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Timothy J. Johnson

Active 2001–2025

103
Papers
24,335
Citations
64
h-index
103
i10-index

Citations

Citations per year for Timothy J. Johnson1994: 1 citations2000: 2 citations2002: 4 citations2003: 9 citations2004: 12 citations2005: 30 citations2006: 39 citations2007: 66 citations2008: 99 citations2009: 93 citations2010: 111 citations2011: 117 citations2012: 115 citations2013: 164 citations2014: 126 citations2015: 129 citations2016: 122 citations2017: 168 citations2018: 208 citations2019: 639 citations2020: 756 citations2021: 723 citations2022: 572 citations2023: 329 citations2024: 478 citations2025: 230 citations2026: 7 citations1995–1999: no citations, so these years are not shown2001: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 1,515 citing papers, 23.6% of this breakdownChina: 695 citing papers, 10.8% of this breakdownUnited Kingdom: 459 citing papers, 7.1% of this breakdownGermany: 291 citing papers, 4.5% of this breakdownFrance: 265 citing papers, 4.1% of this breakdownCanada: 255 citing papers, 4% of this breakdownAustralia: 233 citing papers, 3.6% of this breakdownSpain: 162 citing papers, 2.5% of this breakdownItaly: 158 citing papers, 2.5% of this breakdownJapan: 132 citing papers, 2.1% of this breakdownNetherlands: 121 citing papers, 1.9% of this breakdownBrazil: 112 citing papers, 1.7% of this breakdown
0%23.6%Other 31.6%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology47%
  • Agricultural and Biological Sciences15.3%
  • Environmental Science8%
  • Medicine7.7%
  • Engineering5.7%
  • Chemistry4.5%
  • Other11.8%

Topics

  • Antibiotic Resistance in Bacteria9.1%
  • Gut microbiota and health8.3%
  • Escherichia coli research studies5.8%
  • Salmonella and Campylobacter epidemiology5.1%
  • Animal Nutrition and Physiology3%
  • Pharmaceutical and Antibiotic Environmental Impacts2.9%
  • Other65.8%

Coauthors

All papers

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  1. Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

    Authors: Daryl M. Gohl, Pajau Vangay, John Garbe, Allison Maclean, Adam Hauge, Aaron Becker, Trevor J. Gould, Jonathan B. Clayton, Timothy J. Johnson, Ryan C. Hunter, Dan Knights, Kenneth B. Beckman - Nature Biotechnology 2016 cited by 865

  2. The HITRAN2016 molecular spectroscopic database

    Authors: Iouli E. Gordon, Laurence S. Rothman, C. Hill, Roman V. Kochanov, Yan Tan, P. F. Bernath, Manfred Birk, Vincent Boudon, A. Campargue, K. Chance, Brian J. Drouin, J.‐M. Flaud, Robert R. Gamache, Joseph T. Hodges, D. Jacquemart, V. I. Perevalov, A. Perrin, Keith P. Shine, Mary Ann H. Smith, Jonathan Tennyson, Geoffrey C. Toon, H. Tran, Vladimir G. Tyuterev, A. Barbé, Attila G. Császár, V. Malathy Devi, Tibor Furtenbacher, Jeremy J. Harrison, J.‐M. Hartmann, A. Jolly, Timothy J. Johnson, Tijs Karman, Isabelle Kleiner, Aleksandra A. Kyuberis, Joep Loos, O.M. Lyulin, S. T. Massie, С.Н. Михайленко, N. Moazzen-Ahmadi, H. S. P. Müller, O. V. Naumenko, A.V. Nikitin, O. L. Polyansky, M. Rey, M. Rotger, Steven W. Sharpe, Keeyoon Sung, E. Starikova, S.A. Tashkun, J. Vander Auwera, Georg Wagner, Jonas Wilzewski, Piotr Wcisło, Shanshan Yu, E. J. Zak - Journal of Quantitative Spectroscopy and Radiative Transfer 2017 cited by 7,944

  3. The chicken gastrointestinal microbiome

    Authors: Brian B. Oakley, Hyun S. Lillehoj, Michael H. Kogut, Woo Kyun Kim, John J. Maurer, Adriana Ayres Pedroso, Margie D. Lee, Stephen Collett, Timothy J. Johnson, N.A. Cox - FEMS Microbiology Letters 2014 cited by 793

  4. Opioid-induced gut microbial disruption and bile dysregulation leads to gut barrier compromise and sustained systemic inflammation

    Authors: Santanu Banerjee, Gregory M. Sindberg, Fuyuan Wang, Jingjing Meng, Ujjawal Sharma, Li Zhang, Patricia Dauer, Chi Chen, Joseph J. Dalluge, Timothy J. Johnson, Sabita Roy - Mucosal Immunology 2016 cited by 268

  5. Morphine induces changes in the gut microbiome and metabolome in a morphine dependence model

    Authors: Fuyuan Wang, Jingjing Meng, Li Zhang, Timothy J. Johnson, Chi Chen, Sabita Roy - Scientific Reports 2018 cited by 240

  6. Identification of Minimal Predictors of Avian Pathogenic Escherichia coli Virulence for Use as a Rapid Diagnostic Tool

    Authors: Timothy J. Johnson, Yvonne Wannemuehler, Curt Doetkott, Sara J. Johnson, Sandra C. Rosenberger, Lisa K. Nolan - Journal of Clinical Microbiology 2008 cited by 462

  7. Pathogenomics of the Virulence Plasmids ofEscherichia coli

    Authors: Timothy J. Johnson, Lisa K. Nolan - Microbiology and Molecular Biology Reviews 2009 cited by 454

  8. Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131

    Authors: Nicole Stoesser, Anna E. Sheppard, Louise Pankhurst, Nicola De Maio, Catrin E. Moore, Robert Sebra, Paul Turner, Luke Anson, Andrew Kasarskis, Elizabeth M. Batty, Veronica N. Kos, Daniel J. Wilson, Rattanaphone Phetsouvanh, David Wyllie, Evgeni V. Sokurenko, Amee R. Manges, Timothy J. Johnson, Lance B. Price, Tim Peto, James R. Johnson, Xavier Didelot, A. Sarah Walker, Derrick W. Crook - mBio 2016 cited by 352

  9. Captivity humanizes the primate microbiome

    Authors: Jonathan B. Clayton, Pajau Vangay, Hu Huang, Tonya Ward, Benjamin Hillmann, Gabriel A. Al‐Ghalith, Dominic A. Travis, Ha Thang Long, Bui Van Tuan, Vo Van Minh, Francis Cabana, Tilo Nadler, Barbara Toddes, Tami Murphy, Kenneth E. Glander, Timothy J. Johnson, Dan Knights - National Academy of Sciences, Proceedings of the National Academy of Sciences 2016 cited by 520

  10. Piglet gut microbial shifts early in life: causes and effects

    Authors: Robin B. Guevarra, Jun Hyung Lee, Sun Hee Lee, Min-Jae Seok, Doo Wan Kim, Bit Na Kang, Timothy J. Johnson, Richard E. Isaacson, Hyeun Bum Kim - Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology 2019 cited by 411

  11. Escherichia coli ST131- H 22 as a Foodborne Uropathogen

    Authors: Cindy M. Liu, Marc Stegger, Maliha Aziz, Timothy J. Johnson, Kara Waits, Lora Nordstrom, Lori Gauld, Brett Weaver, Diana Rolland, Sally Statham, Joseph Horwinski, Sanjeev Sariya, Gregg S. Davis, Evgeni V. Sokurenko, Paul Keim, James R. Johnson, Lance B. Price - mBio 2018 cited by 240

  12. Salmonella Pathogenicity and Host Adaptation in Chicken-Associated Serovars

    Authors: Steven L. Foley, Timothy J. Johnson, Steven C. Ricke, Rajesh Nayak, Jessica L. Danzeisen - Microbiology and Molecular Biology Reviews 2013 cited by 325

  13. Using source-associated mobile genetic elements to identify zoonotic extraintestinal E. coli infections

    Authors: Cindy M. Liu, Maliha Aziz, Daniel E. Park, Zhenke Wu, Marc Stegger, Mengbing Li, Yashan Wang, Kara Schmidlin, Timothy J. Johnson, Benjamin J. Koch, Bruce A. Hungate, Lora Nordstrom, Lori Gauld, Brett Weaver, Diana Rolland, Sally Statham, Brantley Hall, Sanjeev Sariya, Gregg S. Davis, Paul Keim, James R. Johnson, Lance B. Price - One Health 2023 cited by 54

  14. Environmental Spread of Extended Spectrum Beta-Lactamase (ESBL) Producing Escherichia coli and ESBL Genes among Children and Domestic Animals in Ecuador

    Authors: Liseth Salinas, Fernanda Loayza, Paúl Cárdenas, Carlos Saraiva-Garcia, Timothy J. Johnson, Heather K. Amato, Jay P. Graham, Gabriel Trueba - Environmental Health Perspectives 2021 cited by 75

  15. DNA Sequence of a ColV Plasmid and Prevalence of Selected Plasmid-Encoded Virulence Genes among Avian Escherichia coli Strains

    Authors: Timothy J. Johnson, Kylie E. Siek, Sara J. Johnson, Lisa K. Nolan - Journal of Bacteriology 2005 cited by 329

  16. Separate F-Type Plasmids Have Shaped the Evolution of the H 30 Subclone of Escherichia coli Sequence Type 131

    Authors: Timothy J. Johnson, Jessica L. Danzeisen, Bonnie P. Youmans, Kyle A. Case, Katharine Llop, Jeannette Muñoz-Aguayo, Cristian Flores-Figueroa, Maliha Aziz, Nicole Stoesser, Evgeni V. Sokurenko, Lance B. Price, James R. Johnson - mSphere 2016 cited by 116

  17. Segmented Filamentous Bacteria – Metabolism Meets Immunity

    Authors: Grant Hedblom, Holly A. Reiland, Matthew J. Sylte, Timothy J. Johnson, David J. Baumler - Frontiers in Microbiology 2018 cited by 127

  18. Population Dynamics of Salmonella enterica Serotypes in Commercial Egg and Poultry Production

    Authors: Steven L. Foley, Rajesh Nayak, Irene Hanning, Timothy J. Johnson, Jing Han, Steven C. Ricke - Applied and Environmental Microbiology 2011 cited by 470

  19. Impact of early human milk on sepsis and health-care costs in very low birth weight infants

    Authors: Aloka L. Patel, Timothy J. Johnson, Janet L. Engstrom, Louis Fogg, Briana J. Jegier, Harold R. Bigger, P P Meier - Journal of Perinatology 2013 cited by 301

  20. Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilers

    Authors: Mariya Azam, Mashkoor Mohsin, Timothy J. Johnson, Emily Smith, Abigail Johnson, Muhammad Umair, Muhammad Kashif Saleemi, Sajjad-ur-Rahman - Veterinary Microbiology 2020 cited by 66

  21. Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis

    Authors: Kylie E. Rodriguez-Siek, Catherine W. Giddings, Curt Doetkott, Timothy J. Johnson, Mohamed K. Fakhr, Lisa K. Nolan - Microbiology 2005 cited by 427

  22. Plasmid Replicon Typing of Commensal and Pathogenic Escherichia coli Isolates

    Authors: Timothy J. Johnson, Yvonne Wannemuehler, Sara J. Johnson, Catherine M. Logue, David G. White, Curt Doetkott, Lisa K. Nolan - Applied and Environmental Microbiology 2007 cited by 329

  23. Prevalence, antibiotic resistance, virulence and genetic diversity of Staphylococcus aureus isolated from bulk tank milk samples of U.S. dairy herds

    Authors: Kruthika Patel, S. Godden, E. Royster, B.A. Crooker, Timothy J. Johnson, Emily Smith, Srinand Sreevatsan - BMC Genomics 2021 cited by 68

  24. Refining the definition of the avian pathogenic Escherichia coli (APEC) pathotype through inclusion of high-risk clonal groups

    Authors: Timothy J. Johnson, Elizabeth A. Miller, Cristian Flores-Figueroa, Jeannette Muñoz-Aguayo, Carol J. Cardona, Katie Fransen, Megan E. Lighty, Eric Gonder, Jill Nezworski, Adam Haag, Michelle Behl, Michelle Kromm, B. W. Wileman, Marissa Studniski, Randall S. Singer - Poultry Science 2022 cited by 51