Yidong Chen
Active 1976–2026
- Also published as
- YiDong Chen
- 384
- Papers
- 30,166
- Citations
- 84
- h-index
- 202
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology50.3%
- Medicine30.3%
- Computer Science9.1%
- Neuroscience2.4%
- Immunology and Microbiology2.4%
- Engineering1.4%
- Other4.1%
Topics
- Gene expression and cancer classification4.8%
- RNA modifications and cancer3.4%
- Prostate Cancer Treatment and Research3.2%
- Bioinformatics and Genomic Networks3%
- Cancer-related molecular mechanisms research2.5%
- Cancer-related gene regulation1.8%
- Other81.3%
Coauthors
- Xiaodong Shi78
- Yufei Huang55
- Yu-Chiao Chiu30
- Paul S. Meltzer28
- Edward R. Dougherty26
- Jinsong Su26
- Biao Fu21
- Hung-I Harry Chen20
- Jeffrey M. Trent19
- Michael Bittner18
- Tzu-Hung Hsiao18
- Zhao Lai18
- Jia Meng17
- Manjeet K. Rao17
- Liang Zhang14
- Hui Liu11
- Changle Zhou10
- Eric Y. Chuang10
- Jie Qiao10
- Li-Ju Wang10
- Zhehuang Huang10
- Guorong Cai9
- Junrong Li9
- Liangru Zhu9
All papers
- AR-V7 and Resistance to Enzalutamide and Abiraterone in Prostate Cancer
Authors: Emmanuel S. Antonarakis, Changxue Lu, Hao Wang, Brandon Luber, Mari Nakazawa, Jeffrey C. Roeser, Yan Chen, Tabrez A. Mohammad, Yidong Chen, Helen Fedor, Tamara L. Lotan, Qizhi Zheng, Angelo M. De Marzo, John T. Isaacs, William B. Isaacs, Rosa Nadal, Channing J. Paller, Samuel R. Denmeade, Michael A. Carducci, Mario A. Eisenberger, Jun Luo - New England Journal of Medicine 2014 cited by 2,687
- Meningeal lymphatic vessels regulate brain tumor drainage and immunity
Authors: Xueting Hu, Qiuping Deng, Lu Ma, Qingqing Li, Yidong Chen, Yuhan Liao, Fan Zhou, Chen Zhang, Linlin Shao, Jun Feng, Tubao He, Weihai Ning, Yan Kong, Yingqing Huo, Aibin He, Bing Liu, Jingjing Zhang, Ralf H. Adams, Yulong He, Fuchou Tang, Xiu‐Wu Bian, Jincai Luo - Cell Research 2020 cited by 379
- Phase II Investigation of TVB-2640 (Denifanstat) with Bevacizumab in Patients with First Relapse High-Grade Astrocytoma
Authors: William Kelly, Adolfo Enrique Diaz Duque, Joel Michalek, Brandon Konkel, Laura Caflisch, Yidong Chen, Sarath Chand Pathuri, Vinu Madhusudanannair-Kunnuparampil, John Floyd, Andrew Brenner - Clinical Cancer Research 2023 cited by 117
- A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package
Authors: Jia Meng, Zhi-Liang Lu, Hui Liu, Lin Zhang, Shao‐Wu Zhang, Yidong Chen, Manjeet K. Rao, Yufei Huang - Methods 2014 cited by 390
- Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis
Authors: Mei Wang, Xixi Liu, Gang Chang, Yidong Chen, Geng An, Liying Yan, Shuai Gao, Yanwen Xu, Yueli Cui, Ji Dong, Yuhan Chen, Xiaoying Fan, Yuqiong Hu, Ke Song, Xiaohui Zhu, Yun Gao, Zhaokai Yao, Shuhui Bian, Yu Hou, Jiahao Lu, Rui Wang, Yong Fan, Ying Lian, Wenhao Tang, Yapeng Wang, Jianqiao Liu, Lianming Zhao, Luyu Wang, Zhaoting Liu, Ren-Pei Yuan, Yujia Shi, Boqiang Hu, Xiulian Ren, Fuchou Tang, Xiaoyang Zhao, Jie Qiao - Cell stem cell 2018 cited by 508
- Generative Adversarial Networks and Its Applications in Biomedical Informatics
Authors: Lan Lan, Lei You, Zeyang Zhang, Zhiwei Fan, Weiling Zhao, Nianyin Zeng, Yidong Chen, Xiaobo Zhou - Frontiers in Public Health 2020 cited by 237
- Classification of Cancer Types Using Graph Convolutional Neural Networks
Authors: Ricardo J. Ramirez, Yu‐Chiao Chiu, Allen Hererra, Milad Mostavi, Joshua Ramirez, Yidong Chen, Yufei Huang, Yu-Fang Jin - Frontiers in Physics 2020 cited by 139
- Cross-talk among writers, readers, and erasers of m 6 A regulates cancer growth and progression
Authors: Panneerdoss Subbarayalu, Vijay Kumar Eedunuri, Pooja Yadav, Santosh Timilsina, Subapriya Rajamanickam, Suryavathi Viswanadhapalli, Nourhan Abdelfattah, Benjamin Onyeagucha, Xiaodong Cui, Zhao Lai, Tabrez A. Mohammad, Yogesh K. Gupta, Tim Hui-Ming Huang, Yufei Huang, Yidong Chen, Manjeet K. Rao - Science Advances 2018 cited by 364
- EWS–FLI1 increases transcription to cause R-loops and block BRCA1 repair in Ewing sarcoma
Authors: Aparna Gorthi, July Carolina Romero, Eva Loranc, Lin Cao, Liesl A. Lawrence, Elicia Goodale, Amanda Balboni Iniguez, Xavier Bernard, V. Pragathi Masamsetti, Sydney Roston, Elizabeth R. Lawlor, Jeffrey A. Toretsky, Kimberly Stegmaier, Stephen L. Lessnick, Yidong Chen, Alexander J.R. Bishop - Nature 2018 cited by 339
- A novel significance score for gene selection and ranking
Authors: Yufei Xiao, Tzu-Hung Hsiao, Uthra Suresh, Hung-I Harry Chen, Xiaowu Wu, Steven E. Wolf, Yidong Chen - Bioinformatics, Bioinform. 2012 cited by 352
- Primary specification of blastocyst trophectoderm by scRNA-seq: New insights into embryo implantation
Authors: Dandan Liu, Yidong Chen, Yidong Chen, Yixin Ren, Peng Yuan, Nan Wang, Qiang Liu, Cen Yang, Zhiqiang Yan, Ming Yang, Jing Wang, Ying Lian, Jie Yan, Fan Zhai, Yanli Nie, Xiaohui Zhu, Yuan Chen, Yuan Chen, Rong Li, Hsun‐Ming Chang, Peter C. K. Leung, Jie Qiao, Liying Yan - Science Advances 2022 cited by 75
- M6A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression
Authors: Pooja Yadav, Panneerdoss Subbarayalu, Daisy Medina, Saif Nirzhor, Santosh Timilsina, Subapriya Rajamanickam, Vijay Kumar Eedunuri, Yogesh K. Gupta, Siyuan Zheng, Nourhan Abdelfattah, Yufei Huang, Ratna K. Vadlamudi, Robert Hromas, Paul S. Meltzer, Peter Houghton, Yidong Chen, Manjeet K. Rao - Cancer Research 2022 cited by 102
- Exome-based analysis for RNA epigenome sequencing data
Authors: Jia Meng, Xiaodong Cui, Manjeet K. Rao, Yidong Chen, Yufei Huang - Bioinformatics, Bioinform. 2013 cited by 206
- Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design
Authors: Jo Lynne Rokita, Komal S. Rathi, Maria Cardenas, Kristen Upton, Joy C. Jayaseelan, Katherine L. Cross, Jacob Pfeil, Laura E. Egolf, Gregory P. Way, Alvin Farrel, Nathan M. Kendsersky, Khushbu Patel, Krutika S. Gaonkar, Apexa Modi, Esther R. Berko, Gonzalo López, Zalman Vaksman, Chelsea Mayoh, Jonas Nance, Kristyn McCoy, Michelle Haber, Kathryn Evans, Hannah McCalmont, Katerina Bendak, Julia Böhm, Glenn M. Marshall, Vanessa Tyrrell, Karthik Kalletla, Frank Braun, Lin Qi, Yunchen Du, Huiyuan Zhang, Holly Lindsay, Sibo Zhao, Jack Shu, Patricia Baxter, Christopher L. Morton, Dias Kurmashev, Siyuan Zheng, Yidong Chen, Jay Bowen, Anthony C. Bryan, Kristen Leraas, Sara E. Coppens, HarshaVardhan Doddapaneni, Zeineen Momin, Wendong Zhang, Gregory I. Sacks, Lori S. Hart, Kateryna Krytska, Yaël P. Mossé, Gregory J. Gatto, Yolanda Sánchez, Casey S. Greene, Sharon J. Diskin, Olena M. Vaske, David Haussler, Julie M. Gastier‐Foster, E. Anders Kolb, Richard Görlick, Xiao-Nan Li, C. Patrick Reynolds, Raushan T. Kurmasheva, Peter J. Houghton, Malcolm A. Smith, Richard B. Lock, Pichai Raman, David A. Wheeler, John M. Maris - Cell Reports 2019 cited by 173
- Predicting and characterizing a cancer dependency map of tumors with deep learning
Authors: Yu‐Chiao Chiu, Siyuan Zheng, Li‐Ju Wang, Brian S. Iskra, Manjeet K. Rao, Peter J. Houghton, Yufei Huang, Yidong Chen - Science Advances 2021 cited by 87
- Signature-scoring methods developed for bulk samples are not adequate for cancer single-cell RNA sequencing data
Authors: Nighat Noureen, Zhenqing Ye, Yidong Chen, Xiaojing Wang, Siyuan Zheng - eLife 2022 cited by 63
- Knowledge Graph Embedding Based on Multi-View Clustering Framework
Authors: Han Xiao, Yidong Chen, Xiaodong Shi - IEEE Transactions on Knowledge and Data Engineering, IEEE Trans. Knowl. Data Eng. 2019 cited by 56
- Transformer for Gene Expression Modeling (T-GEM): An Interpretable Deep Learning Model for Gene Expression-Based Phenotype Predictions
Authors: Tinghe Zhang, Md Musaddaqul Hasib, Yu‐Chiao Chiu, Zhifeng Han, Yufang Jin, Mario Flores, Yidong Chen, Yufei Huang - Cancers 2022 cited by 49
- GeoRGS: Geometric Regularization for Real-Time Novel View Synthesis From Sparse Inputs
Authors: Zhaoliang Liu, Jinhe Su, Guorong Cai, Yidong Chen, Binghui Zeng, Zongyue Wang - IEEE Transactions on Circuits and Systems for Video Technology, IEEE Trans. Circuits Syst. Video Technol. 2024 cited by 24
- EpCAM and α-Fetoprotein Expression Defines Novel Prognostic Subtypes of Hepatocellular Carcinoma
Authors: Taro Yamashita, Marshonna Forgues, Wei Wang, Jin Woo Kim, Qing‐Hai Ye, Huliang Jia, Anuradha Budhu, Krista A. Zanetti, Yidong Chen, Lun–Xiu Qin, Zhao–You Tang, Xin Wei Wang - Cancer Research 2008 cited by 715
- Mechanisms of venetoclax resistance and solutions
Authors: Jiachen Liu, Yidong Chen, Lihua Yu, Lihua Yang - Frontiers in Oncology 2022 cited by 53
- Prediction and interpretation of cancer survival using graph convolution neural networks
Authors: Ricardo J. Ramirez, Yu‐Chiao Chiu, Songyao Zhang, Joshua Ramirez, Yidong Chen, Yufei Huang, Yufang Jin - Methods 2021 cited by 62
- A Token-Level Contrastive Framework for Sign Language Translation
Authors: Biao Fu, Peigen Ye, Liang Zhang, Pei Yu, Cong Hu, Xiaodong Shi, Yidong Chen - ICASSP 2023 - 2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) 2023 cited by 21
- Prediction of venous metastases, recurrence, and prognosis in hepatocellular carcinoma based on a unique immune response signature of the liver microenvironment
Authors: Anuradha Budhu, Marshonna Forgues, Qing-Hai Ye, Hu-Liang Jia, Ping He, Krista A. Zanetti, Udai S. Kammula, Yidong Chen, Lun‐Xiu Qin, Zhao-You Tang, Xin Wei Wang - Cancer Cell 2006 cited by 860
