica Jarjoura, Joseph C. Sun, Ya-Nan Zhu, Lewis L. Lanier, Ayla Ergün, Li Zheng, James J. Collins, Susan A. Shinton, Richard R. Hardy, Randall H. Friedline, Katelyn Sylvia, Joonsoo Kang - Nature Immunology 2008 cited by 1,935

  9. A Common Mechanism of Cellular Death Induced by Bactericidal Antibiotics

    Authors: Michael A. Kohanski, Daniel J. Dwyer, Boris Hayete, Carolyn A. Lawrence, James J. Collins - Cell 2007 cited by 3,007

  10. Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components

    Authors: Keith Pardee, Alexander A. Green, Melissa K. Takahashi, Dana Braff, Guillaume Lambert, Jeong Wook Lee, Tom Ferrante, Duo Ma, Nina M. Donghia, Melina Fan, Nichole M. Daringer, Irene Bosch, Dawn M. Dudley, David H. O’Connor, Lee Gehrke, James J. Collins - Cell 2016 cited by 1,500

  11. Highly efficient Cas9-mediated transcriptional programming

    Authors: Alejandro Chavez, Jonathan Scheiman, Suhani Vora, Benjamin W. Pruitt, Marcelle Tuttle, Eswar Prasad R. Iyer, Shuailiang Lin, Samira Kiani, Christopher D. Guzman, Daniel J. Wiegand, Dmitry Ter‐Ovanesyan, Jonathan L. Braff, Noah Davidsohn, Benjamin E. Housden, Norbert Perrimon, Ron Weiss, John Aach, James J. Collins, George M. Church - Nature Methods 2015 cited by 1,648

  12. Deep learning-guided discovery of an antibiotic targeting Acinetobacter baumannii

    Authors: Gary Liu, Denise B. Catacutan, Khushi Rathod, Kyle Swanson, Wengong Jin, Jody C. Mohammed, Anush Chiappino-Pepe, Saad A. Syed, Meghan Fragis, Kenneth Rachwalski, Jakob Magolan, Michael G. Surette, Brian K. Coombes, Tommi Jaakkola, Regina Barzilay, James J. Collins, J Stokes - Nature Chemical Biology 2023 cited by 328

  13. How antibiotics kill bacteria: from targets to networks

    Authors: Michael A. Kohanski, Daniel J. Dwyer, James J. Collins - Nature Reviews Microbiology 2010 cited by 2,223

  14. Construction of a genetic toggle switch in Escherichia coli

    Authors: Timothy S. Gardner, Charles R. Cantor, James J. Collins - Nature 2000 cited by 4,442

  15. A practical method for calculating largest Lyapunov exponents from small data sets

    Authors: Michael T. Rosenstein, James J. Collins, Carlo J. De Luca - Physica D Nonlinear Phenomena 1993 cited by 3,444

  16. Leveraging artificial intelligence in the fight against infectious diseases

    Authors: Felix Wong, César de la Fuente‐Núñez, James J. Collins - Science 2023 cited by 273

  17. Bacterial Metabolism and Antibiotic Efficacy

    Authors: Jonathan Stokes, Allison J. Lopatkin, Michael A. Lobritz, James J. Collins - Cell Metabolism 2019 cited by 616

  18. Next-Generation Machine Learning for Biological Networks

    Authors: Diogo M. Camacho, Katherine M. Collins, Rani K. Powers, James C. Costello, James J. Collins - Cell 2018 cited by 1,002

  19. Universal Chimeric Antigen Receptors for Multiplexed and Logical Control of T Cell Responses

    Authors: Jang Hwan Cho, James J. Collins, Wilson W. Wong - Cell 2018 cited by 696

  20. Wearable materials with embedded synthetic biology sensors for biomolecule detection

    Authors: Peter Q. Nguyen, Luis R. Soenksen, Nina M. Donghia, Nicolaas M. Angenent-Mari, Helena de Puig, Ally Huang, Rose Lee, Shimyn Slomovic, Tommaso Galbersanini, Geoffrey Lansberry, Hani Sallum, Evan M. Zhao, James B. Niemi, James J. Collins - Nature Biotechnology 2021 cited by 544

  21. Nanozyme-catalysed CRISPR assay for preamplification-free detection of non-coding RNAs

    Authors: Marta Broto, Michael M. Kaminski, Christopher Adrianus, Nayoung Kim, Robert Greensmith, Schan Dissanayake-Perera, Alexander J. Schubert, Xiao Tan, Hyemin Kim, Anand S. Dighe, James J. Collins, Molly M. Stevens - Nature Nanotechnology 2022 cited by 243

  22. Machine learning for antimicrobial peptide identification and design

    Authors: Fang Wan, Felix Wong, James J. Collins, César de la Fuente‐Núñez - Nature Reviews Bioengineering 2024 cited by 219

  23. Wisdom of crowds for robust gene network inference

    Authors: Daniel Marbach, James C. Costello, Robert Küffner, Nic M. Vega, Robert J. Prill, Diogo M. Camacho, Kyle R. Allison, Manolis Kellis, James J. Collins, Gustavo Stolovitzky - Nature Methods 2012 cited by 1,780

  24. A lab-on-a-chip for the concurrent electrochemical detection of SARS-CoV-2 RNA and anti-SARS-CoV-2 antibodies in saliva and plasma

    Authors: Devora Najjar, Joshua Rainbow, Sharma T. Sanjay, Pawan Jolly, Helena de Puig, Mohamed Yafia, Nolan Durr, Hani Sallum, Galit Alter, Jonathan Z. Li, Xu G. Yu, David R. Walt, Joseph A. Paradiso, Pedro Estrela, James J. Collins, Donald E. Ingber - Nature Biomedical Engineering 2022 cited by 276