Charles L. Brooks
1983–2025 年に発表
- 174
- 論文数
- 37,250
- 被引用数
- 103
- h 指数
- 167
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology53.5%
- Medicine12.2%
- Computer Science11.3%
- Physics and Astronomy5.1%
- Materials Science3.6%
- Chemistry3.3%
- その他11%
トピック
- Protein Structure and Dynamics14%
- Enzyme Structure and Function5.9%
- Computational Drug Discovery Methods5.9%
- RNA and protein synthesis mechanisms4.4%
- Spectroscopy and Quantum Chemical Studies3.4%
- Lipid Membrane Structure and Behavior2.4%
- その他64%
共著者
- Ryan L. Hayes10
- Florence Tama9
- Martin Karplus9
- Michael Feig9
- D.J. Price8
- Douglas J. Tobias8
- Alexander D. MacKerell6
- Alison R. H. Narayan6
- Jianhan Chen6
- Jonah Z. Vilseck6
- Wonpil Im6
- Jana Khandogin5
- Joan‐Emma Shea5
- Murray S. Mazer5
- Troy Wymore5
- Attabey Rodríguez Benítez4
- John Karanicolas4
- Joshua Buckner4
- José N. Onuchic4
- Vijay Reddy4
- Xinqiang Ding4
- Yujin Wu4
- Andrzej Koliński3
- Anna K. Mapp3
全論文
- CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field
著者: Jumin Lee, Xi Cheng, Jason Swails, Min Sun Yeom, Peter Eastman, Justin A. Lemkul, Shuai Wei, Joshua Buckner, Jong Cheol Jeong, Yifei Qi, Sunhwan Jo, Vijay S. Pande, David A. Case, Charles L. Brooks, Alexander D. MacKerell, Jeffery B. Klauda, Wonpil Im - Journal of Chemical Theory and Computation 2015 被引用: 4,325
- A modified TIP3P water potential for simulation with Ewald summation
著者: D.J. Price, Charles L. Brooks - The Journal of Chemical Physics 2004 被引用: 1,676
- Detailed analysis of grid-based molecular docking: A case study of CDOCKER - A CHARMm-based MD docking algorithm
著者: Guosheng Wu, D. H. Robertson, Charles L. Brooks, Michal Vieth - Journal of Computational Chemistry, J. Comput. Chem. 2003 被引用: 1,551
- Improved Treatment of the Protein Backbone in Empirical Force Fields
著者: Alexander D. MacKerell, Michael Feig, Charles L. Brooks - Journal of the American Chemical Society 2003 被引用: 1,010
- Parametrization of halogen bonds in the CHARMM general force field: Improved treatment of ligand–protein interactions
著者: Ignacio Soteras, Fang-Yu Lin, Kenno Vanommeslaeghe, Justin A. Lemkul, Kira A. Armacost, Charles L. Brooks, Alexander D. MacKerell - Bioorganic & Medicinal Chemistry 2016 被引用: 297
- Molecular Mechanism for Isoform-Selective Inhibition of Acyl Protein Thioesterases 1 and 2 (APT1 and APT2)
著者: Sang Joon Won, Dahvid Davda, Kristin Jansen Labby, Sin Ye Hwang, Rachel Pricer, Jaimeen D. Majmudar, Kira A. Armacost, Laura A. Rodriguez, Christina L. Rodriguez, Fei San Chong, Kristopher A. Torossian, Jasmine Palakurthi, Edward S. Hur, Jennifer L. Meagher, Charles L. Brooks, Jeanne A. Stuckey, Brent R. Martin - ACS Chemical Biology 2016 被引用: 110
- Deciphering protein evolution and fitness landscapes with latent space models
著者: Xinqiang Ding, Zhengting Zou, Charles L. Brooks - Nature Communications 2019 被引用: 115
- λ-dynamics: A new approach to free energy calculations
著者: Xianjun Kong, Charles L. Brooks - The Journal of Chemical Physics 1996 被引用: 376
- CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed
著者: Wonmuk Hwang, Steven L. Austin, Arnaud Blondel, Eric D. Boittier, Stefan Boresch, Matthias Buck, Joshua Buckner, Amedeo Caflisch, Hao-Ting Chang, Xi Cheng, Yeol Kyo Choi, Jhih‐Wei Chu, Michael F. Crowley, Qiang Cui, A. Damjanović, Yuqing Deng, M. Devereux, Xinqiang Ding, Michael Feig, Jiali Gao, David R. Glowacki, James E. Gonzales, Mehdi Bagheri Hamaneh, Edward Harder, Ryan L. Hayes, Jing Huang, Yandong Huang, Phillip S. Hudson, Wonpil Im, Shahidul M. Islam, Wei Jiang, Michael R. Jones, Silvan Käser, Fiona L. Kearns, Nathan R. Kern, Jeffery B. Klauda, Themis Lazaridis, Jinhyuk Lee, Justin A. Lemkul, Xiaorong Liu, Yun Luo, Alexander D. MacKerell, Dan Thomas Major, Markus Meuwly, Kwangho Nam, Lennart Nilsson, Victor Ovchinnikov, Emanuele Paci, Soohyung Park, Richard W. Pastor, Amanda R. Pittman, Carol Beth Post, Samarjeet Prasad, Jingzhi Pu, Yifei Qi, Thenmalarchelvi Rathinavelan, Daniel R. Roe, Benoı̂t Roux, Christopher N. Rowley, Jana Shen, Andrew C. Simmonett, Alexander J. Sodt, Kai Töpfer, Meenu Upadhyay, Arjan van der Vaart, Luis Itza Vazquez-Salazar, Richard M. Venable, Luke Warrensford, H. Lee Woodcock, Yujin Wu, Charles L. Brooks, Bernard R. Brooks, Martin Karplus - The Journal of Physical Chemistry B 2024 被引用: 114
- Albumin Binding to FcRn: Distinct from the FcRn−IgG Interaction
著者: Chaity Chaudhury, Charles L. Brooks, Daniel C. Carter, John M. Robinson, Clark L. Anderson - Biochemistry 2006 被引用: 282
- Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
著者: Chang-Hwa Chiang, Troy Wymore, Attabey Rodríguez Benítez, Azam Hussain, Janet L. Smith, Charles L. Brooks, Alison R. H. Narayan - National Academy of Sciences, Proceedings of the National Academy of Sciences 2023 被引用: 35
- Hierarchy of RNA Functional Dynamics
著者: Anthony M. Mustoe, Charles L. Brooks, Hashim M. Al‐Hashimi - Annual Review of Biochemistry 2014 被引用: 217
- Constant‐pH molecular dynamics using continuous titration coordinates
著者: Michael S. Lee, Freddie R. Salsbury, Charles L. Brooks - Proteins Structure Function and Bioinformatics 2004 被引用: 368
- MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology
著者: Michael Feig, John Karanicolas, Charles L. Brooks - Journal of Molecular Graphics and Modelling 2004 被引用: 887
- Stochastic boundary conditions for molecular dynamics simulations of ST2 water
著者: Axel T. Brünger, Charles L. Brooks, Martin Karplus - Chemical Physics Letters 1984 被引用: 634
- Multisite λ Dynamics for Simulated Structure–Activity Relationship Studies
著者: Jennifer L. Knight, Charles L. Brooks - Journal of Chemical Theory and Computation 2011 被引用: 110
- Automated, Accurate, and Scalable Relative Protein–Ligand Binding Free-Energy Calculations Using Lambda Dynamics
著者: E. Prabhu Raman, Thomas J. Paul, Ryan L. Hayes, Charles L. Brooks - Journal of Chemical Theory and Computation 2020 被引用: 78
- Constant pH Molecular Dynamics with Proton Tautomerism
著者: Jana Khandogin, Charles L. Brooks - Biophysical Journal 2005 被引用: 309
- Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing
著者: Julia R. Widom, Yuri A. Nedialkov, Victoria Rai, Ryan L. Hayes, Charles L. Brooks, Irina Artsimovitch, Nils G. Walter - Molecular Cell 2018 被引用: 85
- BLaDE: A Basic Lambda Dynamics Engine for GPU-Accelerated Molecular Dynamics Free Energy Calculations
著者: Ryan L. Hayes, Joshua Buckner, Charles L. Brooks - Journal of Chemical Theory and Computation 2021 被引用: 52
- Structural Basis for Selectivity in Flavin-Dependent Monooxygenase-Catalyzed Oxidative Dearomatization
著者: Attabey Rodríguez Benítez, Sara E. Tweedy, Summer A. Baker Dockrey, April L. Lukowski, Troy Wymore, Dheeraj Khare, Charles L. Brooks, Bruce A. Palfey, Janet L. Smith, Alison R. H. Narayan - ACS Catalysis 2019 被引用: 41
- Molecular Mechanisms of Prolactin and Its Receptor
著者: Charles L. Brooks - Endocrine Reviews 2012 被引用: 164
- Constant pH molecular dynamics of proteins in explicit solvent with proton tautomerism
著者: Garrett B. Goh, Benjamin S. Hulbert, Huiqing Zhou, Charles L. Brooks - Proteins Structure Function and Bioinformatics 2013 被引用: 131
- Adaptive Landscape Flattening Accelerates Sampling of Alchemical Space in Multisite λ Dynamics
著者: Ryan L. Hayes, Kira A. Armacost, Jonah Z. Vilseck, Charles L. Brooks - The Journal of Physical Chemistry B 2017 被引用: 78
