Modesto Orozco
Active 1988–2025
- 232
- Papers
- 28,961
- Citations
- 93
- h-index
- 207
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology59%
- Medicine19.9%
- Computer Science6.1%
- Chemistry3.8%
- Physics and Astronomy3%
- Materials Science1.9%
- Other6.3%
Topics
- Protein Structure and Dynamics5.7%
- RNA and protein synthesis mechanisms5.4%
- DNA and Nucleic Acid Chemistry5.3%
- Computational Drug Discovery Methods4.6%
- RNA modifications and cancer2.8%
- Advanced biosensing and bioanalysis techniques2.6%
- Other73.6%
Coauthors
- F. Javier Luque77
- Josep Lluis Gelpí40
- Alberto Pérez23
- Pablo D. Dans22
- Federica Battistini21
- Adam Hospital17
- Charles A. Laughton15
- Xavier Barril15
- Xavier de la Cruz13
- Carles Ferrer-Costa12
- Carlos González12
- Guillem Portella12
- Isabelle Brun‐Heath12
- Jiřı́ Šponer12
- Robert Soliva12
- Manuel Rueda10
- Pau Andrio10
- Genís Bayarri9
- Agnes Noy8
- Montserrat Terrazas8
- Filip Lankaš7
- Francesco Colizzi7
- Jürgen Walther7
- Marta Gut7
All papers
- Parmbsc1: a refined force field for DNA simulations
Authors: Iván Ivani, Pablo D. Dans, Agnes Noy, Alberto Pérez, Ignacio Faustino, Jürgen Walther, Pau Andrio, Ramón Goñi, Alexandra Balaceanu, Guillem Portella, Federica Battistini, Josep Lluis Gelpí, Carlos González, Michele Vendruscolo, Charles A. Laughton, Sarah A. Harris, David A. Case, Modesto Orozco - Nature Methods 2015 cited by 1,198
- Molecular dynamics simulations: advances and applications
Authors: Josep Lluís Gelpí, Adam Hospital, Ramón Goñi, Modesto Orozco - Advances and Applications in Bioinformatics and Chemistry 2015 cited by 819
- Deficient Endoplasmic Reticulum-Mitochondrial Phosphatidylserine Transfer Causes Liver Disease
Authors: María Isabel Hernández‐Álvarez, David Sebastián, Sara Vives, Saška Ivanova, Paola Bartoccioni, Pâmela A. Kakimoto, Natàlia Plana, Sónia R. Veiga, Vanessa Hernández, Nuno Vasconcelos, Gopal Peddinti, Anna Adrover, Mariona Jové, Reinald Pamplona, Isabel Gordaliza‐Alaguero, Enrique Calvo, Noemí Cabré, Rui E. Castro, Antonija Kuzmanic, Marie Boutant, David Sala, Tuulia Hyötyläinen, Matej Orešič, Joana Fort, Ekaitz Errasti‐Murugarren, Cecília M. P. Rodrigues, Modesto Orozco, Jorge Joven, Carles Cantó, Manuel Palacı́n, Sonia Fernández‐Veledo, Joan Vendrell, António Zorzano - Cell 2019 cited by 399
- Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of α/γ Conformers
Authors: Alberto Pérez, Ivan Marchán, Daniel Svozil, Jiřı́ Šponer, Thomas E. Cheatham, Charles A. Laughton, Modesto Orozco - Biophysical Journal 2007 cited by 2,231
- Splice variants of mitofusin 2 shape the endoplasmic reticulum and tether it to mitochondria
Authors: Déborah Naón, María Isabel Hernández‐Álvarez, Satoko Shinjo, Miłosz Wieczór, Saška Ivanova, Olga Martins de Brito, Albert Quintana, Juan Hidalgo, Manuel Palacı́n, Pilar Aparicio, Juan Castellanos, Luis Lores, David Sebastián, Sonia Fernández‐Veledo, Joan Vendrell, Jorge Joven, Modesto Orozco, António Zorzano, Luca Scorrano - Science 2023 cited by 141
- Colibactin DNA-damage signature indicates mutational impact in colorectal cancer
Authors: Paulina J. Dziubańska-Kusibab, Hilmar Berger, Federica Battistini, Britta A. M. Bouwman, Amina Iftekhar, Riku Katainen, Tatiana Cajuso, Nicola Crosetto, Modesto Orozco, Lauri A. Aaltonen, Thomas F. Meyer - Nature Medicine 2020 cited by 320
- Epigenetic loss of RNA-methyltransferase NSUN5 in glioma targets ribosomes to drive a stress adaptive translational program
Authors: Maxime Janin, Vanessa Ortiz-Barahona, Manuel Castro de Moura, Anna Martínez‐Cardús, Pere Llinàs‐Arias, Marta Soler, Daphna Nachmani, Joffrey Pelletier, Ulrike Schümann, María Eréndira Calleja-Cervantes, Sebastián Morán, Sònia Guil, Alberto Bueno-Costa, David Piñeyro, Montserrat Pérez-Salvia, Margalida Rosselló-Tortella, Laia Piqué, Joan Josep Bech‐Serra, Carolina de la Torre, August Vidal, María Martínez‐Iniesta, Juan F. Martín-Tejera, Alberto Villanueva, Alexandra Arias, Isabel Cuartas, Ana M. Aransay, Andrés Morales La Madrid, Ángel M. Carcaboso, Vicente Santa‐María, Jaume Mora, Agustín F. Fernández, Mario F. Fraga, Ibán Aldecoa, Leire Pedrosa, Francesc Graus, Noemí Vidal, Fina Martínez‐Soler, Avelina Tortosa, Cristina Carrato, Carmen Balañá, Matthew W. Boudreau, Paul J. Hergenrother, Peter Kötter, Karl-Dieter Entian, Jürgen Hench, Stephan Frank, Sheila Mansouri, Gelareh Zadeh, Pablo D. Dans, Modesto Orozco, George Thomas, Sandra Blanco, Joan Seoane, Thomas Preiß, Pier Paolo Pandolfi, Manel Esteller - Acta Neuropathologica 2019 cited by 194
- Non-coding recurrent mutations in chronic lymphocytic leukaemia
Authors: Xosé S. Puente, Sı́lvia Beà, Rafael Valdés‐Mas, Neus Villamor, Jesús Gutiérrez‐Abril, José I. Martín‐Subero, Marta Munar, Carlota Rubio-Pérez, Pedro Jares, Marta Aymerich, Tycho Baumann, Renée Beekman, Laura Belver, Ana Carrió, Giancarlo Castellano, Guillem Clot, Enrique Colado, Dolors Colomer, Dolors Costa, Julio Delgado, Anna Enjuanes, Xavier Estivill, Adolfo A. Ferrando, Josep Lluis Gelpí, Blanca González‐Farré, Santiago González, Marcos González, Marta Gut, Jesús María Hernández‐Rivas, Mònica López‐Guerra, David Martin‐García, Alba Navarro, Pilar Nicolás, Modesto Orozco, Ángel Ramírez Páyer, Magda Pinyol, David G. Pisano, Diana Puente, Ana C. Queirós, Vı́ctor Quesada, Carlos Romeo-Casabona, Cristina Royo, Romina Royo, Marı́a Rozman, Núria Russiñol, Itziar Salaverría, Κώστας Σταματόπουλος, Hendrik G. Stunnenberg, David Tamborero, María José Terol, Alfonso Valencia, Núria López-Bigas, David Torrents, Marta Gut, Armando López‐Guillermo, Carlos López-Otı́n, Elı́as Campo - Nature 2015 cited by 858
- 4D Genome Rewiring during Oncogene-Induced and Replicative Senescence
Authors: Satish Sati, Boyan Bonev, Quentin Szabo, Daniel Jost, Paul Bensadoun, François Serra, Vincent Loubière, Giorgio L. Papadopoulos, Juan Carlos Rivera‐Mulia, Lauriane Fritsch, Pauline Bouret, David Castillo, Josep Lluís Gelpí, Modesto Orozco, Cédric Vaillant, Franck Pellestor, Frédéric Bantignies, Marc A. Martı́-Renom, David M. Gilbert, Jean-Marc Lemaı̂tre, Giacomo Cavalli - Molecular Cell 2020 cited by 172
- Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia
Authors: Xosé S. Puente, Magda Pinyol, Vı́ctor Quesada, Laura Peña Conde, Gonzalo R. Ordóñez, Neus Villamor, Geòrgia Escaramís, Pedro Jares, Sı́lvia Beà, Marcos González, Laia Bassaganyas, Tycho Baumann, Manel Juan, Mònica López‐Guerra, Dolors Colomer, José M. C. Tubío, Cristina López, Alba Navarro, Cristian Tornador, Marta Aymerich, Marı́a Rozman, Jesús María Hernández‐Rivas, Diana Puente, José M.P. Freije, Gloria Velasco, Ana Gutiérrez‐Fernández, Dolors Costa, Ana Carrió, Sara Guijarro, Anna Enjuanes, Luís Hernández, Jordi Yagüe, Pilar Nicolás, Carlos Romeo-Casabona, Heinz Himmelbauer, Ester Castillo, Juliane C. Dohm, Silvia de Sanjosé, Miguel Á. Piris, Enrique de Alava, Jesús F. San Miguel, Romina Royo, Josep Lluis Gelpí, David Torrents, Modesto Orozco, David G. Pisano, Alfonso Valencia, Roderic Guigó, Mónica Bayés, Simon Heath, Marta Gut, Peter Klatt, John Marshall, Keiran Raine, Lucy Stebbings, P. Andrew Futreal, Michael R. Stratton, Peter J. Campbell, Marta Gut, Armando López‐Guillermo, Xavier Estivill, Emili Montserrat, Carlos López-Otı́n, Elı́as Campo - Nature 2011 cited by 1,527
- Performance of Molecular Mechanics Force Fields for RNA Simulations: Stability of UUCG and GNRA Hairpins
Authors: Pavel Banáš, Daniel Hollas, Marie Zgarbová, Petr Jurečka, Modesto Orozco, Thomas E. Cheatham, Jiřı́ Šponer, Michal Otyepka - Journal of Chemical Theory and Computation 2010 cited by 411
- Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia
Authors: Vı́ctor Quesada, Laura Peña Conde, Neus Villamor, Gonzalo R. Ordóñez, Pedro Jares, Laia Bassaganyas, Andrew Ramsay, Sı́lvia Beà, Magda Pinyol, Alejandra Martínez‐Trillos, Mònica López‐Guerra, Dolors Colomer, Alba Navarro, Tycho Baumann, Marta Aymerich, Marı́a Rozman, Julio Delgado, Eva Giné, Jesús María Hernández‐Rivas, Marcos González, Diana Puente, Gloria Velasco, José M.P. Freije, José M. C. Tubío, Romina Royo, Josep Lluis Gelpí, Modesto Orozco, David G. Pisano, Jorge Zamora, Miguél Vázquez, Alfonso Valencia, Heinz Himmelbauer, Mónica Bayés, Simon Heath, Marta Gut, Marta Gut, Xavier Estivill, Armando López‐Guillermo, Xosé S. Puente, Elı́as Campo, Carlos López-Otı́n - Nature Genetics 2011 cited by 996
- Chromatin Unfolding by Epigenetic Modifications Explained by Dramatic Impairment of Internucleosome Interactions: A Multiscale Computational Study
Authors: Rosana Collepardo‐Guevara, Guillem Portella, Michele Vendruscolo, Daan Frenkel, Tamar Schlick, Modesto Orozco - Journal of the American Chemical Society 2015 cited by 191
- Impact of DNA methylation on 3D genome structure
Authors: Diana Buitrago, Mireia Labrador, Juan Pablo Arcon, Rafael Lema, Oscar Flores, Anna Esteve‐Codina, Julie Blanc, Núria Villegas, David Bellido, Marta Gut, Pablo D. Dans, Simon Heath, Marta Gut, Isabelle Brun‐Heath, Modesto Orozco - Nature Communications 2021 cited by 157
- Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia
Authors: Marta Kulis, Simon Heath, Marina Bibikova, Ana C. Queirós, Alba Navarro, Guillem Clot, Alejandra Martínez‐Trillos, Giancarlo Castellano, Isabelle Brun‐Heath, Magda Pinyol, Sergio Barberán-Soler, Panagiotis Papasaikas, Pedro Jares, Sı́lvia Beà, Daniel Rico, Simone Ecker, Miriam Rubio, Romina Royo, Vincent Ho, Brandy Klotzle, Luís Hernández, Laura Peña Conde, Mònica López‐Guerra, Dolors Colomer, Neus Villamor, Marta Aymerich, Marı́a Rozman, Mónica Bayés, Marta Gut, Josep Lluis Gelpí, Modesto Orozco, Jian‐Bing Fan, Vı́ctor Quesada, Xosé S. Puente, David G. Pisano, Alfonso Valencia, Armando López‐Guillermo, Marta Gut, Carlos López-Otı́n, Elı́as Campo, José I. Martín‐Subero - Nature Genetics 2012 cited by 589
- A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort
Authors: Daniel Beltrán, Josep Lluis Gelpí, Modesto Orozco - Nucleic Acids Research 2023 cited by 35
- DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors
Authors: Sandro Barissi, Alba Sala, Miłosz Wieczór, Federica Battistini, Modesto Orozco - Nucleic Acids Research 2022 cited by 38
- PMut: a web-based tool for the annotation of pathological variants on proteins, 2017 update
Authors: Víctor López-Ferrando, Andrea M. Gazzo, Xavier de la Cruz, Modesto Orozco, Josep Lluís Gelpí - Nucleic Acids Research, Nucleic Acids Res. 2017 cited by 263
- Deciphering the mechanical code of the genome and epigenome
Authors: Aakash Basu, Dmitriy G. Bobrovnikov, Basilio Cieza, Juan Pablo Arcon, Zan Qureshi, Modesto Orozco, Taekjip Ha - Nature Structural & Molecular Biology 2022 cited by 65
- Multiscale simulation of DNA
Authors: Pablo D. Dans, Jürgen Walther, Hansel Gómez, Modesto Orozco - Current Opinion in Structural Biology 2015 cited by 172
- μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA
Authors: Marco Pasi, John H. Maddocks, David L. Beveridge, Thomas C. Bishop, David A. Case, Thomas E. Cheatham, Pablo D. Dans, B. Jayaram, Filip Lankaš, Charles A. Laughton, Jonathan S. Mitchell, Roman Osman, Modesto Orozco, Alberto Pérez, Daiva Petkevičiūtė-Gerlach, Nad’a Špačková, Jiřı́ Šponer, K. Zakrzewska, Richard Lavery - Nucleic Acids Research 2014 cited by 214
- A synthetic genetic polymer with an uncharged backbone chemistry based on alkyl phosphonate nucleic acids
Authors: Sebastian Arangundy‐Franklin, Alexander I. Taylor, Benjamin T. Porebski, Vito Genna, Sew‐Yeu Peak‐Chew, Alexandra Vaisman, Roger Woodgate, Modesto Orozco, Philipp Holliger - Nature Chemistry 2019 cited by 107
- The structural impact of DNA mismatches
Authors: Giulia Rossetti, Pablo D. Dans, Irene Gómez‐Pinto, Iván Ivani, Carlos González, Modesto Orozco - Nucleic Acids Research 2015 cited by 144
- pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs
Authors: Israel Serrano‐Chacón, Bartomeu Mir, Lorenzo Cupellini, Francesco Colizzi, Modesto Orozco, Núria Escaja, Carlos González - Journal of the American Chemical Society 2023 cited by 37
