Sándor Vajda
Active 1981–2026
- Also published as
- Sandor Vajda
- 153
- Papers
- 20,804
- Citations
- 69
- h-index
- 134
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology55.6%
- Computer Science15.8%
- Medicine14.8%
- Immunology and Microbiology2.4%
- Chemistry1.7%
- Materials Science1.6%
- Other8.1%
Topics
- Protein Structure and Dynamics11.7%
- Computational Drug Discovery Methods9.9%
- Enzyme Structure and Function4.9%
- vaccines and immunoinformatics approaches4.1%
- Monoclonal and Polyclonal Antibodies Research3.4%
- RNA and protein synthesis mechanisms3%
- Other63%
Coauthors
- Dima Kozakov79
- Dmitri Beglov36
- David R. Hall19
- Ioannis Ch. Paschalidis18
- Pirooz Vakili17
- Carlos J. Camacho16
- Adrian Whitty15
- Dzmitry Padhorny12
- Sergei Kotelnikov11
- George Jones10
- Ryan Brenke9
- Stephen R. Comeau9
- Bing Xia8
- Diane Joseph-McCarthy8
- Israel Desta8
- Kathryn A. Porter8
- Megan Egbert8
- Tanggis Bohnuud8
- Amanda Wakefield7
- Charles DeLisi7
- Hanieh Mirzaei7
- Paul A. Bates7
- Scott E. Mottarella7
- Yang Shen7
All papers
- The ClusPro web server for protein–protein docking
Authors: Dima Kozakov, David R. Hall, Bing Xia, Kathryn A. Porter, Dzmitry Padhorny, Christine Yueh, Dmitri Beglov, Sándor Vajda - Nature Protocols 2017 cited by 3,346
- Performance and Its Limits in Rigid Body Protein-Protein Docking
Authors: Israel Desta, Kathryn A. Porter, Bing Xia, Dima Kozakov, Sándor Vajda - Structure 2020 cited by 729
- New additions to the ClusPro server motivated by CAPRI
Authors: Sándor Vajda, Christine Yueh, Dmitri Beglov, Tanggis Bohnuud, Scott E. Mottarella, Bing Xia, David R. Hall, Dima Kozakov - Proteins Structure Function and Bioinformatics 2016 cited by 631
- The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins
Authors: Dima Kozakov, Laurie E. Grove, David R. Hall, Tanggis Bohnuud, Scott E. Mottarella, Lingqi Luo, Bing Xia, Dmitri Beglov, Sándor Vajda - Nature Protocols 2015 cited by 673
- How good is automated protein docking?
Authors: Dima Kozakov, Dmitri Beglov, Tanggis Bohnuud, Scott E. Mottarella, Bing Xia, David Hall, Sándor Vajda - Proteins Structure Function and Bioinformatics 2013 cited by 796
- Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
Authors: Marc F. Lensink, Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato, Charlotte van Noort, João M. C. Teixeira, Alexandre M. J. J. Bonvin, Ren Kong, Hang Shi, Xufeng Lu, Shan Chang, Jian Liu, Zhiye Guo, Xiao Chen, Alex Morehead, Raj S. Roy, Tianqi Wu, Nabin Giri, Farhan Quadir, Chen Chen, Jianlin Cheng, Carlos A. Del Carpio, Eichiro Ichiishi, Luis Angel Rodríguez‐Lumbreras, Juan Fernández‐Recio, Ameya Harmalkar, Lee‐Shin Chu, Samuel W. Canner, Rituparna Smanta, Jeffrey J. Gray, Hao Li, Peicong Lin, Jiahua He, Huanyu Tao, Sheng‐You Huang, Jorge Roel‐Touris, Brian Jiménez‐García, Charles Christoffer, Anika Jain, Yuki Kagaya, Harini Kannan, Tsukasa Nakamura, Genki Terashi, Jacob Verburgt, Yuanyuan Zhang, Zicong Zhang, Hayato Fujuta, Masakazu Sekijima, Daisuke Kihara, Omeir Khan, Sergei Kotelnikov, Usman Ghani, Dzmitry Padhorny, Dmitri Beglov, Sándor Vajda, Dima Kozakov, Surendra S. Negi, Tiziana Ricciardelli, Didier Barradas‐Bautista, Zhen Cao, Mohit Chawla, Luigi Cavallo, Romina Oliva, Rui Yin, Melyssa Cheung, Johnathan D. Guest, Jessica Lee, Brian G. Pierce, Ben Shor, Tomer Cohen, Matan Halfon, Dina Schneidman‐Duhovny, Shaowen Zhu, Rujie Yin, Yuanfei Sun, Yang Shen, Martyna Maszota‐Zieleniak, Krzysztof K. Bojarski, Emilia A. Lubecka, Mateusz Marcisz, Annemarie Danielsson, Łukasz Dziadek, Margrethe Gaardløs, Artur Giełdoń, Adam Liwo, Sergey A. Samsonov, Rafał Ślusarz, Karolina Zięba, Adam K. Sieradzan, Cezary Czaplewski, Shinpei Kobayashi, Yuta Miyakawa, Yasuomi Kiyota, Mayuko Takeda‐Shitaka, Kliment Olechnovič, Lukas Valančauskas, Justas Dapkūnas, Česlovas Venclovas and 13 more - Proteins Structure Function and Bioinformatics 2023 cited by 81
- FTSite: high accuracy detection of ligand binding sites on unbound protein structures
Authors: Chi-Ho Ngan, David R. Hall, Brandon S. Zerbe, Laurie E. Grove, Dima Kozakov, Sandor Vajda - Bioinformatics, Bioinform. 2011 cited by 303
- PIPER: An FFT‐based protein docking program with pairwise potentials
Authors: Dima Kozakov, Ryan Brenke, Stephen R. Comeau, Sándor Vajda - Proteins Structure Function and Bioinformatics 2006 cited by 879
- Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs
Authors: Adrian Whitty, Mengqi Zhong, Lauren A. Viarengo‐Baker, Dmitri Beglov, David Hall, Sándor Vajda - Drug Discovery Today 2016 cited by 275
- CAPRI: A Critical Assessment of PRedicted Interactions
Authors: Joël Janin, Kim Henrick, John Moult, Lynn Ten Eyck, Michael J.E. Sternberg, Sándor Vajda, Ilya A. Vakser, Shoshana J. Wodak - Proteins Structure Function and Bioinformatics 2003 cited by 710
- Cryptic binding sites on proteins: definition, detection, and druggability
Authors: Sándor Vajda, Dmitri Beglov, Amanda Wakefield, Megan Egbert, Adrian Whitty - Current Opinion in Chemical Biology 2018 cited by 208
- High Accuracy Prediction of PROTAC Complex Structures
Authors: Mikhail Ignatov, Akhil Jindal, Sergei Kotelnikov, Dmitri Beglov, Ganna Posternak, Xiaojing Tang, Pierre Maisonneuve, Gennady Poda, Robert A. Batey, Frank Sicheri, Adrian Whitty, Peter J. Tonge, Sándor Vajda, Dima Kozakov - Journal of the American Chemical Society 2023 cited by 54
- Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
Authors: Marc F. Lensink, Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil, Tereza Clarence, Paul A. Bates, Ren Kong, Bin Liu, Guangbo Yang, Ming Liu, Hang Shi, Xufeng Lu, Shan Chang, Raj S. Roy, Farhan Quadir, Jian Liu, Jianlin Cheng, Anna Antoniak, Cezary Czaplewski, Artur Giełdoń, Mateusz Kogut, Agnieszka G. Lipska, Adam Liwo, Emilia A. Lubecka, Martyna Maszota‐Zieleniak, Adam K. Sieradzan, Rafał Ślusarz, Patryk A. Wesołowski, Karolina Zięba, Carlos Adriel Del Carpio Munoz, Eiichiro Ichiishi, Ameya Harmalkar, Jeffrey J. Gray, Alexandre M. J. J. Bonvin, Francesco Ambrosetti, Rodrigo V. Honorato, Zuzana Jandová, Brian Jiménez‐García, Panagiotis I. Koukos, Siri van Keulen, Charlotte W. van Noort, Manon Réau, Jorge Roel‐Touris, Sergei Kotelnikov, Dzmitry Padhorny, Kathryn A. Porter, Andrey Alekseenko, Mikhail Ignatov, Israel Desta, Ryota Ashizawa, Zhuyezi Sun, Usman Ghani, Nasser Hashemi, Sándor Vajda, Dima Kozakov, Mireia Rosell, Luis Angel Rodríguez‐Lumbreras, Juan Fernández‐Recio, Agnieszka Karczyńska, Sergei Grudinin, Yumeng Yan, Hao Li, Peicong Lin, Sheng‐You Huang, Charles Christoffer, Genki Terashi, Jacob Verburgt, Daipayan Sarkar, Tunde Aderinwale, Xiao Wang, Daisuke Kihara, Tsukasa Nakamura, Yuya Hanazono, Ragul Gowthaman, Johnathan D. Guest, Rui Yin, Ghazaleh Taherzadeh, Brian G. Pierce, Didier Barradas‐Bautista, Zhen Cao, Luigi Cavallo, Romina Oliva, Yuanfei Sun, Shaowen Zhu, Yang Shen, Taeyong Park, Hyeonuk Woo, Jinsol Yang, Sohee Kwon, Jonghun Won, Chaok Seok, Yasuomi Kiyota, Shinpei Kobayashi, Yoshiki Harada, Mayuko Takeda‐Shitaka, Petras J. Kundrotas, Amar Singh, Ilya A. Vakser and 9 more - Proteins Structure Function and Bioinformatics 2021 cited by 127
- Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes
Authors: Shoshana J. Wodak, Sándor Vajda, Marc F. Lensink, Dima Kozakov, Paul A. Bates - Annual Review of Biophysics 2023 cited by 67
- Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques
Authors: Ryan Brenke, Dima Kozakov, Gwo-Yu Chuang, Dmitri Beglov, David R. Hall, Melissa R. Landon, Carla Mattos, Sandor Vajda - Bioinformatics, Bioinform. 2009 cited by 457
- Application of asymmetric statistical potentials to antibody-protein docking
Authors: Ryan Brenke, David R. Hall, Gwo-Yu Chuang, Stephen R. Comeau, Tanggis Bohnuud, Dmitri Beglov, Ora Schueler-Furman, Sandor Vajda, Dima Kozakov - Bioinformatics, Bioinform. 2012 cited by 210
- Why Some Targets Benefit from beyond Rule of Five Drugs
Authors: Megan Egbert, Adrian Whitty, György M. Keserű, Sándor Vajda - Journal of Medicinal Chemistry 2019 cited by 116
- Exploring the structural origins of cryptic sites on proteins
Authors: Dmitri Beglov, David Hall, Amanda Wakefield, Lingqi Luo, Karen N. Allen, Dima Kozakov, Adrian Whitty, Sándor Vajda - National Academy of Sciences, Proceedings of the National Academy of Sciences 2018 cited by 144
- How proteins bind macrocycles
Authors: Elizabeth A. Villar, Dmitri Beglov, Spandan Chennamadhavuni, John A. Porco, Dima Kozakov, Sándor Vajda, Adrian Whitty - Nature Chemical Biology 2014 cited by 403
- Improved Docking of Protein Models by a Combination of Alphafold2 and ClusPro
Authors: Usman Ghani, Israel Desta, Akhil Jindal, Omeir Khan, George Jones, Nasser Hashemi, Sergey Kotelnikov, Dzmitry Padhorny, Sándor Vajda, Dima Kozakov - 2021 cited by 74
- Mapping the binding sites of challenging drug targets
Authors: Amanda Wakefield, Dima Kozakov, Sándor Vajda - Current Opinion in Structural Biology 2022 cited by 38
- Exploring protein hotspots by optimized fragment pharmacophores
Authors: Dávid Bajusz, Warren S. Wade, Grzegorz Satała, Andrzej J. Bojarski, Janez Ilaš, Jessica Ebner, Florian Grebien, Henrietta Papp, Ferenc Jakab, A. Douangamath, D. Fearon, F. von Delft, M. Schuller, Ivan Ahel, Amanda Wakefield, Sándor Vajda, János Gerencsér, Peter V. Pallai, György M. Keserű - Nature Communications 2021 cited by 58
- Amidino-Rocaglates: A Potent Class of eIF4A Inhibitors
Authors: Jennifer Chu, Wenhan Zhang, Regina Cencic, William G. Devine, Dmitri Beglov, Thomas Henkel, Lauren E. Brown, Sándor Vajda, John A. Porco, Jerry Pelletier - Cell chemical biology 2019 cited by 79
- Kinase Atlas: Druggability Analysis of Potential Allosteric Sites in Kinases
Authors: Christine Yueh, Justin Rettenmaier, Bing Xia, David R. Hall, Andrey Alekseenko, Kathryn A. Porter, Krister J. Barkovich, György M. Keserű, Adrian Whitty, James A. Wells, Sándor Vajda, Dima Kozakov - Journal of Medicinal Chemistry 2019 cited by 72
