Stephen A. Smith
Active 1974–2025
- 152
- Papers
- 36,193
- Citations
- 96
- h-index
- 145
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology32.8%
- Agricultural and Biological Sciences20.5%
- Medicine19.8%
- Environmental Science7%
- Earth and Planetary Sciences6.1%
- Business, Management and Accounting4.3%
- Other9.5%
Topics
- Genomics and Phylogenetic Studies6%
- Genetic diversity and population structure4.8%
- Plant Diversity and Evolution3.5%
- Plant and animal studies3.2%
- Adipose Tissue and Metabolism2.7%
- Plant and Fungal Species Descriptions2.4%
- Other77.4%
Coauthors
- Pamela S. Soltis15
- Joseph F. Walker12
- Joseph W. Brown12
- Michael J. Moore12
- Samuel F. Brockington12
- Ya Yang12
- Michael J. Donoghue8
- David D. Kuhn7
- Julie C. Holder7
- Carolyn A. Lister6
- Cody E. Hinchliff6
- John C. Clapham6
- Narendra Agrawal6
- Casey W. Dunn5
- Gary B.T. Moore5
- Alfonso Timoneda4
- Ann M. Stevens4
- Barrie C. C. Cantello4
- Christopher W. Dick4
- Colin H. Macphee4
- Daniel L. Rabosky4
- David Haigh4
- Douglas E. Soltis4
- Drew A. Larson4
All papers
- treePL: divergence time estimation using penalized likelihood for large phylogenies
Authors: Stephen A. Smith, Brian C. O'Meara - Bioinformatics, Bioinform. 2012 cited by 884
- Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
Authors: Stephen A. Smith, Michael J. Moore, Joseph W. Brown, Ya Yang - BMC Evolutionary Biology 2015 cited by 674
- Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis
Authors: Richard H. Ree, Stephen A. Smith - Systematic Biology 2008 cited by 2,347
- Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life
Authors: James B. Pease, Joseph W. Brown, Joseph F. Walker, Cody E. Hinchliff, Stephen A. Smith - American Journal of Botany 2018 cited by 382
- So many genes, so little time: A practical approach to divergence-time estimation in the genomic era
Authors: Stephen A. Smith, Joseph W. Brown, Joseph F. Walker - PLoS ONE 2018 cited by 299
- Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
Authors: Ya Yang, Stephen A. Smith - Molecular Biology and Evolution 2014 cited by 440
- Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l
Authors: Diego F. Morales‐Briones, Gudrun Kadereit, Delphine T. Tefarikis, Michael J. Moore, Stephen A. Smith, Samuel F. Brockington, Alfonso Timoneda, Won Cheol Yim, John C. Cushman, Ya Yang - Systematic Biology 2020 cited by 278
- The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution
Authors: Joseph F. Ryan, Kevin Pang, Christine E. Schnitzler, Anh-Dao Nguyen, R. Travis Moreland, David K. Simmons, Bernard Koch, Warren R. Francis, Paul Havlak, NISC Comparative Sequencing Program, Stephen A. Smith, Nicholas H. Putnam, Steven H. D. Haddock, Casey W. Dunn, Tyra G. Wolfsberg, James C. Mullikin, Mark Q. Martindale, Andreas D. Baxevanis - Science 2013 cited by 700
- Constructing a broadly inclusive seed plant phylogeny
Authors: Stephen A. Smith, Joseph W. Brown - American Journal of Botany 2018 cited by 1,107
- Synthesis of phylogeny and taxonomy into a comprehensive tree of life
Authors: Cody E. Hinchliff, Stephen A. Smith, James F. Allman, J. Gordon Burleigh, Ruchi Chaudhary, Lyndon M. Coghill, Keith A. Crandall, Jiabin Deng, Bryan T. Drew, Romina Gazis, Karl Gude, David S. Hibbett, Laura A. Katz, Haywood Dail Laughinghouse, Emily Jane McTavish, Peter Midford, Christopher L. Owen, Richard H. Ree, Jonathan Rees, Pamela S. Soltis, Tiffani L. Williams, Karen Cranston - National Academy of Sciences, Proceedings of the National Academy of Sciences 2015 cited by 816
- Broad phylogenomic sampling improves resolution of the animal tree of life
Authors: Casey W. Dunn, Andreas Hejnol, David Q. Matus, Kevin Pang, William E. Browne, Stephen A. Smith, Elaine C. Seaver, Greg W. Rouse, Matthias Obst, Gregory D. Edgecombe, Martin V. Sørensen, Steven H. D. Haddock, Andreas Schmidt‐Rhaesa, Akiko Okusu, Reinhardt Møbjerg Kristensen, Ward C. Wheeler, Mark Q. Martindale, Gonzalo Giribet - Nature 2008 cited by 1,978
- Phyx: phylogenetic tools for unix
Authors: Joseph W. Brown, Joseph F. Walker, Stephen A. Smith - Bioinformatics, Bioinform. 2017 cited by 352
- Three keys to the radiation of angiosperms into freezing environments
Authors: Amy E. Zanne, David C. Tank, William K. Cornwell, Jonathan M. Eastman, Stephen A. Smith, Richard G. FitzJohn, Daniel J. McGlinn, Brian C. O’Meara, Angela T. Moles, Peter B. Reich, Dana L. Royer, Pamela S. Soltis, Peter F. Stevens, Mark Westoby, Ian J. Wright, Lonnie W. Aarssen, Robert I. Bertin, Andre Calaminus, Rafaël Govaerts, Frank A. Hemmings, Michelle R. Leishman, Jacek Oleksyn, Pamela S. Soltis, Nathan G. Swenson, Laura Warman, Jeremy M. Beaulieu - Nature 2013 cited by 1,744
- Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements
Authors: Samuel H. Lewis, Kaycee A. Quarles, Yujing Yang, M. Tanguy, Lise Frézal, Stephen A. Smith, Prashant P. Sharma, Richard Cordaux, Clément Gilbert, Isabelle Giraud, David H. Collins, Phillip D. Zamore, Eric A. Miska, Peter Sarkies, Francis M. Jiggins - Nature Ecology & Evolution 2017 cited by 320
- Evolutionary history of the angiosperm flora of China
Authors: Limin Lu, Ling‐Feng Mao, Tuo Yang, Jian-Fei Ye, Bing Liu, Honglei Li, Miao Sun, Joseph T. Miller, Sarah Mathews, Hai-Hua Hu, Yan‐Ting Niu, Dan-Xiao Peng, You-Hua Chen, Stephen A. Smith, Min Chen, Kun‐Li Xiang, Chi Toan Le, Viet-Cuong Dang, An-Ming Lu, Pamela S. Soltis, Pamela S. Soltis, Jianhua Li, Zhiduan Chen - Nature 2018 cited by 519
- Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation
Authors: Daniel L. Rabosky, Francesco Santini, Jonathan M. Eastman, Stephen A. Smith, Brian L. Sidlauskas, Jonathan Chang, Michael E. Alfaro - Nature Communications 2013 cited by 692
- 10KP: A phylodiverse genome sequencing plan
Authors: Shifeng Cheng, Michael Melkonian, Stephen A. Smith, Samuel F. Brockington, John M. Archibald, Pierre‐Marc Delaux, Fay‐Wei Li, Barbara Melkonian, Evgeny V. Mavrodiev, Wenjing Sun, Yuan Fu, Huanming Yang, Pamela S. Soltis, Sean W. Graham, Pamela S. Soltis, Xin Liu, Xun Xu, Gane Ka‐Shu Wong - GigaScience 2018 cited by 258
- Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
Authors: Gregory W. Stull, Xiao‐Jian Qu, Caroline Parins‐Fukuchi, Yingying Yang, Jun-Bo Yang, Zhi-Yun Yang, Yi Hu, Hong Mā, Pamela S. Soltis, Douglas E. Soltis, Li D, Stephen A. Smith, Ting‐Shuang Yi - Nature Plants 2021 cited by 178
- Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships among major lineages
Authors: Gregory W. Stull, Pamela S. Soltis, Pamela S. Soltis, Matthew A. Gitzendanner, Stephen A. Smith - American Journal of Botany 2020 cited by 141
- Chloranthus genome provides insights into the early diversification of angiosperms
Authors: Xing Guo, Dongming Fang, Sunil Kumar Sahu, Shuai Yang, Xuanmin Guang, Ryan A. Folk, Stephen A. Smith, André S. Chanderbali, Sisi Chen, Min Liu, Ting Yang, Shouzhou Zhang, Xin Liu, Xun Xu, Pamela S. Soltis, Douglas E. Soltis, Huan Liu - Nature Communications 2021 cited by 125
- The Origins of C 4 Grasslands: Integrating Evolutionary and Ecosystem Science
Authors: Erika J. Edwards, Colin P. Osborne, Caroline A. E. Strömberg, Stephen A. Smith, William J. Bond, Pascal‐Antoine Christin, Asaph B. Cousins, Melvin R. Duvall, David L. Fox, Robert P. Freckleton, Oula Ghannoum, James Hartwell, Yongsong Huang, Christine M. Janis, Jon E. Keeley, Elizabeth A. Kellogg, Alan K. Knapp, Andrew D. B. Leakey, David M. Nelson, Jeffery M. Saarela, Rowan F. Sage, Osvaldo E. Sala, Nicolas Salamin, Christopher J. Still, Brett J. Tipple - Science 2010 cited by 1,084
- Resistin is expressed in human macrophages and directly regulated by PPARγ activators
Authors: Lisa Patel, Amy C Buckels, Ian J. Kinghorn, Paul R. Murdock, Joanna D. Holbrook, Christopher Plumpton, Colin H. Macphee, Stephen A. Smith - Biochemical and Biophysical Research Communications 2003 cited by 916
- Species Selection Maintains Self-Incompatibility
Authors: Emma E. Goldberg, Joshua R. Kohn, Russell Lande, Kelly A. Robertson, Stephen A. Smith, Boris Igić - Science 2010 cited by 542
- The bien r package: A tool to access the Botanical Information and Ecology Network (BIEN) database
Authors: Brian Maitner, Brad Boyle, Nathan Casler, Rick Condit, John C. Donoghue, Sandra M. Durán, Daniel Guaderrama, Cody E. Hinchliff, Peter M. Jørgensen, Nathan J. B. Kraft, Brian J. McGill, Cory Merow, Naia Morueta‐Holme, Robert K. Peet, Brody Sandel, Mark Schildhauer, Stephen A. Smith, Jens‐Christian Svenning, Barbara M. Thiers, Cyrille Violle, Susan K. Wiser, Brian J. Enquist - Methods in Ecology and Evolution 2017 cited by 411
