litlas
Log inCreate account

Rhiju Das

Active 2001–2025

131
Papers
21,052
Citations
70
h-index
127
i10-index

Citations

Citations per year for Rhiju Das1905: 1 citations1952: 1 citations1986: 1 citations1989: 1 citations1992: 1 citations1996: 1 citations1997: 1 citations1999: 3 citations2000: 1 citations2001: 4 citations2002: 2 citations2003: 5 citations2004: 5 citations2005: 25 citations2006: 23 citations2007: 40 citations2008: 86 citations2009: 105 citations2010: 137 citations2011: 176 citations2012: 168 citations2013: 195 citations2014: 187 citations2015: 260 citations2016: 229 citations2017: 271 citations2018: 246 citations2019: 633 citations2020: 955 citations2021: 1,019 citations2022: 927 citations2023: 898 citations2024: 1,280 citations2025: 762 citations2026: 65 citations1906–1951: no citations, so these years are not shown1953–1985: no citations, so these years are not shown1987–1988: no citations, so these years are not shown1990–1991: no citations, so these years are not shown1993–1995: no citations, so these years are not shown1998: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,260 citing papers, 35.9% of this breakdownChina: 982 citing papers, 10.8% of this breakdownGermany: 591 citing papers, 6.5% of this breakdownUnited Kingdom: 564 citing papers, 6.2% of this breakdownFrance: 351 citing papers, 3.9% of this breakdownCanada: 269 citing papers, 3% of this breakdownSwitzerland: 241 citing papers, 2.6% of this breakdownItaly: 189 citing papers, 2.1% of this breakdownJapan: 186 citing papers, 2% of this breakdownSpain: 173 citing papers, 1.9% of this breakdownNetherlands: 164 citing papers, 1.8% of this breakdownPoland: 156 citing papers, 1.7% of this breakdown
0%35.9%Other 21.6%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology71.2%
  • Medicine12%
  • Computer Science4.5%
  • Materials Science2.6%
  • Immunology and Microbiology2%
  • Chemistry1.5%
  • Other6.2%

Topics

  • RNA and protein synthesis mechanisms12.9%
  • Protein Structure and Dynamics8.2%
  • RNA modifications and cancer6.5%
  • RNA Research and Splicing6.4%
  • Enzyme Structure and Function4%
  • Computational Drug Discovery Methods2.6%
  • Other59.4%

Coauthors

All papers

Open in search
  1. The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design

    Authors: Rebecca F. Alford, Andrew Leaver‐Fay, Jeliazko R. Jeliazkov, Matthew J. O’Meara, Frank DiMaio, Hahnbeom Park, Maxim V. Shapovalov, P. Douglas Renfrew, Vikram Khipple Mulligan, Kalli Kappel, Jason W. Labonte, Michael S. Pacella, Richard Bonneau, Philip Bradley, Roland L. Dunbrack, Rhiju Das, David Baker, Brian Kuhlman, Tanja Kortemme, Jeffrey J. Gray - Journal of Chemical Theory and Computation 2017 cited by 1,570

  2. Macromolecular modeling and design in Rosetta: recent methods and frameworks

    Authors: Julia Koehler Leman, Brian D. Weitzner, Steven M. Lewis, Jared Adolf‐Bryfogle, Nawsad Alam, Rebecca F. Alford, Melanie L. Aprahamian, David Baker, Kyle A. Barlow, Patrick Barth, Benjamin Basanta, Brian J. Bender, Kristin Blacklock, Jaume Bonet, Scott E. Boyken, Phil Bradley, Chris Bystroff, Patrick Conway, Seth Cooper, Bruno E. Correia, Brian Coventry, Rhiju Das, René M. de Jong, Frank DiMaio, Lorna Dsilva, Roland L. Dunbrack, Alexander S. Ford, Brandon Frenz, Darwin Fu, Caleb Geniesse, Lukasz Goldschmidt, Ragul Gowthaman, Jeffrey J. Gray, Dominik Gront, Sharon L. Guffy, Scott Horowitz, Po‐Ssu Huang, Thomas Huber, Timothy M. Jacobs, Jeliazko R. Jeliazkov, David K. Johnson, Kalli Kappel, John Karanicolas, Hamed Khakzad, Karen R. Khar, Sagar D. Khare, Firas Khatib, Alisa Khramushin, Indigo C. King, Robert Kleffner, Brian Koepnick, Tanja Kortemme, Georg Kuenze, Brian Kuhlman, Daisuke Kuroda, Jason W. Labonte, Jason Lai, Gideon Lapidoth, Andrew Leaver‐Fay, Steffen Lindert, Thomas W. Linsky, Nir London, Joseph H. Lubin, Sergey Lyskov, Jack B. Maguire, Lars Malmström, Enrique Marcos, Orly Marcu, Nicholas Marze, Jens Meiler, Rocco Moretti, Vikram Khipple Mulligan, Santrupti Nerli, Christoffer Norn, Shane Ó’Conchúir, Noah Ollikainen, Sergey Ovchinnikov, Michael S. Pacella, Xingjie Pan, Hahnbeom Park, Ryan E. Pavlovicz, Manasi A. Pethe, Brian G. Pierce, Kala Bharath Pilla, Barak Raveh, P. Douglas Renfrew, Shourya S. Roy Burman, Aliza B. Rubenstein, Marion F. Sauer, Andreas Scheck, William R. Schief, Ora Schueler‐Furman, Yuval Sedan, Alexander M. Sevy, Nikolaos G. Sgourakis, Lei Shi, Justin B. Siegel, Daniel‐Adriano Silva, Shannon T. Smith, Yifan Song and 8 more - Nature Methods 2020 cited by 923

  3. Functional 5′ UTR mRNA structures in eukaryotic translation regulation and how to find them

    Authors: Kathrin Leppek, Rhiju Das, Maria Barna - Nature Reviews Molecular Cell Biology 2017 cited by 974

  4. Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics

    Authors: Kathrin Leppek, Gun Woo Byeon, Wipapat Kladwang, Hannah K. Wayment-Steele, Craig H. Kerr, Adele Xu, Do Soon Kim, Ved V. Topkar, Christian A. Choe, Daphna Rothschild, Gerald C. Tiu, Roger Wellington-Oguri, Kotaro Fujii, Eesha Sharma, Andrew M. Watkins, John J. Nicol, Jonathan Romano, Bojan Tunguz, Fernando Dı́az, Hui Cai, Pengbo Guo, Jiewei Wu, Fanyu Meng, Shuai Shi, Eterna Participants, Philip R. Dormitzer, Alicia Solórzano, Maria Barna, Rhiju Das - Nature Communications 2022 cited by 388

  5. Rosetta3

    Authors: Andrew Leaver‐Fay, Michael D. Tyka, Steven M. Lewis, Oliver F. Lange, James Thompson, Ron Jacak, Kristian W. Kaufman, P. Douglas Renfrew, Colin A. Smith, William Sheffler, Ian Davis, Seth Cooper, Adrien Treuille, Daniel J. Mandell, Florian Richter, Yih‐En Andrew Ban, Sarel J. Fleishman, Jacob E. Corn, David E. Kim, Sergey Lyskov, Monica Berrondo, Stuart Mentzer, Zoran Popović, James J. Havranek, John Karanicolas, Rhiju Das, Jens Meiler, Tanja Kortemme, Jeffrey J. Gray, Brian Kuhlman, David Baker, Philip Bradley - Methods in enzymology on CD-ROM/Methods in enzymology 2010 cited by 2,008

  6. Geometric deep learning of RNA structure

    Authors: Raphael J.L. Townshend, Stephan Eismann, Andrew M. Watkins, Ramya Rangan, Masha Karelina, Rhiju Das, Ron O. Dror - Science 2021 cited by 443

  7. Spontaneous driving forces give rise to protein−RNA condensates with coexisting phases and complex material properties

    Authors: Steven Boeynaems, Alex S. Holehouse, Venera Weinhardt, Dénes Kovács, Joris Van Lindt, Carolyn A. Larabell, Ludo Van Den Bosch, Rhiju Das, Péter Tompa, Rohit V. Pappu, Aaron D. Gitler - National Academy of Sciences, Proceedings of the National Academy of Sciences 2019 cited by 560

  8. Assessment of three‐dimensional RNA structure prediction in CASP15

    Authors: Rhiju Das, Rachael C. Kretsch, Adam J. Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan, Fan Bu, Ronan M. Keegan, Maya Topf, Daniel J. Rigden, Zhichao Miao, Éric Westhof - Proteins Structure Function and Bioinformatics 2023 cited by 152

  9. FARFAR2: Improved De Novo Rosetta Prediction of Complex Global RNA Folds

    Authors: Andrew M. Watkins, Ramya Rangan, Rhiju Das - Structure 2020 cited by 284

  10. RNA secondary structure packages evaluated and improved by high-throughput experiments

    Authors: Hannah K. Wayment-Steele, Wipapat Kladwang, Alexandra I. Strom, Jeehyung Lee, Adrien Treuille, Alexander J. Becka, Eterna Participants, Rhiju Das - Nature Methods 2022 cited by 136

  11. Macromolecular Modeling with Rosetta

    Authors: Rhiju Das, David Baker - Annual Review of Biochemistry 2008 cited by 1,021

  12. RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

    Authors: Zhichao Miao, Ryszard W. Adamiak, Maciej Antczak, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen, Clarence Yu Cheng, Yi Cheng, Fang‐Chieh Chou, Rhiju Das, Nikolay V. Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, A. Krokhotin, Marcin Magnus, Olivier Mailhot, François Major, Thomas H. Mann, Paweł Piątkowski, Radosław Pluta, Mariusz Popenda, Joanna Sarzyńska, Lizhen Sun, Marta Szachniuk, Siqi Tian, Jian Wang, Jun Wang, Andrew M. Watkins, Jakub Wiedemann, Yi Xiao, Xiaojun Xu, Joseph D. Yesselman, Dong Zhang, Yi Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Żok, Adriana Żyła, Aiming Ren, Robert Batey, Barbara L. Golden, Lin Huang, David M.J. Lilley, Yijin Liu, Dinshaw J. Patel, Éric Westhof - RNA 2020 cited by 172

  13. A unified mechanism for intron and exon definition and back-splicing

    Authors: Xueni Li, Shiheng Liu, Lingdi Zhang, Aaron Issaian, Ryan C. Hill, Sara Espinosa, Shasha Shi, Yanxiang Cui, Kalli Kappel, Rhiju Das, Kirk C. Hansen, Zixuan Zhou, Rui Zhao - Nature 2019 cited by 184

  14. Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome

    Authors: Kaiming Zhang, Ivan N. Zheludev, Rachel J. Hagey, Raphael Haslecker, Yixuan J. Hou, Rachael C. Kretsch, Grigore Pintilie, Ramya Rangan, Wipapat Kladwang, Shanshan Li, Marie Teng-Pei Wu, Edward A. Pham, Claire Bernardin-Souibgui, Ralph S. Baric, Timothy P. Sheahan, Victoria D′Souza, Jeffrey S. Glenn, Wah Chiu, Rhiju Das - Nature Structural & Molecular Biology 2021 cited by 171

  15. Understanding Nucleic Acid–Ion Interactions

    Authors: Jan Lipfert, Sebastian Doniach, Rhiju Das, Daniel Herschlag - Annual Review of Biochemistry 2014 cited by 498

  16. Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

    Authors: Kalli Kappel, Kaiming Zhang, Zhaoming Su, Andrew M. Watkins, Wipapat Kladwang, Shanshan Li, Grigore Pintilie, Ved V. Topkar, Ramya Rangan, Ivan N. Zheludev, Joseph D. Yesselman, Wah Chiu, Rhiju Das - Nature Methods 2020 cited by 190

  17. Structure of human telomerase holoenzyme with bound telomeric DNA

    Authors: George E. Ghanim, Adam J. Fountain, Anne‐Marie M. van Roon, Ramya Rangan, Rhiju Das, Kathleen Collins, Thi Hoang Duong Nguyen - Nature 2021 cited by 202

  18. Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

    Authors: Sergey Lyskov, Fang‐Chieh Chou, Shane Ó Conchúir, Bryan S. Der, Kevin Drew, Daisuke Kuroda, Jianqing Xu, Brian D. Weitzner, P. Douglas Renfrew, Parin Sripakdeevong, Benjamin Borgo, James J. Havranek, Brian Kuhlman, Tanja Kortemme, Richard Bonneau, Jeffrey J. Gray, Rhiju Das - PLoS ONE 2013 cited by 458

  19. RNA-Puzzles : A CASP-like evaluation of RNA three-dimensional structure prediction

    Authors: José Almeida Cruz, Marc-Frédérick Blanchet, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen, Song Cao, Rhiju Das, Feng Ding, Nikolay V. Dokholyan, Samuel Coulbourn Flores, Lili Huang, Christopher A. Lavender, Véronique Lisi, François Major, Katarzyna Mikołajczak, Dinshaw J. Patel, Anna Philips, Tomasz Puton, John SantaLucia, Fredrick Sijenyi, Thomas Hermann, Kristian Rother, Magdalena B. Rother, Alexander Serganov, Marcin Skorupski, Tomasz Sołtysiński, Parin Sripakdeevong, Irina Tuszyńska, Kevin M. Weeks, Christina Waldsich, Michael Wildauer, Neocles B. Leontis, Éric Westhof - RNA 2012 cited by 312

  20. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

    Authors: Zhichao Miao, Ryszard W. Adamiak, Maciej Antczak, Robert T. Batey, Alexander J. Becka, Marcin Biesiada, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen, Clarence Yu Cheng, Fang‐Chieh Chou, A.R. Ferré-D′Amaré, Rhiju Das, Wayne K. Dawson, Feng Ding, Nikolay V. Dokholyan, Stanisław Dunin-Horkawicz, Caleb Geniesse, Kalli Kappel, Wipapat Kladwang, A. Krokhotin, Grzegorz Łach, François Major, Thomas H. Mann, Marcin Magnus, Katarzyna Pachulska‐Wieczorek, Dinshaw J. Patel, Joseph A. Piccirilli, Mariusz Popenda, Katarzyna J. Purzycka, Aiming Ren, Greggory M. Rice, John SantaLucia, Joanna Sarzyńska, Marta Szachniuk, Arpit Tandon, J.J. Trausch, Siqi Tian, Jian Wang, Kevin M. Weeks, Benfeard Williams, Yi Xiao, Xiaojun Xu, Dong Zhang, Tomasz Żok, Éric Westhof - RNA 2017 cited by 205

  21. RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look

    Authors: Ramya Rangan, Ivan N. Zheludev, Rachel J. Hagey, Edward A. Pham, Hannah K. Wayment-Steele, Jeffrey S. Glenn, Rhiju Das - RNA 2020 cited by 291

  22. Automated de novo prediction of native-like RNA tertiary structures

    Authors: Rhiju Das, David Baker - National Academy of Sciences, Proceedings of the National Academy of Sciences 2007 cited by 456

  23. RNA design rules from a massive open laboratory

    Authors: Jeehyung Lee, Wipapat Kladwang, Min Jae Lee, Daniel Cantu, Martin Azizyan, Hanjoo Kim, Alex Limpaecher, Snehal Gaikwad, Sungroh Yoon, Adrien Treuille, Rhiju Das, EteRNA Participants - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 cited by 320

  24. RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

    Authors: Zhichao Miao, Ryszard W. Adamiak, Marc-Frédérick Blanchet, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen, Clarence Yu Cheng, Grzegorz Chojnowski, Fang‐Chieh Chou, Pablo Cordero, José Almeida Cruz, A.R. Ferré-D′Amaré, Rhiju Das, Feng Ding, Nikolay V. Dokholyan, Stanisław Dunin-Horkawicz, Wipapat Kladwang, A. Krokhotin, Grzegorz Łach, Marcin Magnus, François Major, Thomas H. Mann, Benoı̂t Masquida, Dorota Matelska, Mélanie Meyer, Alla Peselis, Mariusz Popenda, Katarzyna J. Purzycka, Alexander Serganov, Juliusz Stasiewicz, Marta Szachniuk, Arpit Tandon, Siqi Tian, Jian Wang, Yi Xiao, Xiaojun Xu, Jinwei Zhang, Peinan Zhao, Tomasz Żok, Éric Westhof - RNA 2015 cited by 208