Arend Sidow
1992–2022 年に発表
- 57
- 論文数
- 18,124
- 被引用数
- 45
- h 指数
- 53
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology72.7%
- Medicine12.2%
- Agricultural and Biological Sciences4.8%
- Immunology and Microbiology3.2%
- Neuroscience2.3%
- Computer Science1.8%
- その他3%
トピック
- Genomics and Chromatin Dynamics7.5%
- Genomics and Phylogenetic Studies7.4%
- RNA and protein synthesis mechanisms3.8%
- Epigenetics and DNA Methylation3.8%
- Genomics and Rare Diseases3.4%
- RNA Research and Splicing3.1%
- その他71%
共著者
- Serafim Batzoglou17
- Ziming Weng10
- Gregory M. Cooper9
- Michael Brudno7
- Eric A. Stone6
- Xin Zhou6
- Robert B. West5
- Anshul Kundaje4
- Anton Valouev4
- Cheryl L. Smith4
- Daniel E. Newburger4
- David L. Goode4
- Dorna Kashef Haghighi4
- Lu Zhang4
- Avantika Lal3
- Daniele Ramazzotti3
- Eric D. Green3
- Eugene Davydov3
- Jonathan Binkley3
- Kerrin S. Small3
- Mark Gerstein3
- R Myers3
- Raheleh Salari3
- Steven Johnson3
全論文
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
著者: Stephen G. Landt, Georgi K. Marinov, Anshul Kundaje, Pouya Kheradpour, Florencia Pauli, Serafim Batzoglou, B Bernstein, Peter J. Bickel, James B. Brown, Philip Cayting, Yiwen Chen, Gilberto DeSalvo, Charles B. Epstein, Katherine Fisher-Aylor, Ghia Euskirchen, Mark Gerstein, Jason Gertz, Alexander J. Hartemink, Michael M. Hoffman, Vishwanath R. Iyer, Youngsook L. Jung, Subhradip Karmakar, Manolis Kellis, Peter V. Kharchenko, Qunhua Li, Tao Liu, X. Shirley Liu, Lijia Ma, Aleksandar Milosavljevic, R Myers, Peter J. Park, Michael J. Pazin, Marc D. Perry, Debasish Raha, Timothy E. Reddy, Joel Rozowsky, Noam Shoresh, Arend Sidow, Matthew Slattery, J Stamatoyannopoulos, Michael Tolstorukov, Kevin P. White, Simon Xi, Peggy Farnham, Jason D. Lieb, B Wold, M Snyder - Genome Research 2012 被引用: 2,223
- Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++
著者: Eugene Davydov, David L. Goode, Marina Sirota, Gregory M. Cooper, Arend Sidow, Serafim Batzoglou - PLoS Computational Biology, PLoS Comput. Biol. 2010 被引用: 1,877
- Benchmarking challenging small variants with linked and long reads
著者: Justin Wagner, Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stanković, Vladimir Kovačević, Byunggil Yoo, Neil Miller, Jeffrey Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael C. Schatz, Giuseppe Narzisi, Marta Byrska-Bishop, Wayne E. Clarke, Uday S. Evani, Charles Markello, Kishwar Shafin, Xin Zhou, Arend Sidow, Vikas Bansal, Peter Ebert, Tobias Marschall, Peter M. Lansdorp, Vincent C. T. Hanlon, Carl-Adam Mattsson, Álvaro Martínez Barrio, Ian T. Fiddes, Chunlin Xiao, Arkarachai Fungtammasan, Chen-Shan Chin, Aaron M. Wenger, William J. Rowell, Fritz J. Sedlazeck, Andrew Carroll, Marc Salit, Justin M. Zook - Cell Genomics 2022 被引用: 209
- Architecture of the human regulatory network derived from ENCODE data
著者: Mark Gerstein, Anshul Kundaje, Manoj Hariharan, Stephen G. Landt, Koon‐Kiu Yan, Chao Cheng, Xinmeng Jasmine Mu, Ekta Khurana, Joel Rozowsky, Roger P. Alexander, Renqiang Min, Pedro Alves, Alexej Abyzov, Nick Addleman, Nitin Bhardwaj, Alan P. Boyle, Philip Cayting, Alexandra Charos, David Ziyou Chen, Yong Cheng, Declan Clarke, Catharine Eastman, Ghia Euskirchen, Seth Frietze, Yao Fu, Jason Gertz, Fabian Grubert, Arif Harmanci, Preti Jain, Maya Kasowski, Phil Lacroute, Jing Leng, Jin Lian, Hannah Monahan, Henriette O’Geen, Zhengqing Ouyang, E. Christopher Partridge, Dorrelyn Patacsil, Florencia Pauli, Debasish Raha, Lucı́a Ramı́rez, Timothy E. Reddy, Brian D. Reed, Minyi Shi, Teri Slifer, Jing Wang, Linfeng Wu, Xinqiong Yang, Kevin Y. Yip, Gili Zilberman-Schapira, Serafim Batzoglou, Arend Sidow, Peggy Farnham, R Myers, Sherman M. Weissman, M Snyder - Nature 2012 被引用: 1,561
- Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival
著者: Daniele Ramazzotti, Avantika Lal, Bo Wang, Serafim Batzoglou, Arend Sidow - Nature Communications 2018 被引用: 208
- Determinants of nucleosome organization in primary human cells
著者: Anton Valouev, Steven Johnson, Scott D. Boyd, Cheryl L. Smith, Andrew Fire, Arend Sidow - Nature 2011 被引用: 726
- Distribution and intensity of constraint in mammalian genomic sequence
著者: Gregory M. Cooper, Eric A. Stone, George Asimenos, Eric D. Green, Serafim Batzoglou, Arend Sidow - Genome Research 2005 被引用: 1,444
- Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses
著者: Daniela Kenzelmann Brož, Stephano S. Mello, Kathryn T. Bieging, Dadi Jiang, Rachel L. Dusek, Colleen A. Brady, Arend Sidow, Laura D. Attardi - Genes & Development 2013 被引用: 448
- LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
著者: Michael Brudno, Chuong B. Do, Gregory M. Cooper, Michael F. Kim, Eugene Davydov, NISC Comparative Sequencing Program, Eric D. Green, Arend Sidow, Serafim Batzoglou - Genome Research 2003 被引用: 1,154
- The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
著者: Stephen B. Montgomery, David L. Goode, Erika Kvikstad, Cornelis A. Albers, Zhengdong D. Zhang, Xinmeng Jasmine Mu, Guruprasad Ananda, Bryan Howie, Konrad J. Karczewski, Kevin S. Smith, Vanessa Anaya, Rhea Richardson, Joe R. Davis, Daniel G. MacArthur, Arend Sidow, Laurent Duret, Mark Gerstein, Kateryna D. Makova, Jonathan Marchini, Gil McVean, Gerton Lunter - Genome Research 2013 被引用: 277
- Lineage-specific enhancers activate self-renewal genes in macrophages and embryonic stem cells
著者: Erinn Soucié, Ziming Weng, Laufey Geirsdóttir, Kaaweh Molawi, Julien Maurizio, Romain Fenouil, Noushin Mossadegh‐Keller, Grégory Gimenez, Laurent Vanhille, Meryam Beniazza, Jérémy Favret, Carole Berruyer-Pouyet, Pierre Perrin, Nir Hacohen, Jean‐Christophe Andrau, Pierre Ferrier, Patrice Dubreuil, Arend Sidow, Michael H. Sieweke - Science 2016 被引用: 256
- A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
著者: Anton Valouev, Jeffrey K. Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather E. Peckham, Kathy Zeng, Joel A. Malek, Gina L. Costa, Kevin McKernan, Arend Sidow, Andrew Fire, Steven Johnson - Genome Research 2008 被引用: 578
- Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity
著者: Eric A. Stone, Arend Sidow - Genome Research 2005 被引用: 428
- Extensive sequencing of seven human genomes to characterize benchmark reference materials
著者: Justin M. Zook, David Catoe, Jennifer McDaniel, Lindsay Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Chris Mason, Noah Alexander, Elizabeth Hénaff, Feng Chen, Erich Jaeger, Ali Moshrefi, Khoa Pham, William Stedman, Tiffany Y Liang, Michael Saghbini, Željko Džakula, Alex Hastie, Han Cao, Gintaras Deikus, Eric Schadt, Robert Sebra, Ali Bashir, Rebecca Truty, Christopher Chang, Natali Gulbahce, Keyan Zhao, Srinka Ghosh, Fiona Hyland, Yutao Fu, Mark Chaisson, Chunlin Xiao, Jonathan Trow, Stephen T. Sherry, Alexander Wait Zaranek, Mad Price Ball, Jason Bobe, Preston W. Estep, George M. Church, Patrick Marks, Sofia Kyriazopoulou-Panagiotopoulou, Grace Zheng, Michael Schnall-Levin, Heather Ordonez, Patrice A. Mudivarti, Kristina Giorda, Ying Sheng, Karoline Bjarnesdatter Rypdal, Marc Salit - 2015 被引用: 116
- Jarid2/Jumonji Coordinates Control of PRC2 Enzymatic Activity and Target Gene Occupancy in Pluripotent Cells
著者: Jamy C. Peng, Anton Valouev, Tomek Swigut, Junmei Zhang, Yingming Zhao, Arend Sidow, Joanna Wysocka - Cell 2009 被引用: 538
- SHRiMP: Accurate Mapping of Short Color-space Reads
著者: Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno - PLoS Computational Biology, PLoS Comput. Biol. 2009 被引用: 590
- svviz: a read viewer for validating structural variants
著者: Noah Spies, Justin M. Zook, Marc L. Salit, Arend Sidow - Bioinformatics, Bioinform. 2015 被引用: 61
- Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
著者: Anton Valouev, David S. Johnson, Andreas Sundquist, Catherine Medina, Elizabeth D. Anton, Serafim Batzoglou, R Myers, Arend Sidow - Nature Methods 2008 被引用: 696
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
著者: Anshul Kundaje, Sofia Kyriazopoulou-Panagiotopoulou, Max Libbrecht, Cheryl L. Smith, Debasish Raha, Elliott E. Winters, Steven Johnson, M Snyder, Serafim Batzoglou, Arend Sidow - Genome Research 2012 被引用: 201
- Gene duplications and the origins of vertebrate development
著者: Peter W. H. Holland, Jordi García‐Fernàndez, Nic A. Williams, Arend Sidow - Development 1994 被引用: 970
- High-quality genome sequences of uncultured microbes by assembly of read clouds
著者: Alex Bishara, Eli L. Moss, Mikhail Kolmogorov, Alma E. Parada, Ziming Weng, Arend Sidow, Anne Dekas, Serafim Batzoglou, Ami S. Bhatt - Nature Biotechnology 2018 被引用: 138
- Genome evolution during progression to breast cancer
著者: Daniel E. Newburger, Dorna Kashef-Haghighi, Ziming Weng, Raheleh Salari, Robert T. Sweeney, Alayne Brunner, Shirley Zhu, Xiangqian Guo, Sushama Varma, Megan L. Troxell, Robert B. West, Serafim Batzoglou, Arend Sidow - Genome Research 2013 被引用: 115
- Benchmarking challenging small variants with linked and long reads
著者: Justin Wagner, Nathan D. Olson, Lindsay Harris, Jennifer McDaniel, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stanković, Vladimir Kovačević, Byunggil Yoo, Neil Miller, Jeffrey Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael C. Schatz, Giuseppe Narzisi, Marta Byrska-Bishop, Wayne E. Clarke, Uday S. Evani, Charles Markello, Kishwar Shafin, Xin Zhou, Arend Sidow, Vikas Bansal, Peter Ebert, Tobias Marschall, Peter M. Lansdorp, Vincent C. T. Hanlon, Carl-Adam Mattsson, Álvaro Martínez Barrio, Ian T. Fiddes, Chunlin Xiao, Arkarachai Fungtammasan, Chen-Shan Chin, Aaron M. Wenger, William J. Rowell, Fritz J. Sedlazeck, Andrew Carroll, Marc Salit, Justin M. Zook - 2020 被引用: 60
- Comprehensive genomic characterization of breast tumors with BRCA1 and BRCA2 mutations
著者: Avantika Lal, Daniele Ramazzotti, Ziming Weng, Keli Liu, James M. Ford, Arend Sidow - BMC Medical Genomics 2019 被引用: 30
