Haiyuan Yu
2001–2025 年に発表
- 98
- 論文数
- 22,630
- 被引用数
- 56
- h 指数
- 86
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology72%
- Medicine7.7%
- Computer Science7.1%
- Physics and Astronomy4.3%
- Agricultural and Biological Sciences2.3%
- Chemistry1.8%
- その他4.8%
トピック
- Bioinformatics and Genomic Networks15.7%
- Computational Drug Discovery Methods5.4%
- Gene Regulatory Network Analysis3.9%
- Protein Structure and Dynamics3.9%
- Microbial Metabolic Engineering and Bioproduction3.5%
- Machine Learning in Bioinformatics3.3%
- その他64.3%
共著者
- Mark Gerstein22
- Jishnu Das11
- Robert Fragoza11
- Shayne D. Wierbowski10
- Siqi Liang9
- Tong Hao8
- Xiaomu Wei8
- Jin Liang7
- M Snyder7
- Marc Vidal7
- Marcus B. Smolka7
- Pascal Falter‐Braun7
- Alberto Paccanaro6
- Cunyun Nie6
- Jean‐François Rual6
- K. Venkatesan6
- Michael J. Meyer6
- David E. Hill5
- Frederick P. Roth5
- Julie M. Sahalie5
- Kumar Yugandhar5
- Michael E. Cusick5
- Nicolas Simonis5
- Shagun Gupta5
全論文
- Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
著者: Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron Tikuisis, Thanuja Punna, José M. Peregrín-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan K. Beattie, Dawn P. Richards, Veronica Canadien, Atanas I. Lalev, Frank L. Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie Thompson, Gabe Musso, Peter St.Onge, Shaun Ghanny, Mandy Hiu Yi Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin K. O’Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack Greenblatt - Nature 2006 被引用: 2,992
- Detecting overlapping protein complexes in protein-protein interaction networks
著者: Tamás Nepusz, Haiyuan Yu, Alberto Paccanaro - Nature Methods 2012 被引用: 1,293
- HINT: High-quality protein interactomes and their applications in understanding human disease
著者: Jishnu Das, Haiyuan Yu - BMC Systems Biology, BMC Syst. Biol. 2012 被引用: 484
- A comprehensive SARS-CoV-2–human protein–protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets
著者: Yadi Zhou, Yuan Liu, Shagun Gupta, Mauricio I. Paramo, Yuan Hou, Chengsheng Mao, Yuan Luo, Julius Judd, Shayne D. Wierbowski, Marta Bertolotti, Mriganka Nerkar, Lara Jehi, Nir Drayman, Vlad Nicolaescu, Haley Gula, Savaş Tay, Glenn Randall, Pei‐Hui Wang, John T. Lis, Cédric Feschotte, Serpil C. Erzurum, Feixiong Cheng, Haiyuan Yu - Nature Biotechnology 2022 被引用: 200
- Current and future directions in network biology
著者: Marinka Žitnik, Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Arjun Krishnan, T. M. Murali, Predrag Radivojac, Sushmita Roy, Anaı̈s Baudot, Serdar Bozdag, Danny Z. Chen, Lenore Cowen, Kapil Devkota, Anthony Gitter, Sara J.C. Gosline, Pengfei Gu, Pietro Hiram Guzzi, Heng Huang, Meng Jiang, Ziynet Nesibe Kesimoglu, Mehmet Koyutürk, Jian Ma, Alexander R. Pico, Nataša Pržulj, Teresa M. Przytycka, Benjamin J. Raphael, Anna Ritz, Roded Sharan, Yang Shen, Mona Singh, Donna K. Slonim, Hanghang Tong, Xinan Yang, Byung-Jun Yoon, Haiyuan Yu, Tijana Milenković - Bioinformatics Advances 2024 被引用: 95
- An empirical framework for binary interactome mapping
著者: K. Venkatesan, Jean‐François Rual, Alexei Vázquez, Ulrich Stelzl, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Martina Zenkner, Xiaofeng Xin, Kwang Il Goh, Muhammed A. Yıldırım, Nicolas Simonis, Kathrin Heinzmann, Fana Gebreab, Julie M. Sahalie, Sebiha Cevik, Christophe Simon, Anne Sophie de Smet, Elizabeth Dann, Alex Smolyar, Arunachalam Vinayagam, Haiyuan Yu, David Szeto, Heather Borick, Amélie Dricot, Niels Klitgord, Ryan R. Murray, Chenwei Lin, Maciej Łałowski, Jan Timm, Kirstin Rau, Charles Boone, Pascal Falter‐Braun, Michael E. Cusick, Frederick P. Roth, David E. Hill, Jan Tavernier, Erich E. Wanker, Albert-Ĺaszló Barabási, Marc Vidal - Nature Methods 2008 被引用: 908
- The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
著者: Haiyuan Yu, Philip M. Kim, Emmett Sprecher, Valery Trifonov, Mark Gerstein - PLoS Computational Biology, PLoS Comput. Biol. 2007 被引用: 1,038
- Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis
著者: Yen-Sin Ang, Renee N. Rivas, Alexandre J. S. Ribeiro, Rohith Srivas, Janell Rivera, Nicole R. Stone, Karishma Pratt, Tamer Mohamed, Ji‐Dong Fu, C. Ian Spencer, Nathaniel D. Tippens, Molong Li, Anil Narasimha, Ethan Radzinsky, Anita J. Moon‐Grady, Haiyuan Yu, Beth L. Pruitt, M Snyder, Deepak Srivastava - Cell 2016 被引用: 317
- Loss of TMEM106B and PGRN leads to severe lysosomal abnormalities and neurodegeneration in mice
著者: Tuancheng Feng, Shuyi Mai, Jenn Marie Roscoe, Rory R Sheng, Mohammed Ullah, Junke Zhang, Isabel Iscol Katz, Haiyuan Yu, Wenjun Xiong, Fenghua Hu - EMBO Reports 2020 被引用: 111
- Predicting interactions in protein networks by completing defective cliques
著者: Haiyuan Yu, Alberto Paccanaro, Valery Trifonov, Mark Gerstein - Bioinformatics, Bioinform. 2006 被引用: 222
- DNMT1-mediated epigenetic silencing of TRAF6 promotes prostate cancer tumorigenesis and metastasis by enhancing EZH2 stability
著者: Zhongwei Li, Bingheng Li, Haiyuan Yu, Pengfei Wang, Wenwen Wang, Pingfu Hou, Minle Li, Sufang Chu, Junnian Zheng, Lijun Mao, Jin Bai - Oncogene 2022 被引用: 81
- In-depth and 3-dimensional exploration of the budding yeast phosphoproteome
著者: Michael C. Lanz, Kumar Yugandhar, Shagun Gupta, Ethan J. Sanford, Vítor M. Faça, Stephanie Vega, Aaron M.N. Joiner, J. Christopher Fromme, Haiyuan Yu, Marcus B. Smolka - EMBO Reports 2021 被引用: 176
- Transcription imparts architecture, function and logic to enhancer units
著者: Nathaniel D. Tippens, Jin Liang, Alden King-Yung Leung, Shayne D. Wierbowski, Abdullah Ozer, James G. Booth, John T. Lis, Haiyuan Yu - Nature Genetics 2020 被引用: 118
- A comparison of experimental assays and analytical methods for genome-wide identification of active enhancers
著者: Yao Li, Jin Liang, Abdullah Ozer, Alden King-Yung Leung, John T. Lis, Haiyuan Yu - Nature Biotechnology 2022 被引用: 93
- High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
著者: Haiyuan Yu, Pascal Falter‐Braun, Muhammed A. Yıldırım, Irma Lemmens, K. Venkatesan, Julie M. Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean‐François Rual, Amélie Dricot, Alexei Vázquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, A. De Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, M Snyder, Frederick P. Roth, Albert-Ĺaszló Barabási, Jan Tavernier, David E. Hill, Marc Vidal - Science 2008 被引用: 1,433
- SAAMBE-3D: Predicting Effect of Mutations on Protein–Protein Interactions
著者: Swagata Pahari, Gen Li, Adithya Krishna Murthy, Siqi Liang, Robert Fragoza, Haiyuan Yu, Emil Alexov - International Journal of Molecular Sciences 2020 被引用: 126
- Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
著者: Robert Fragoza, Jishnu Das, Shayne D. Wierbowski, Jin Liang, Tina N. Tran, Siqi Liang, Juan Felipe Beltrán, Christen A. Rivera-Erick, Kaixiong Ye, Ting‐Yi Wang, Yao Li, Matthew Mort, Peter D. Stenson, D.N. Cooper, Xiaomu Wei, Alon Keinan, John C. Schimenti, Andrew G. Clark, Haiyuan Yu - Nature Communications 2019 被引用: 78
- A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data
著者: Ronald Jansen, Haiyuan Yu, Dov Greenbaum, Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, M Snyder, Jack Greenblatt, Mark Gerstein - Science 2003 被引用: 1,281
- Germline Lysine-Specific Demethylase 1 ( LSD1/KDM1A ) Mutations Confer Susceptibility to Multiple Myeloma
著者: Xiaomu Wei, M. Nieves Calvo-Vidal, Siwei Chen, Gang Wu, María V. Revuelta, Jian Sun, Jinghui Zhang, Michael F. Walsh, Kim E. Nichols, Joseph Vijai, Carrie Snyder, Celine M. Vachon, James McKay, Shuping Wang, David Jayabalan, Lauren Jacobs, Dina Becirovic, Rosalie Griffin, Mykyta Artomov, Agnès Viale, Jayeshkumar Patel, Jude M. Phillip, Selina Chen‐Kiang, Karen Curtin, Mohamed E. Salama, Djordje Atanackovic, Rubén Niesvizky, Ola Landgren, Susan L. Slager, Lucy A. Godley, Jane E. Churpek, Judy E. Garber, Kenneth C. Anderson, Mark J. Daly, Robert G. Roeder, Charles Dumontet, Henry T. Lynch, Charles G. Mullighan, Nicola J. Camp, Kenneth Offit, Robert J. Klein, Haiyuan Yu, Leandro Cerchietti, Steven M. Lipkin - Cancer Research 2018 被引用: 82
- A structurally informed human protein–protein interactome reveals proteome-wide perturbations caused by disease mutations
著者: Dapeng Xiong, Yunguang Qiu, Junfei Zhao, Yadi Zhou, Dongjin Lee, Shobhita Gupta, Mateo Torres, Weiqiang Lü, Siqi Liang, Jin Joo Kang, Charis Eng, Joseph Loscalzo, Feixiong Cheng, Haiyuan Yu - Nature Biotechnology 2024 被引用: 38
- Interactome INSIDER: a structural interactome browser for genomic studies
著者: Michael J. Meyer, Juan Felipe Beltrán, Siqi Liang, Robert Fragoza, Aaron Rumack, Jin Liang, Xiaomu Wei, Haiyuan Yu - Nature Methods 2018 被引用: 178
- Pooled‐matrix protein interaction screens using Barcode Fusion Genetics
著者: Nozomu Yachie, Evangelia Petsalaki, Joseph Mellor, Jochen Weile, Yves Jacob, Marta Verby, Sedide Öztürk, Siyang Li, Atina G. Coté, Roberto Mosca, Jennifer J. Knapp, Minjeong Ko, Analyn Yu, Marinella Gebbia, Nidhi Sahni, S. Stephen Yi, Tanya Tyagi, Dayag Sheykhkarimli, Jonathan Roth, Cassandra J. Wong, Louai Musa, Jamie Snider, Yichun Liu, Haiyuan Yu, Pascal Falter‐Braun, Igor Štagljar, Tong Hao, Michael A. Calderwood, Laurence Pelletier, Patrick Aloy, David E. Hill, Marc Vidal, Frederick P. Roth - Molecular Systems Biology 2016 被引用: 128
- mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome
著者: Michael J. Meyer, Ryan Lapcevic, Alfonso E. Romero, Mark Yoon, Jishnu Das, Juan Felipe Beltrán, Matthew Mort, Peter D. Stenson, D.N. Cooper, Alberto Paccanaro, Haiyuan Yu - Human Mutation 2016 被引用: 142
- BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain
著者: Mohammad Reza Pourhaghighi, Peter E.A. Ash, Sadhna Phanse, Florian Goebels, Lucas ZhongMing Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed Taha Moutaoufik, Ramy Malty, Edyta Małolepsza, Kalliopi Tsafou, Aparna Nathan, Graham L. Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili - Cell Systems 2020 被引用: 86
