David W. Ussery
1994–2025 年に発表
- 61
- 論文数
- 20,708
- 被引用数
- 50
- h 指数
- 60
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology57.6%
- Agricultural and Biological Sciences13.8%
- Medicine11.1%
- Environmental Science8%
- Immunology and Microbiology2.6%
- Computer Science2.5%
- その他4.4%
トピック
- Genomics and Phylogenetic Studies9.3%
- Gut microbiota and health4.7%
- Antibiotic Resistance in Bacteria4.2%
- Microbial Community Ecology and Physiology3.5%
- Bacteriophages and microbial interactions3.3%
- RNA and protein synthesis mechanisms2.6%
- その他72.4%
共著者
- Intawat Nookaew13
- Trudy M. Wassenaar13
- Piroon Jenjaroenpun10
- Thidathip Wongsurawat10
- Visanu Wanchai6
- Carsten Friis5
- Frank M. Aarestrup5
- Oksana Lukjančenko5
- Ole Lund5
- Peter F. Hallin5
- Se‐Ran Jun5
- Tim T. Binnewies4
- Anders Krogh3
- George M Garrity3
- Gunnar Boysen3
- Hans‐Henrik Stærfeldt3
- Hans‐Peter Klenk3
- Jay C. D. Hinton3
- Lars Juhl Jensen3
- Pimlapas Leekitcharoenphon3
- Simon Rasmussen3
- Søren Brunak3
- Tatiana Tatusova3
- A.E. Tupper2
全論文
- RNAmmer: consistent and rapid annotation of ribosomal RNA genes
著者: Karin Lagesen, Peter F. Hallin, Einar Andreas Rødland, Hans-Henrik Stærfeldt, Torbjørn Rognes, David W. Ussery - Nucleic Acids Research 2007 被引用: 6,319
- Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
著者: Mette Voldby Larsen, Salvatore Cosentino, Simon Rasmussen, Carsten Friis, Henrik Hasman, Rasmus L. Marvig, Lars Jelsbak, Thomas Sicheritz‐Pontén, David W. Ussery, Frank M. Aarestrup, Ole Lund - Journal of Clinical Microbiology 2012 被引用: 2,358
- Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
著者: H Bjørn Nielsen, Mathieu Almeida, Agnieszka Sierakowska Juncker, Simon Rasmussen, Junhua Li, Shinichi Sunagawa, Damian R. Plichta, Laurent Gautier, Anders Gorm Pedersen, Emmanuelle Le Chatelier, Éric Pelletier, Ida Bonde, Trine Nielsen, Chaysavanh Manichanh, Manimozhiyan Arumugam, Jean-Michel Batto, Marcelo Bertalan Quintanilha dos Santos, Nikolaj Blom, Natalia Borruel, Kristoffer Sølvsten Burgdorf, Fouad Boumezbeur, Francesc Casellas, Joël Doré, Piotr Dworzyński, Francisco Guarner, Torben Hansen, Falk Hildebrand, Rolf Sommer Kaas, Sean P. Kennedy, Karsten Kristiansen, Jens Roat Kultima, Pierre Léonard, Florence Levenez, Ole Lund, Bouziane Moumen, Denis Le Paslier, Nicolas Pons, Oluf Pedersen, Edi Prifti, Junjie Qin, Jeroen Raes, Søren J. Sørensen, Julien Tap, Sebastian Tims, David W. Ussery, Takuji Yamada, Pierre Renault, Thomas Sicheritz‐Pontén, Peer Bork, Jun Wang, Søren Brunak, S. Dusko Ehrlich - Nature Biotechnology 2014 被引用: 1,308
- Machine Learning Methods in Drug Discovery
著者: Lauv Patel, Tripti Shukla, Xiuzhen Huang, David W. Ussery, Shanzhi Wang - Molecules 2020 被引用: 452
- Decoding the epitranscriptional landscape from native RNA sequences
著者: Piroon Jenjaroenpun, Thidathip Wongsurawat, Taylor D. Wadley, Trudy M. Wassenaar, Jun Liu, Qing Dai, Visanu Wanchai, Nisreen Akel, Azemat Jamshidi‐Parsian, Aime T. Franco, Gunnar Boysen, Michael L. Jennings, David W. Ussery, Chuan He, Intawat Nookaew - Nucleic Acids Research 2020 被引用: 313
- Benchmarking of Methods for Genomic Taxonomy
著者: Mette Voldby Larsen, Salvatore Cosentino, Oksana Lukjančenko, Dhany Saputra, Simon Rasmussen, Henrik Hasman, Thomas Sicheritz‐Pontén, Frank M. Aarestrup, David W. Ussery, Ole Lund - Journal of Clinical Microbiology 2014 被引用: 397
- Insights from 20 years of bacterial genome sequencing
著者: Miriam Land, Loren Hauser, Se‐Ran Jun, Intawat Nookaew, Michael R. Leuze, Tae-Hyuk Ahn, Tatiana V. Karpinets, Ole Lund, Guruprased Kora, Trudy M. Wassenaar, Suresh Poudel, David W. Ussery - Functional & Integrative Genomics 2015 被引用: 737
- The Genomic Standards Consortium
著者: Dawn Field, Linda Amaral-Zettler, Guy Cochrane, James R. Cole, Peter Dawyndt, George M Garrity, Jack Gilbert, Frank Oliver Glöckner, Lynette Hirschman, Ilene Karsch‐Mizrachi, Hans‐Peter Klenk, Rob Knight, Renzo Kottmann, Nikos C. Kyrpides, Folker Meyer, Inigo San Gil, Susanna‐Assunta Sansone, Lynn M. Schriml, Peter Sterk, Tatiana Tatusova, David W. Ussery, Owen White, John Wooley - PLoS Biology 2011 被引用: 238
- Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
著者: Kaleb Z. Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M. Wassenaar, Michael S. Robeson, David W. Ussery - Communications Biology 2021 被引用: 127
- The minimum information about a genome sequence (MIGS) specification
著者: Dawn Field, George M Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas R. Thomson, Michael J. Allen, Samuel V. Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra L. Baldauf, Stuart Ballard, Jeffrey L. Boore, Guy Cochrane, James H. Cole, Peter Dawyndt, Paul de Vos, Claude W. dePamphilis, Robert A. Edwards, Nadeem Faruque, Robert A. Feldman, Jack A. Gilbert, Paul Gilna, Frank Oliver Glöckner, Philip Goldstein, Robert Guralnick, Dan H. Haft, David G. Hancock, Henning Hermjakob, Christiane Hertz‐Fowler, Philip Hugenholtz, Ian Joint, Leonid Kagan, Matthew D. Kane, Jessie Kennedy, George A. Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos C. Kyrpides, Jim Leebens‐Mack, Suzanna Lewis, Kelvin Li, Allyson Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer B. H. Martiny, Barbara A. Methé, Ilene Karsch‐Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita M. Proctor, Owen White, Susanna‐Assunta Sansone, Andrew J. Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah L. Turner, David W. Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth A. Wilson, Anil Wipat - Nature Biotechnology 2008 被引用: 1,164
- Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
著者: Herman J. Pel, Johannes H. de Winde, David B. Archer, Paul S. Dyer, Gerald Hofmann, Peter J. Schaap, Geoffrey Turner, Ronald P. de Vries, Richard Albang, Kaj Albermann, Mikael Rørdam Andersen, Jannick Dyrløv Bendtsen, Jacques Benen, Marco van den Berg, Stefaan Breestraat, Mark X. Caddick, Roland Contreras, Michael Cornell, Pedro M. Coutinho, Étienne Danchin, Alfons J. M. Debets, P. Dekker, Piet W M van Dijck, Alard van Dijk, Lubbert Dijkhuizen, Arnold J. M. Driessen, Christophe d’Enfert, Steven Geysens, Coenie Goosen, G.S.P. Groot, Piet W. J. de Groot, Thomas Guillemette, Bernard Henrissat, Marga Herweijer, Johannes P T W van den Hombergh, Cees A. M. J. J. van den Hondel, R. T. J. M. van der Heijden, Rachel M. van der Kaaij, Frans M. Klis, Harrie J. Kools, Christian P. Kubicek, Patricia A van Kuyk, Jürgen Lauber, Xin Lü, Marc J E C van der Maarel, R. Meulenberg, Hildegard Menke, Martin Mortimer, Jens Nielsen, Stephen G. Oliver, Maurien M. A. Olsthoorn, Károly Pál, Noël N. M. E. van Peij, Arthur F. J. Ram, Ursula Rinas, Johannes A. Roubos, Cees M. J. Sagt, Monika Schmoll, Jibin Sun, David W. Ussery, János Varga, Wouter Vervecken, Peter J J van de Vondervoort, Holger Wedler, Han A.B. Wösten, An‐Ping Zeng, Albert J. J. van Ooyen, Jaap Visser, Hein Stam - Nature Biotechnology 2007 被引用: 1,184
- A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut
著者: Fredrik Karlsson, David W. Ussery, Jens Nielsen, Intawat Nookaew - Microbial Ecology 2011 被引用: 184
- PARP1 Is Up-Regulated in Non-small Cell Lung Cancer Tissues in the Presence of the Cyanobacterial Toxin Microcystin
著者: Patrick L. Apopa, Lisa Alley, Rosalind B. Penney, Konstantinos Arnaoutakis, Matthew A. Steliga, Susan Jeffus, Emine Bircan, Banu Gopalan, Jing Jin, Preecha Patumcharoenpol, Piroon Jenjaroenpun, Thidathip Wongsurawat, Nishi Shah, Gunnar Boysen, David W. Ussery, Intawat Nookaew, Pebbles Fagan, Gürkan Bebek, Mohammed S. Orloff - Frontiers in Microbiology 2018 被引用: 128
- The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
著者: Carsten Kröger, Shane C. Dillon, Andrew D. S. Cameron, Kai Papenfort, Sathesh K. Sivasankaran, Karsten Hokamp, Yanjie Chao, Alexandra Sittka, Magali Hébrard, Kristian Händler, Aoife Colgan, Pimlapas Leekitcharoenphon, Gemma C. Langridge, Amanda J. Lohan, Brendan Loftus, Sacha Lucchini, David W. Ussery, Charles J. Dorman, Nicholas R. Thomson, Jörg Vogel, Jay C. D. Hinton - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 被引用: 404
- Mechanisms linking preterm birth to onset of cardiovascular disease later in adulthood
著者: Mahesh Bavineni, Trudy M. Wassenaar, Kanishk Agnihotri, David W. Ussery, Thomas F. Lüscher, Jawahar L. Mehta - European Heart Journal 2019 被引用: 109
- Rapid Sequencing of Multiple RNA Viruses in Their Native Form
著者: Thidathip Wongsurawat, Piroon Jenjaroenpun, Mariah K. Taylor, Jasper Lee, Aline Lavado Tolardo, Jyothi Parvathareddy, Sangam Kandel, Taylor D. Wadley, Bualan Kaewnapan, Niracha Athipanyasilp, Andrew M. Skidmore, Donghoon Chung, Chutikarn Chaimayo, Michael A. Whitt, Wannee Kantakamalakul, Ruengpung Sutthent, Navin Horthongkham, David W. Ussery, Colleen B. Jonsson, Intawat Nookaew - Frontiers in Microbiology 2019 被引用: 62
- A novel Cas9-targeted long-read assay for simultaneous detection of IDH1/2 mutations and clinically relevant MGMT methylation in fresh biopsies of diffuse glioma
著者: Thidathip Wongsurawat, Piroon Jenjaroenpun, Annick De Loose, Duah Alkam, David W. Ussery, Intawat Nookaew, Yuet‐Kin Leung, Shuk‐Mei Ho, John Day, Analiz Rodriguez - Acta Neuropathologica Communications 2020 被引用: 44
- Review and phylogenetic analysis ofqacgenes that reduce susceptibility to quaternary ammonium compounds inStaphylococcusspecies
著者: Trudy M. Wassenaar, David W. Ussery, Lene Nielsen, Hanne Ingmer - European Journal of Microbiology and Immunology 2015 被引用: 165
- Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus
著者: E. Fidelma Boyd, Ana Luisa V. Cohen, Lynn M. Naughton, David W. Ussery, Tim T. Binnewies, O. Colin Stine, Michelle A. Parent - BMC Microbiology 2008 被引用: 142
- Genome Sequencing Identifies Two Nearly Unchanged Strains of Persistent Listeria monocytogenes Isolated at Two Different Fish Processing Plants Sampled 6 Years Apart
著者: Anne Holch, Kristen M. Webb, Oksana Lukjančenko, David W. Ussery, Benjamin M. Rosenthal, Lone Gram - Applied and Environmental Microbiology 2013 被引用: 127
- Toward unrestricted use of public genomic data
著者: Rudolf Amann, Shakuntala Baichoo, Benjamin J. Blencowe, Peer Bork, Mark Borodovsky, Cath Brooksbank, Patrick Chain, Rita R. Colwell, Daniele Daffonchio, Antoine Danchin, Vı́ctor de Lorenzo, Pieter C. Dorrestein, ROBERT FINN, Claire M. Fraser, Jack A. Gilbert, Steven Hallam, Philip Hugenholtz, John P. A. Ioannidis, Janet Jansson, Jihyun F. Kim, Hans-Peter Klenk, Martin G. Klotz, Rob Knight, Konstantinos T. Konstantinidis, Nikos C. Kyrpides, Christopher E. Mason, Alice C. McHardy, Folker Meyer, Christos Ouzounis, A.A.N. Patrinos, Mircea Podar, Katherine S. Pollard, Jacques Ravel, Alejandro Reyes, Richard J. Roberts, Ramon Rosselló‐Móra, Susanna‐Assunta Sansone, Patrick D. Schloss, Lynn M. Schriml, João Carlos Setúbal, Rotem Sorek, Rick Stevens, James M. Tiedje, Adrián G. Turjanski, Gene W. Tyson, David W. Ussery, George M. Weinstock, Owen White, William B. Whitman, Ioannis Xénarios - Science 2019 被引用: 61
- Comparison of 61 Sequenced Escherichia coli Genomes
著者: Oksana Lukjančenko, Trudy M. Wassenaar, David W. Ussery - Microbial Ecology 2010 被引用: 544
- The chromatin‐associated protein H‐NS alters DNA topology in vitro.
著者: A.E. Tupper, Tom Owen‐Hughes, David W. Ussery, Diógenes Santiago Santos, David Ferguson, Julie M. Sidebotham, Jay C. D. Hinton, C. F. Higgins - The EMBO Journal 1994 被引用: 227
- The Complete Genome Sequence and Analysis of the Epsilonproteobacterium Arcobacter butzleri
著者: William G. Miller, Craig T. Parker, Marc Rubenfield, George L. Mendz, Marc M. S. M. Wösten, David W. Ussery, John F. Stolz, Tim T. Binnewies, Peter F. Hallin, Guilin Wang, Joel A. Malek, Andrea Rogosin, Larry H. Stanker, Robert E. Mandrell - PLoS ONE 2007 被引用: 225
