David K. Gifford
1977–2024 年に発表
- 160
- 論文数
- 35,093
- 被引用数
- 74
- h 指数
- 131
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology52.8%
- Computer Science31.2%
- Medicine8.1%
- Agricultural and Biological Sciences1.8%
- Neuroscience1.2%
- Engineering0.9%
- その他4%
トピック
- Genomics and Chromatin Dynamics5.8%
- Epigenetics and DNA Methylation3.7%
- Distributed systems and fault tolerance3.7%
- Bioinformatics and Genomic Networks3.7%
- Gene Regulatory Network Analysis3.2%
- Gene expression and cancer classification3%
- その他76.9%
共著者
- Richard A. Young21
- Tommi S. Jaakkola14
- Richard I. Sherwood12
- Hynek Wichterle10
- Georg K. Gerber9
- Haoyang Zeng9
- Tommi Jaakkola9
- Ziv Bar-Joseph9
- Alexander J. Hartemink8
- Ernest Fraenkel8
- Ge Liu8
- Yuchun Guo8
- James W. O'Toole Jr.7
- Jennifer Hammelman7
- Mark A. Sheldon7
- P. Alexander Rolfe7
- Robin D. Dowell7
- Shaun Mahony7
- Timothy Danford7
- Tong Ihn Lee7
- Zheng Dai7
- Andrzej Duda6
- Brandon Carter6
- Duncan T. Odom6
全論文
- Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells
著者: Laurie A. Boyer, Tong Ihn Lee, Megan F. Cole, Sarah E. Johnstone, Stuart S. Levine, Jacob Zucker, Matthew G. Guenther, Roshan Kumar, Heather L. Murray, Richard G. Jenner, David K. Gifford, Douglas A. Melton, Rudolf Jaenisch, Richard A. Young - Cell 2005 被引用: 4,523
- Predictable and precise template-free CRISPR editing of pathogenic variants
著者: Max W. Shen, Mandana Arbab, Jonathan Y. Hsu, Daniel Worstell, Sannie J. Culbertson, Olga Krabbe, Christopher A. Cassa, David R. Liu, David K. Gifford, Richard I. Sherwood - Nature, Nat. 2018 被引用: 644
- Polycomb complexes repress developmental regulators in murine embryonic stem cells
著者: Laurie A. Boyer, Kathrin Plath, Julia Zeitlinger, Tobias Brambrink, Lea A. Medeiros, Tong Ihn Lee, Stuart S. Levine, Marius Wernig, Adriana Tajonar, Mridula K. Ray, George W. Bell, Arie P. Otte, Miguel Vidal, David K. Gifford, Richard A. Young, Rudolf Jaenisch - Nature 2006 被引用: 2,529
- Convolutional neural network architectures for predicting DNA-protein binding
著者: Haoyang Zeng, Matthew D. Edwards, Ge Liu, David K. Gifford - Bioinformatics, Bioinform. 2016 被引用: 549
- Fast optimal leaf ordering for hierarchical clustering
著者: Ziv Bar-Joseph, David K. Gifford, Tommi S. Jaakkola - Bioinformatics, ISMB (Supplement of Bioinformatics) 2001 被引用: 571
- Polymorphic Effect Systems
著者: John M. Lucassen, David K. Gifford - SIGPLAN-SIGACT symposium on Principles of programming languages - POPL '88 1988 被引用: 480
- Generative modeling of single-cell time series with PRESCIENT enables prediction of cell trajectories with interventions
著者: Grace Hui Ting Yeo, Sachit D. Saksena, David K. Gifford - Nature Communications 2021 被引用: 100
- Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells
著者: Tong Ihn Lee, Richard G. Jenner, Laurie A. Boyer, Matthew G. Guenther, Stuart S. Levine, Roshan Kumar, B. Chevalier, Sarah E. Johnstone, Megan F. Cole, Kyoichi Isono, Haruhiko Koseki, Takuya Fuchikami, Kuniya Abe, Heather L. Murray, Jacob Zucker, Bingbing Yuan, George W. Bell, Elizabeth Herbolsheimer, Nancy M. Hannett, Kaiming Sun, Duncan T. Odom, Arie P. Otte, Thomas L. Volkert, David P. Bartel, Douglas A. Melton, David K. Gifford, Rudolf Jaenisch, Richard A. Young - Cell 2006 被引用: 2,274
- Control of Pancreas and Liver Gene Expression by HNF Transcription Factors
著者: Duncan T. Odom, Nora Zizlsperger, D. Benjamin Gordon, George W. Bell, Nicola J. Rinaldi, Heather L. Murray, Tom L. Volkert, J. Schreiber, P. Alexander Rolfe, David K. Gifford, Ernest Fraenkel, Graeme I. Bell, Richard A. Young - Science 2004 被引用: 1,334
- Transcriptional Regulatory Networks in Saccharomyces cerevisiae
著者: Tong Ihn Lee, Nicola J. Rinaldi, François Robert, Duncan T. Odom, Ziv Bar‐Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean‐Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young - Science 2002 被引用: 3,011
- Semantic File Systems
著者: David K. Gifford, Pierre Jouvelot, Mark A. Sheldon, James W. O'Toole Jr. - ACM SIGOPS Operating Systems Review, SOSP 1991 被引用: 384
- Training Data Attribution for Diffusion Models
著者: Zheng Dai, David K. Gifford - arXiv (Cornell University), CoRR 2023 被引用: 21
- CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
著者: Shantanu Jain, Constantina Bakolitsa, Steven E. Brenner, Predrag Radivojac, John Moult, Susanna Repo, Roger A. Hoskins, Gaia Andreoletti, Daniel Barsky, Ajithavalli Chellapan, Hoyin Chu, Navya Dabbiru, Naveen K. Kollipara, Melissa Ly, Andrew J. Neumann, Lipika R. Pal, Eric Odell, Gaurav Pandey, Robin C. Peters-Petrulewicz, Rajgopal Srinivasan, Stephen F. Yee, Sri Jyothsna Yeleswarapu, Maya Zuhl, Ogün Adebalı, Ayoti Patra, M Beer, Raghavendra Hosur, Jian Peng, Brady Bernard, M. Victoria Berry, Shengcheng Dong, Alan P. Boyle, Aashish N. Adhikari, Jingqi Chen, Zhiqiang Hu, Robert Wang, Yaqiong Wang, Max J. Miller, Yanran Wang, Yana Bromberg, Paola Turina, Emidio Capriotti, James J. Han, Kıvılcım Öztürk, Hannah Carter, Giulia Babbi, Samuele Bovo, Pietro Di Lena, Pier Luigi Martelli, Castrense Savojardo, Rita Casadio, Melissa Cline, Greet De Baets, Sandra Bonache, Orland Dı́ez, Sara Gutiérrez‐Enríquez, Alejandro Fernández, Gemma Montalban, Lars Ootes, Selen Özkan, Natàlia Padilla, Casandra Riera, Xavier de la Cruz, Mark Diekhans, Peter J. Huwe, Qiong Wei, Qifang Xu, Roland L. Dunbrack, Valer Gotea, Laura Elnitski, Gennady Margolin, Piero Fariselli, Ivan V. Kulakovskiy, Vsevolod J. Makeev, Dmitry Penzar, Ilya E. Vorontsov, Alexander V. Favorov, Julia Forman, Marcia A. Hasenahuer, Marı́a Silvina Fornasari, Gustavo Parisi, Žiga Avsec, Muhammed Hasan Çelik, Thi Yen Duong Nguyen, Julien Gagneur, Fangyuan Shi, Matthew D. Edwards, Yuchun Guo, Kevin Tian, Haoyang Zeng, David K. Gifford, Jonathan Göke, Jan Zaucha, Julian Gough, Graham R. S. Ritchie, Adam Frankish, Jonathan M. Mudge, Jennifer Harrow, Erin L. Young, Yao Yu ほか 329 名 - Genome biology 2024 被引用: 58
- Integrating Functional and Imperative Programming
著者: David K. Gifford, John M. Lucassen - conference on LISP and functional programming - LFP '86 1986 被引用: 226
- Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
著者: Richard I. Sherwood, Tatsunori Hashimoto, Charles W O'Donnell, Sophia Lewis, Amira Barkal, John Peter van Hoff, Vivek Karun, Tommi Jaakkola, David K. Gifford - Nature Biotechnology 2014 被引用: 478
- A Peninsular Structure Coordinates Asynchronous Differentiation with Morphogenesis to Generate Pancreatic Islets
著者: Nadav Sharon, Raghav Chawla, Jonas Mueller, Jordan Vanderhooft, Luke James Whitehorn, Benjamin Rosenthal, Mads Gürtler, Ralph R. Estanboulieh, Dmitry Shvartsman, David K. Gifford, Cole Trapnell, D. A. Melton - Cell 2019 被引用: 130
- Transcriptional regulatory code of a eukaryotic genome
著者: Christopher Harbison, D. Benjamin Gordon, Tong Ihn Lee, Nicola J. Rinaldi, Kenzie D. MacIsaac, Timothy Danford, Nancy M. Hannett, Jean‐Bosco Tagne, David Reynolds, Jane Y. Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young - Nature 2004 被引用: 2,200
- Differentiated human stem cells resemble fetal, not adult, β cells
著者: Siniša Hrvatin, Charles W. O’Donnell, Francis Deng, Jeffrey R. Millman, Felicia W. Pagliuca, Philip diIorio, Alireza Rezania, David K. Gifford, Douglas A. Melton - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 被引用: 305
- Genotype to Phenotype: A Complex Problem
著者: Robin D. Dowell, Owen Ryan, An Jansen, Doris Cheung, Sudeep D. Agarwala, Timothy Danford, Douglas A. Bernstein, P. Alexander Rolfe, Lawrence E. Heisler, Brian Chin, Corey Nislow, Guri Giaever, Patrick C. Phillips, Gerald R. Fink, David K. Gifford, Charles Boone - Science 2010 被引用: 436
- High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints
著者: Yuchun Guo, Shaun Mahony, David K. Gifford - PLoS Computational Biology, PLoS Comput. Biol. 2012 被引用: 339
- Transcriptional dynamics of murine motor neuron maturation in vivo and in vitro
著者: Tulsi Patel, Jennifer Hammelman, Siaresh Aziz, Sumin Jang, Michael Closser, Theodore L. Michaels, Jacob A. Blum, David K. Gifford, Hynek Wichterle - Nature Communications 2022 被引用: 47
- Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast
著者: Dmitry Pokholok, Christopher Harbison, Stuart S. Levine, Megan F. Cole, Nancy M. Hannett, Tong Ihn Lee, George W. Bell, Kimberly A. Walker, P. Alex Rolfe, Elizabeth Herbolsheimer, Julia Zeitlinger, F. Lewitter, David K. Gifford, Richard A. Young - Cell 2005 被引用: 1,461
- Quantification of Uncertainty in Peptide-MHC Binding Prediction Improves High-Affinity Peptide Selection for Therapeutic Design
著者: Haoyang Zeng, David K. Gifford - Cell Systems 2019 被引用: 80
- Wnt Signaling Separates the Progenitor and Endocrine Compartments during Pancreas Development
著者: Nadav Sharon, Jordan Vanderhooft, Juerg Straubhaar, Jonas Mueller, Raghav Chawla, Quan Zhou, Elise N. Engquist, Cole Trapnell, David K. Gifford, Douglas A. Melton - Cell Reports 2019 被引用: 136
