Lukas A. Mueller
Active 2000–2025
- 82
- Papers
- 19,633
- Citations
- 54
- h-index
- 75
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology59.4%
- Agricultural and Biological Sciences26.1%
- Medicine4.7%
- Computer Science2.1%
- Environmental Science1.9%
- Neuroscience1%
- Other4.8%
Topics
- Genomics and Phylogenetic Studies4.9%
- Microbial Metabolic Engineering and Bioproduction4.8%
- Plant Molecular Biology Research4.6%
- Plant Gene Expression Analysis4.5%
- Bioinformatics and Genomic Networks4.1%
- Photosynthetic Processes and Mechanisms2.7%
- Other74.4%
Coauthors
- Aureliano Bombarely13
- Susan R. Strickler13
- Naama Menda12
- Surya Saha11
- Peifen Zhang10
- James J. Giovannoni9
- Prashant S. Hosmani9
- Peter D. Karp8
- Zhangjun Fei8
- Anuradha Pujar7
- Mirella Flores-Gonzalez7
- Noé Fernández‐Pozo7
- David Lyon6
- Guillaume Bauchet6
- Hartmut Foerster6
- Isaak Y. Tecle6
- Jeremy D. Edwards6
- Steven D. Tanksley6
- Suzanne M. Paley6
- Adrian F. Powell5
- Mario Latendresse5
- Markus Krummenacker5
- Ron Caspi5
- Seung Y. Rhee5
All papers
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Authors: Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Peter D. Karp - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 3,499
- Graph pangenome captures missing heritability and empowers tomato breeding
Authors: Yao Zhou, Zhiyang Zhang, Zhigui Bao, Hongbo Li, Yaqing Lyu, Yanjun Zan, Yaoyao Wu, Lin Cheng, Yuhan Fang, Kun Wu, Jinzhe Zhang, Hongjun Lyu, Tao Lin, Qiang Gao, Surya Saha, Lukas A. Mueller, Zhangjun Fei, Thomas Städler, Shizhong Xu, Zhiwu Zhang, Doug Speed, Sanwen Huang - Nature 2022 cited by 517
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
Authors: Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, Aya Kubo, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp - Nucleic Acids Research, Nucleic Acids Res. 2013 cited by 1,210
- The Sol Genomics Network (SGN) - from genotype to phenotype to breeding
Authors: Noé Fernández-Pozo, Naama Menda, Jeremy D. Edwards, Surya Saha, Isaak Y. Tecle, Susan R. Strickler, Aureliano Bombarely, Thomas Fisher-York, Anuradha Pujar, Hartmut Foerster, Aimin Yan, Lukas A. Mueller - Nucleic Acids Research, Nucleic Acids Res. 2014 cited by 738
- Fern genomes elucidate land plant evolution and cyanobacterial symbioses
Authors: Fay‐Wei Li, Paul Brouwer, Lorenzo Carretero‐Paulet, Shifeng Cheng, Jan de Vries, Pierre‐Marc Delaux, Ariana Noel Eily, Nils Koppers, Li‐Yaung Kuo, Zheng Li, Mathew Simenc, Ian Small, Eric Wafula, Stephany Angarita, Michael S. Barker, Andrea Bräutigam, Claude W. dePamphilis, Sven B. Gould, Prashant S. Hosmani, Yao Moan Huang, Bruno Hüettel, Yoichiro Kato, Xin Liu, Steven Maere, Rose McDowell, Lukas A. Mueller, Klaas G.J. Nierop, Stefan A. Rensing, Tanner A. Robison, Carl J. Rothfels, Erin M. Sigel, Yue Song, Prakash Raj Timilsena, Yves Van de Peer, Hongli Wang, Per K.I. Wilhelmsson, Paul G. Wolf, Xun Xu, Joshua P. Der, Henriette Schluepmann, Gane Ka‐Shu Wong, Kathleen M. Pryer - Nature Plants 2018 cited by 540
- An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps
Authors: Prashant S. Hosmani, Mirella Flores-Gonzalez, Henri van de Geest, Florian Maumus, Linda V. Bakker, Elio Schijlen, Jan C. van Haarst, Jan Cordewener, Gabino Sanchez‐Perez, Sander Peters, Zhangjun Fei, James J. Giovannoni, Lukas A. Mueller, Surya Saha - 2019 cited by 302
- The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
Authors: Shaogui Guo, Jianguo Zhang, Honghe Sun, Jérôme Salse, William J. Lucas, Haiying Zhang, Yi Zheng, Linyong Mao, Yi Ren, Zhiwen Wang, Jiumeng Min, Xiaosen Guo, Florent Murat, Byung‐Kook Ham, Zhaoliang Zhang, Shan Gao, Mingyun Huang, Yimin Xu, Silin Zhong, Aureliano Bombarely, Lukas A. Mueller, Hong Zhao, Hongju He, Yan Zhang, Zhonghua Zhang, Sanwen Huang, Tao Tan, Erli Pang, Kui Lin, Qun Hu, Hanhui Kuang, Peixiang Ni, Bo Wang, Jingan Liu, Qinghe Kou, Wenju Hou, Xiaohua Zou, Jiao Jiang, Guoyi Gong, Kathrin Klee, Heiko Schoof, Ying Huang, Xuesong Hu, Shanshan Dong, Dequan Liang, Juan Wang, Kui Wu, Yang Xia, Xiang Zhao, Zequn Zheng, Miao Xing, Xinming Liang, Bangqing Huang, Tian Lv, Junyi Wang, Ye Yin, Hongping Yi, Ruiqiang Li, Mingzhu Wu, Amnon Levi, Xingping Zhang, James J. Giovannoni, Jun Wang, Yunfu Li, Zhangjun Fei, Yong Xu - Nature Genetics 2012 cited by 829
- A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency
Authors: Kieron D. Edwards, Noé Fernández‐Pozo, Katherine E. Drake-Stowe, M. Humphry, Andrew Evans, Aureliano Bombarely, F H Allen, Rachel Hurst, Benjamen White, Sheri P. Kernodle, Jennifer R. Bromley, J. P. Sanchez-Tamburrino, Ramsey S. Lewis, Lukas A. Mueller - BMC Genomics 2017 cited by 432
- High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening
Authors: Yoshihito Shinozaki, Philippe Nicolas, Noé Fernández‐Pozo, Qiyue Ma, Daniel Evanich, Yanna Shi, Yimin Xu, Yi Zheng, Stephen I Snyder, Laetitia B. B. Martin, Eliel Ruíz-May, Theodore W. Thannhauser, Kunsong Chen, David S. Domozych, Carmen Catalá, Zhangjun Fei, Lukas A. Mueller, James J. Giovannoni, Jocelyn K. C. Rose - Nature Communications 2018 cited by 400
- AN9, a Petunia Glutathione S-Transferase Required for Anthocyanin Sequestration, Is a Flavonoid-Binding Protein
Authors: Lukas A. Mueller, C.D. Goodman, Rebecca A. Silady, Virginia Walbot - PLANT PHYSIOLOGY 2000 cited by 425
- Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
Authors: Aureliano Bombarely, Michel Moser, Avichai Amrad, Manzhu Bao, Laure Bapaume, Cornelius S. Barry, Mattijs Bliek, Maaike R. Boersma, Lorenzo Borghi, Rémy Bruggmann, Marcel Bucher, Nunzio D’Agostino, Kevin M. Davies, Uwe Druege, Natalia Dudareva, Marcos Egea‐Cortines, Massimo Delledonne, Noé Fernández‐Pozo, Philipp Franken, Laurie Grandont, J. S. Heslop‐Harrison, Jennifer D. Hintzsche, Mitrick A. Johns, Ronald Koes, Xiaodan Lv, Eric Lyons, Diwa Malla, Enrico Martinoia, Neil Mattson, P. Morel, Lukas A. Mueller, Joëlle K. Mühlemann, Eva Nouri, Valentina Passeri, Mario Pezzotti, Qinzhou Qi, Didier Reinhardt, Mélanie K. Rich, Katja R. Richert‐Pöggeler, Timothy P. Robbins, Michael C. Schatz, M. Eric Schranz, Robert C. Schuurink, Trude Schwarzacher, Kees Spelt, Haibao Tang, Susan L. Urbanus, Michiel Vandenbussche, Kitty Vijverberg, Gonzalo Villarino, Ryan M. Warner, Julia Weiß, Zhen Yue, Jan Zethof, Francesca Quattrocchio, Thomas L. Sims, Cris Kuhlemeier - Nature Plants 2016 cited by 396
- The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
Authors: Seung Yon Rhee, William D. Beavis, Tanya Z. Berardini, Guanghong Chen, David A. Dixon, Aisling Doyle, Margarita Garcia-Hernandez, Eva Huala, Gabriel Lander, Mary Montoya, Neil Miller, Lukas A. Mueller, Suparna Mundodi, Leonore Reiser, Julie Tacklind, Dan C. Weems, Yihe Wu, Iris Xu, Daniel Yoo, Jungwon Yoon, Peifen Zhang - Nucleic Acids Research, Nucleic Acids Res. 2003 cited by 924
- A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research
Authors: Aureliano Bombarely, Hernán G. Rosli, Julia Vrebalov, Peter Moffett, Lukas A. Mueller, Gregory B. Martin - Molecular Plant-Microbe Interactions 2012 cited by 520
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Authors: Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp - Nucleic Acids Research, Nucleic Acids Res. 2011 cited by 608
- De novo assembly of the zucchini genome reveals a whole‐genome duplication associated with the origin of the Cucurbita genus
Authors: Javier Montero‐Pau, José Blanca, Aureliano Bombarely, Pello Ziarsolo, Cristina Esteras, Carlos Martí‐Gómez, María Ferriol, Pedro Gómez, Manuel Jamilena, Lukas A. Mueller, Belén Picó, Joaquı́n Cañizares - Plant Biotechnology Journal 2017 cited by 204
- The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
Authors: Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan R. Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidânis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J. Krabbenhoft, Zhen Qin Wang, Steven J. Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Grégory Lefebvre, Sylviane Métairon, D Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant‐Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F. Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Wai, Nicolas Dauchot, Simón Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero‐Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lílian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert J Henry, Pierre Marraccini, Yves Van de Peer, Alan Carvalho Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas A. Mueller, Luiz Filipe Protásio Pereira, Stéphane Plaisance, Valérie Poncet, Stéphane Rombauts, David Sankoff, Victor A. Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes - Nature Genetics 2024 cited by 85
- TAIR: a resource for integrated Arabidopsis data
Authors: M. Garcia-Hernandez, Tanya Berardini, Guang‐Hong Chen, Debbie Crist, Aisling Doyle, Eva Huala, Emma M. Knee, Mark Lambrecht, Neil Miller, Lukas A. Mueller, Suparna Mundodi, Leonore Reiser, Seung Y. Rhee, Randy Scholl, Julie Tacklind, Dan Weems, Yihe Wu, Iris Xu, Daniel Yoo, Jungwon Yoon, Peifen Zhang - Functional & Integrative Genomics 2002 cited by 269
- The SGN VIGS Tool: User-Friendly Software to Design Virus-Induced Gene Silencing (VIGS) Constructs for Functional Genomics
Authors: Noé Fernández‐Pozo, Hernán G. Rosli, Gregory B. Martin, Lukas A. Mueller - Molecular Plant 2015 cited by 246
- Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
Authors: Xin Wang, Lei Gao, Chen Jiao, Stefanos Stravoravdis, Prashant S. Hosmani, Surya Saha, Jing Zhang, Samantha Mainiero, Susan R. Strickler, Carmen Catalá, Gregory B. Martin, Lukas A. Mueller, Julia Vrebalov, James J. Giovannoni, Shan Wu, Zhangjun Fei - Nature Communications 2020 cited by 156
- BrAPI - an application programming interface for plant breeding applications
Authors: Peter Selby, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar E. Benites-Alfaro, Clayton L. Birkett, Viana C. Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Vasques Costa, Jeremy D. Edwards, Richard Finkers, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian, Patrick König, Jack Elendil B. Lagare, Matthias Lange, Marie-Angélique Laporte, Pierre Larmande, David S. LeBauer, David A. Lyon, David F. Marshall, Dave Matthews, Iain Milne, Naymesh Mistry, Nicolas Morales, Lukas A. Mueller, Pascal Neveu, Evangelia Papoutsoglou, Brian Pearce, Ivan Perez-Masias, Cyril Pommier, Ricardo H. Ramirez-Gonzalez, Abhishek Rathore, Angel Manica Raquel, Sebastian Raubach, Trevor Rife, Kelly Robbins, Mathieu Rouard, Chaitanya Sarma, Uwe Scholz, Guilhem Sempéré, Paul D. Shaw, Reinhard Simon, Nahuel Soldevilla, Gordon Stephen, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden, BrAPI Consortium - Bioinformatics, Bioinform. 2019 cited by 135
- Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding
Authors: Vered Tzin, Yuko Hojo, Susan R. Strickler, Lee Julia Bartsch, Cairo M. Archer, Kevin R. Ahern, Shaoqun Zhou, Shawn A. Christensen, Ivan Gális, Lukas A. Mueller, Georg Jander - Journal of Experimental Botany 2017 cited by 134
- The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
Authors: Eva Huala, Allan Dickerman, Margarita Garcia-Hernandez, Danforth Weems, Leonore Reiser, Frank LaFond, David Hanley, Donald Kiphart, Mingzhe Zhuang, Wen Huang, Lukas A. Mueller, Debika Bhattacharyya, Devaki Bhaya, Bruno W. S. Sobral, William D. Beavis, David Meinke, Christopher D. Town, Chris Somerville, Seung Yon Rhee - Nucleic Acids Research, Nucleic Acids Res. 2001 cited by 585
- A Dynamic Interface for Capsaicinoid Systems Biology
Authors: Michael Mazourek, Anuradha Pujar, Yelena Borovsky, Ilan Paran, Lukas A. Mueller, Molly Jahn - PLANT PHYSIOLOGY 2009 cited by 177
- Sequencing‐Based Bin Map Construction of a Tomato Mapping Population, Facilitating High‐Resolution Quantitative Trait Loci Detection
Authors: Itay Gonda, Hamid Ashrafi, David Lyon, Susan R. Strickler, Amanda M. Hulse‐Kemp, Qiyue Ma, Honghe Sun, Kevin Stoffel, Adrian F. Powell, Stephanie Futrell, Theodore W. Thannhauser, Zhangjun Fei, A. E. Van Deynze, Lukas A. Mueller, James J. Giovannoni, Majid R. Foolad - The Plant Genome 2018 cited by 109
