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Karen Eilbeck

Active 1999–2025

61
Papers
20,287
Citations
27
h-index
37
i10-index

Citations

Citations per year for Karen Eilbeck1877: 1 citations1900: 1 citations1930: 1 citations1966: 1 citations1973: 1 citations1979: 1 citations1981: 2 citations1983: 2 citations1993: 1 citations1994: 1 citations1995: 1 citations1997: 2 citations1998: 1 citations1999: 2 citations2000: 11 citations2001: 282 citations2002: 394 citations2003: 348 citations2004: 316 citations2005: 237 citations2006: 212 citations2007: 202 citations2008: 264 citations2009: 282 citations2010: 320 citations2011: 326 citations2012: 268 citations2013: 254 citations2014: 244 citations2015: 230 citations2016: 257 citations2017: 252 citations2018: 257 citations2019: 416 citations2020: 397 citations2021: 423 citations2022: 295 citations2023: 260 citations2024: 305 citations2025: 174 citations2026: 26 citations1878–1899: no citations, so these years are not shown1901–1929: no citations, so these years are not shown1931–1965: no citations, so these years are not shown1967–1972: no citations, so these years are not shown1974–1978: no citations, so these years are not shown1980: no citations, so this year is not shown1982: no citations, so this year is not shown1984–1992: no citations, so these years are not shown1996: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,426 citing papers, 30.9% of this breakdownUnited Kingdom: 1,071 citing papers, 9.7% of this breakdownGermany: 742 citing papers, 6.7% of this breakdownChina: 496 citing papers, 4.5% of this breakdownCanada: 481 citing papers, 4.3% of this breakdownFrance: 433 citing papers, 3.9% of this breakdownSpain: 378 citing papers, 3.4% of this breakdownItaly: 360 citing papers, 3.3% of this breakdownAustralia: 313 citing papers, 2.8% of this breakdownJapan: 289 citing papers, 2.6% of this breakdownSwitzerland: 276 citing papers, 2.5% of this breakdownNetherlands: 258 citing papers, 2.3% of this breakdown
0%30.9%Other 23.1%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology67.9%
  • Computer Science8.6%
  • Medicine8.4%
  • Agricultural and Biological Sciences3.7%
  • Neuroscience1.6%
  • Chemistry1.6%
  • Other8.2%

Topics

  • Biomedical Text Mining and Ontologies8%
  • Genomics and Phylogenetic Studies6.2%
  • Bioinformatics and Genomic Networks4.9%
  • Semantic Web and Ontologies4.9%
  • RNA and protein synthesis mechanisms3.9%
  • Genomics and Rare Diseases3.1%
  • Other69%

Coauthors

All papers

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  1. The Sequence of the Human Genome

    Authors: J. Craig Venter, Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard Mural, Granger G. Sutton, Hamilton O. Smith, Mark Yandell, Cheryl Evans, Robert A. Holt, Jeannine D. Gocayne, Peter G. Amanatides, Richard M. Ballew, Daniel H. Huson, Jennifer R. Wortman, Qing Zhang, Chinnappa D. Kodira, Xiangqun Zheng-Bradley, Lin Chen, Marian Skupski, G. Subramanian, Paul D. Thomas, Jinghui Zhang, George L. Gabor Miklos, Catherine R. Nelson, Samuel Broder, Andrew G. Clark, Joe Nadeau, Victor A. McKusick, Norton D. Zinder, Arnold J. Levine, Richard J. Roberts, Mel I. Simon, Carolyn W. Slayman, Michael W. Hunkapiller, Randall Bolanos, Arthur L. Delcher, Ian Dew, Daniel Fasulo, Michael J. Flanigan, Liliana Florea, Aaron L. Halpern, Sridhar Hannenhalli, Saul Kravitz, Samuel Lévy, Clark Mobarry, Knut Reinert, Karin Remington, Jane Abu-Threideh, Ellen M. Beasley, Kendra Biddick, Vivien Bonazzi, Rhonda Brandon, Michele Cargill, Ishwar Chandramouliswaran, Rosane Charlab, Kabir Chaturvedi, Zuoming Deng, Valentina Di Francesco, Patrick Dunn, Karen Eilbeck, Carlos Evangelista, Andrei Gabrielian, Weiniu Gan, Wangmao Ge, Fangcheng Gong, Zhiping Gu, Ping Guan, Thomas J. Heiman, Maureen E. Higgins, Rui‐Ru Ji, Zhaoxi Ke, Karen A. Ketchum, Zhongwu Lai, Yiding Lei, Zhenya Li, Jiayin Li, Yong Liang, Xiaoying Lin, Fu Lu, Gennady V. Merkulov, Natalia V. Milshina, Helen M. Moore, Ashwinikumar K. Naik, Vaibhav A. Narayan, Beena Neelam, Deborah Nusskern, Douglas B. Rusch, Steven L. Salzberg, Wei Shao, Bixiong Chris Shue, Jing‐Tao Sun, Zhen Yuan Wang, Aihui Wang, Xin Wang, Jian Wang, Ming-Hui Wei, Ron Wides, Chunlin Xiao, Chunhua Yan and 173 more - Science 2001 cited by 13,699

  2. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

    Authors: Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Chris Mungall, Neocles B. Leontis, Philippe Rocca‐Serra, Alan Ruttenberg, Susanna‐Assunta Sansone, Richard H. Scheuermann, Nigam H. Shah, Patricia L. Whetzel, Suzanna Lewis - Nature Biotechnology 2007 cited by 2,620

  3. GA4GH: International policies and standards for data sharing across genomic research and healthcare

    Authors: Heidi L. Rehm, Angela Page, Lindsay Smith, Jeremy Adams, Gil Alterovitz, Lawrence Babb, Maxmillian P. Barkley, Michael Baudis, Michael J. S. Beauvais, Tim Beck, J. Beckmann, Sergi Beltrán, David L. Bernick, Alexander Bernier, James Bonfield, Tiffany Boughtwood, Guillaume Bourque, Sarion R. Bowers, Anthony J. Brookes, Michael Brudno, Matthew Brush, David Bujold, Tony Burdett, Orion J. Buske, Moran N. Cabili, Daniel Cameron, Robert J. Carroll, Esmeralda Casas-Silva, Debyani Chakravarty, Bimal P. Chaudhari, Shu Hui Chen, J. Michael Cherry, Justina Chung, Melissa Cline, Hayley Clissold, Robert Cook‐Deegan, Mélanie Courtot, Fiona Cunningham, Miro Cupak, Robert M. Davies, Danielle Denisko, Megan Doerr, Lena Dolman, Edward S. Dove, Lewis Jonathan Dursi, Stephanie O. M. Dyke, James A. Eddy, Karen Eilbeck, Kyle Ellrott, Susan Fairley, Khalid A. Fakhro, Helen V. Firth, Michael Fitzsimons, Marc Fiume, Paul Flicek, Ian Fore, Mallory Freeberg, Robert R. Freimuth, Lauren A. Fromont, Jonathan Fuerth, Clara Gaff, Weiniu Gan, Elena M. Ghanaim, David Glazer, Robert C. Green, Malachi Griffith, Obi L. Griffith, Robert L. Grossman, Tudor Groza, Jaime M. Guidry Auvil, Roderic Guigó, Dipayan Gupta, Melissa Haendel, Ada Hamosh, David Hansen, Reece K. Hart, Dean M. Hartley, David Haussler, Rachele Hendricks‐Sturrup, Calvin Wai-Loon Ho, Ashley E. Hobb, Michael M. Hoffman, Oliver Hofmann, Petr Holub, Jacob Shujui Hsu, Jean‐Pierre Hubaux, Sarah Hunt, Ammar Husami, Julius O.B. Jacobsen, Saumya S. Jamuar, Elizabeth Janes, Francis Jeanson, Aina Jené, Amber L. Johns, Yann Joly, Steven J.M. Jones, Alexander Kanitz, Yoshihiro Kato, Thomas Keane, Kristina Kekesi-Lafrance and 102 more - Cell Genomics 2021 cited by 294

  4. The Sequence Ontology: a tool for the unification of genome annotations

    Authors: Karen Eilbeck, Suzanna Lewis, Chris Mungall, Mark Yandell, Lincoln Stein, Richard Durbin, Michael Ashburner - Genome biology 2005 cited by 840

  5. Redefining fundamental concepts of transcription initiation in bacteria

    Authors: Citlalli Mejía-Almonte, Stephen Busby, Joseph T. Wade, Jacques van Helden, Adam P. Arkin, Gary D. Stormo, Karen Eilbeck, Bernhard Ø. Palsson, James E. Galagan, Julio Collado‐Vides - Nature Reviews Genetics 2020 cited by 155

  6. ClinVar Miner: Demonstrating utility of a Web-based tool for viewing and filtering ClinVar data

    Authors: Alex Henrie, Sarah E. Hemphill, Nicole Ruiz-Schultz, Brandon J. Cushman, Marina T. DiStefano, Danielle R. Azzariti, Steven M. Harrison, Heidi L. Rehm, Karen Eilbeck - Human Mutation 2018 cited by 155

  7. Settling the score: variant prioritization and Mendelian disease

    Authors: Karen Eilbeck, Aaron R. Quinlan, Mark Yandell - Nature Reviews Genetics 2017 cited by 257

  8. miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants

    Authors: Thomas Desvignes, Peter Batzel, Eugène Berezikov, Karen Eilbeck, Janan T. Eppig, Monica McAndrews, Amy Singer, John H. Postlethwait - Trends in Genetics 2015 cited by 196

  9. Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel

    Authors: Erin H. Graf, Keith E. Simmon, Keith D. Tardif, Weston Hymas, Steven Flygare, Karen Eilbeck, Mark Yandell, Robert Schlaberg - Journal of Clinical Microbiology 2016 cited by 214

  10. An explainable artificial intelligence approach for predicting cardiovascular outcomes using electronic health records

    Authors: Sergiusz Wesołowski, Gordon Lemmon, Edgar J. Hernández, Alex Henrie, Thomas A. Miller, Derek Weyhrauch, Michael D. Puchalski, Bruce E. Bray, Rashmee U. Shah, Vikrant Deshmukh, Rebecca K. Delaney, H. Joseph Yost, Karen Eilbeck, Martin Tristani‐Firouzi, Mark Yandell - PLOS Digital Health 2022 cited by 41

  11. Whole-genome sequencing analysis of suicide deaths integrating brain-regulatory eQTLs data to identify risk loci and genes

    Authors: Seonggyun Han, Emily DiBlasi, Eric T. Monson, Andrey A. Shabalin, Elliott Ferris, Danli Chen, Alison Fraser, Zhe Yu, Michael Staley, W. Brandon Callor, Erik D. Christensen, David K. Crockett, Qingqin S. Li, Virginia L. Willour, Amanda V. Bakian, Brooks Keeshin, Anna R. Docherty, Karen Eilbeck, Hilary Coon - Molecular Psychiatry 2023 cited by 37

  12. Viral Pathogen Detection by Metagenomics and Pan-Viral Group Polymerase Chain Reaction in Children With Pneumonia Lacking Identifiable Etiology

    Authors: Robert Schlaberg, Krista Queen, Keith E. Simmon, Keith D. Tardif, Chris Stockmann, Steven Flygare, Brett Kennedy, Karl V. Voelkerding, Anna M. Bramley, Jing Zhang, Karen Eilbeck, Mark Yandell, Seema Jain, Andrew T. Pavia, Suxiang Tong, Krow Ampofo - The Journal of Infectious Diseases 2017 cited by 108

  13. Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling

    Authors: Steven Flygare, Keith E. Simmon, Chase Miller, 義行 高橋, Brett Kennedy, Tonya Di Sera, Erin H. Graf, Keith D. Tardif, Aurélie Kapusta, Shawn Rynearson, Chris Stockmann, Krista Queen, Suxiang Tong, Karl V. Voelkerding, Anne J. Blaschke, Carrie L. Byington, Seema Jain, Andrew T. Pavia, Krow Ampofo, Karen Eilbeck, Gábor Marth, Mark Yandell, Robert Schlaberg - Genome biology 2016 cited by 173

  14. Quantitative measures for the management and comparison of annotated genomes

    Authors: Karen Eilbeck, Barry Moore, Carson Holt, Mark Yandell - BMC Bioinformatics, BMC Bioinform. 2009 cited by 168

  15. Developing an LSTM Model to Identify Surgical Site Infections using Electronic Healthcare Records.

    Authors: Amber C. Kiser, Karen Eilbeck, Brian T. Bucher - 2023 cited by 12

  16. Phevor Combines Multiple Biomedical Ontologies for Accurate Identification of Disease-Causing Alleles in Single Individuals and Small Nuclear Families

    Authors: Marc Singleton, Stephen L. Guthery, Karl V. Voelkerding, Karin Chen, Brett Kennedy, Rebecca L. Margraf, Jacob Durtschi, Karen Eilbeck, Martin G. Reese, Lynn B. Jorde, Chad D. Huff, Mark Yandell - The American Journal of Human Genetics 2014 cited by 195

  17. Evolution of the Sequence Ontology terms and relationships

    Authors: Christopher J. Mungall, Colin R. Batchelor, Karen Eilbeck - Journal of Biomedical Informatics, J. Biomed. Informatics 2010 cited by 94

  18. The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool

    Authors: Steven Flygare, Edgar Javier Hernandez, Lon Phan, Barry Moore, Man Li, Anthony P. Fejes, Hao Hu, Karen Eilbeck, Chad D. Huff, Lynn Jorde, Martin G. Reese, Mark Yandell - BMC Bioinformatics, BMC Bioinform. 2018 cited by 45

  19. Toward robust clinical genome interpretation: Developing a consistent terminology to characterize Mendelian disease-gene relationships—allelic requirement, inheritance modes, and disease mechanisms

    Authors: Angharad M. Roberts, Marina T. DiStefano, Erin Rooney Riggs, Katherine Josephs, Fowzan S. Alkuraya, Joanna Amberger, Mutaz Amin, Jonathan S. Berg, Fiona Cunningham, Karen Eilbeck, Helen V. Firth, Julia Foreman, Ada Hamosh, Eleanor Hay, S. E. A. Leigh, Christa Lese Martin, Ellen M. McDonagh, Daniel Perrett, Erin M. Ramos, Peter N. Robinson, Ana Rath, David Sant, Zornitza Stark, Nicola Whiffin, Heidi L. Rehm, James S. Ware - Genetics in Medicine 2023 cited by 17

  20. Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API

    Authors: Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano - Bioinformatics, Bioinform. 2019 cited by 58

  21. An artificial intelligence approach for investigating multifactorial pain-related features of endometriosis

    Authors: Amber C. Kiser, Karen C. Schliep, Edgar J. Hernández, C. Matthew Peterson, Mark Yandell, Karen Eilbeck - PLoS ONE 2024 cited by 11

  22. OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data

    Authors: Jingshan Huang, Fernando Gutierrez, Harrison J. Strachan, Dejing Dou, Weili Huang, Barry Smith, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Yu Lin, Bin Wu, Nisansa de Silva, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan, Alan Ruttenberg - Journal of Biomedical Semantics, J. Biomed. Semant. 2016 cited by 33

  23. GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data

    Authors: Mike Cornell, Norman W. Paton, Shengli Wu, Carole A. Goble, Crispin J. Miller, Paul Kirby, Karen Eilbeck, Andy Brass, Andrew Hayes, Stephen G. Oliver - Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001) 2001 cited by 33

  24. Pain points in parents’ interactions with newborn screening systems: a qualitative study

    Authors: Mike Conway, Truc T. Vuong, Kim Hart, Andreas Rohrwasser, Karen Eilbeck - BMC Pediatrics 2022 cited by 17