Matthew T. Weirauch
2003–2025 年に発表
- 129
- 論文数
- 24,094
- 被引用数
- 61
- h 指数
- 116
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology61.2%
- Medicine18.9%
- Agricultural and Biological Sciences5.5%
- Immunology and Microbiology5%
- Computer Science3.5%
- Neuroscience2.1%
- その他3.8%
トピック
- Genomics and Chromatin Dynamics5.4%
- RNA Research and Splicing5.2%
- RNA and protein synthesis mechanisms5%
- RNA modifications and cancer4%
- Bioinformatics and Genomic Networks2.8%
- Machine Learning in Bioinformatics2.4%
- その他75.2%
共著者
- Xiaoting Chen44
- Leah C. Kottyan29
- Sreeja Parameswaran18
- Timothy R. Hughes16
- Carmy Forney11
- Ally Yang10
- Marc E. Rothenberg10
- Mihai Albu10
- Artem Barski9
- John B. Harley9
- Lisa J. Martin8
- Xiaoming Lu8
- Gurjit K. Khurana Hershey7
- Joshua B. Benoit7
- Nathan Salomonis7
- Andrew VonHandorf6
- Mario Pujato6
- Nan Shen6
- Bahram Namjou5
- Brian Gebelein5
- Chao Yao5
- Dai Dai5
- Emily C. Jennings5
- Guojun Hou5
全論文
- The Human Transcription Factors
著者: Samuel A. Lambert, Arttu Jolma, Laura F. Campitelli, Pratyush Kumar Das, Yimeng Yin, Mihai Albu, Xiaoting Chen, Jussi Taipale, Timothy R. Hughes, Matthew T. Weirauch - Cell 2018 被引用: 3,687
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
著者: Babak Alipanahi, Andrew Delong, Matthew T. Weirauch, Brendan J. Frey - Nature Biotechnology 2015 被引用: 3,163
- Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
著者: Matthew T. Weirauch, Ally Yang, Mihai Albu, Atina G. Coté, Alejandro Montenegro‐Montero, Philipp Drewe, Hamed S. Najafabadi, Samuel A. Lambert, Ishminder K. Mann, Kate B. Cook, Hong Zheng, Alejandra Goity, Harm van Bakel, Jean-Claude Lozano, Mary Galli, Mathew G. Lewsey, Eryong Huang, Tuhin Mukherjee, Xiaoting Chen, John Reece-Hoyes, Sridhar Govindarajan, Gad Shaulsky, Albertha J.M. Walhout, François-Yves Bouget, Gunnar Rätsch, Luis Larrondo, Joseph R. Ecker, Timothy R. Hughes - Cell 2014 被引用: 2,061
- A compendium of RNA-binding motifs for decoding gene regulation
著者: Debashish Ray, Hilal Kazan, Kate B. Cook, Matthew T. Weirauch, Hamed S. Najafabadi, Xiao Li, Serge Gueroussov, Mihai Albu, Hong Zheng, Ally Yang, Hong Na, Manuel Irimia, Leah H. Matzat, Ryan K. Dale, Sarah A. Smith, Christopher A. Yarosh, Seth M. Kelly, Behnam Nabet, Desirea Mecenas, Weimin Li, Rakesh S. Laishram, Mei Qiao, Howard D. Lipshitz, Fabio Piano, Anita H. Corbett, Russ P. Carstens, Brendan J. Frey, Richard A. Anderson, Kristen W. Lynch, Luiz O. F. Penalva, Elissa P. Lei, Andrew G. Fraser, Benjamin J. Blencowe, Quaid Morris, Timothy R. Hughes - Nature, Nat. 2013 被引用: 1,646
- Gene–environment interactions and their impact on human health
著者: Samuel J. Virolainen, Andrew VonHandorf, Kenyatta C. M. F. Viel, Matthew T. Weirauch, Leah C. Kottyan - Genes and Immunity 2022 被引用: 292
- The transcription factor ZEB2 drives the formation of age-associated B cells
著者: Dai Dai, Shuangshuang Gu, Xiaxia Han, Huihua Ding, Yang Jiang, Xiao‐Ou Zhang, Chao Yao, Soon-Min Hong, Jinsong Zhang, Yiwei Shen, Guojun Hou, Bo Qu, Haibo Zhou, Yuting Qin, Yuke He, Jianyang Ma, Zhihua Yin, Zhizhong Ye, Jie Qian, Qian Jiang, Lihua Wu, Qiang Guo, Sheng Chen, Chuanxin Huang, Leah C. Kottyan, Matthew T. Weirauch, Carola G. Vinuesa, Nan Shen - Science 2024 被引用: 149
- PKM2-dependent metabolic skewing of hepatic Th17 cells regulates pathogenesis of non-alcoholic fatty liver disease
著者: Maria E. Moreno‐Fernandez, Daniel A. Giles, Jarren R. Oates, Calvin C. Chan, Michelle S. M. A. Damen, Jessica Doll, Traci E. Stankiewicz, Xiaoting Chen, Kashish Chetal, Rebekah Karns, Matthew T. Weirauch, Lindsey E. Romick‐Rosendale, Stavra A. Xanthakos, Rachel Sheridan, Sara Szabo, Amy S. Shah, Michael A. Helmrath, Thomas H. Inge, Hitesh Deshmukh, Nathan Salomonis, Senad Divanovic - Cell Metabolism 2021 被引用: 139
- Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity
著者: John B. Harley, Xiaoting Chen, Mario Pujato, Daniel Miller, Avery Maddox, Carmy Forney, Albert Frank Magnusen, Arthur Lynch, Kashish Chetal, Masashi Yukawa, Artem Barski, Nathan Salomonis, Kenneth M. Kaufman, Leah C. Kottyan, Matthew T. Weirauch - Nature Genetics 2018 被引用: 420
- AP-1 activity induced by co-stimulation is required for chromatin opening during T cell activation
著者: Masashi Yukawa, Sajjeev Jagannathan, Sushmitha Vallabh, Andrey Kartashov, Xiaoting Chen, Matthew T. Weirauch, Artem Barski - The Journal of Experimental Medicine 2019 被引用: 177
- Amphioxus functional genomics and the origins of vertebrate gene regulation
著者: Ferdinand Marlétaz, Panos Firbas, Ignacio Maeso, Juan J. Tena, Ozren Bogdanović, Malcolm Perry, Christopher D. R. Wyatt, Elisa de la Calle‐Mustienes, Stéphanie Bertrand, Demián Burguera, Rafael D. Acemel, Simon J. van Heeringen, Silvia Naranjo, Carlos Herrera-Úbeda, Ksenia Skvortsova, Sandra Jiménez-Gancedo, Daniel Aldea, Yamile Márquez, Lorena Buono, Iryna Kozmiková, Jon Permanyer, Alexandra Louis, Beatriz Albuixech-Crespo, Yann Le Pétillon, Anthony Léon, Lucie Subirana, Piotr J. Balwierz, Paul E. Duckett, Ensieh Farahani, Jean‐Marc Aury, Sophie Mangenot, Patrick Wincker, Ricard Albalat, Èlia Benito‐Gutiérrez, Cristian Cañestro, L. Filipe C. Castro, Salvatore D’Aniello, David Ferrier, Shengfeng Huang, Vincent Laudet, Gabriel Marais, Pierre Pontarotti, Michael Schubert, Hervé Seitz, Ildikó Somorjai, Tokiharu Takahashi, Olivier Mirabeau, Anlong Xu, Jr‐Kai Yu, Piero Carninci, Juan Ramón Martínez‐Morales, Hugues Roest Crollius, Zbyněk Kozmík, Matthew T. Weirauch, Jordi García‐Fernàndez, Ryan Lister, Boris Lenhard, Peter W. H. Holland, Héctor Escrivá, José Luis Gómez-Skármeta, Manuel Irimia - Nature 2018 被引用: 325
- The Genetic Landscape of a Cell
著者: Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St.Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renée L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy H.Y. Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne‐Claude Gingras, Quaid Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda Andrews, Charles Boone - Science 2010 被引用: 2,265
- Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy
著者: Guangyuan Li, Shweta Mahajan, Siyuan Ma, Erin D. Jeffery, Xuan Zhang, Anukana Bhattacharjee, Meenakshi Venkatasubramanian, Matthew T. Weirauch, Emily R. Miraldi, H. Leighton Grimes, Gloria Sheynkman, Tamara Tilburgs, Nathan Salomonis - Science Translational Medicine 2024 被引用: 70
- C2H2 zinc finger proteins greatly expand the human regulatory lexicon
著者: Hamed S. Najafabadi, Sanié Mnaimneh, Frank W. Schmitges, Michael Garton, Kathy N. Lam, Ally Yang, Mihai Albu, Matthew T. Weirauch, Ernest Radovani, Philip M. Kim, Jack Greenblatt, Brendan J. Frey, Timothy R. Hughes - Nature Biotechnology 2015 被引用: 376
- Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus
著者: Xianyong Yin, Kwang-Woo Kim, Hiroyuki Suetsugu, So‐Young Bang, Leilei Wen, Masaru Koido, Eunji Ha, Lu Liu, Yuma Sakamoto, Sungsin Jo, Rui‐Xue Leng, Nao Otomo, Viktoryia Laurynenka, Young-Chang Kwon, Yujun Sheng, Sugano Nobuhiko, Mi Yeong Hwang, Weiran Li, Masaya Mukai, Kyungheon Yoon, Minglong Cai, Kazuyoshi Ishigaki, Won Tae Chung, He Huang, Daisuke Takahashi, Shin‐Seok Lee, Mengwei Wang, Kohei Karino, Seung Cheol Shim, Xiaodong Zheng, Tomoya Miyamura, Young Mo Kang, Dong‐Qing Ye, Junichi Nakamura, Chang‐Hee Suh, Yuanjia Tang, Goro Motomura, Yong‐Beom Park, Huihua Ding, Takeshi Kuroda, Jung‐Yoon Choe, Chengxu Li, Hiroaki Niiro, Young‐Ho Park, Changbing Shen, Takeshi Miyamoto, Ga-Young Ahn, Wenmin Fei, Tsutomu Takeuchi, Jung-Min Shin, Keke Li, Yasushi Kawaguchi, Yeon‐Kyung Lee, Yongfei Wang, Koichi Amano, Dae Jin Park, Wanling Yang, Yoshifumi Tada, Ken Yamaji, Masato Shimizu, Takashi Atsumi, Akari Suzuki, Takayuki Sumida, Yukinori Okada, Koichi Matsuda, Keitaro Matsuo, Yuta Kochi, Leah C. Kottyan, Matthew T. Weirauch, Sreeja Parameswaran, Shruti Eswar, Hanan Salim, Xiaoting Chen, Kazuhiko Yamamoto, John B. Harley, Koichiro Ohmura, Tae‐Hwan Kim, Sen Yang, Takuaki Yamamoto, Bong-Jo Kim, Nan Shen, Shiro Ikegawa, Hye‐Soon Lee, Xuejun Zhang, Chikashi Terao, Yong Cui, Sang‐Cheol Bae - Annals of the Rheumatic Diseases 2020 被引用: 179
- Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease
著者: Leah C. Kottyan, Benjamin P. Davis, Joseph D. Sherrill, Kan Liu, Mark Rochman, Kenneth M. Kaufman, Matthew T. Weirauch, Samuel Vaughn, Sara Lázaro, Andrew Rupert, Mojtaba Kohram, Emily M. Stucke, Katherine A. Kemme, Albert Frank Magnusen, Hua He, Phillip J. Dexheimer, Mirna Chehade, Robert A. Wood, Robbie Pesek, Brian P. Vickery, David M. Fleischer, Robert Lindbad, Hugh A. Sampson, Vincent A. Mukkada, Phil E. Putnam, J. Pablo Abonia, Lisa J. Martin, John B. Harley, Marc E. Rothenberg - Nature Genetics 2014 被引用: 296
- Genetic Associations with Gestational Duration and Spontaneous Preterm Birth
著者: Ge Zhang, Bjarke Feenstra, Jonas Bačelis, Xueping Liu, Lisa M. Muglia, Julius Juodakis, Daniel E. Miller, Nadia K. Litterman, Panpan Jiang, Laura Russell, David A. Hinds, Youna Hu, Matthew T. Weirauch, Xiaoting Chen, Arun R. Chavan, Günter P. Wagner, Mihaela Pavličev, Mauris C. Nnamani, Jamie Maziarz, Minna K. Karjalainen, Mika Rämet, Verena Sengpiel, Frank Geller, Heather A. Boyd, Aarno Palotie, Allison M. Momany, Bruce Bedell, Kelli K. Ryckman, Johanna M. Huusko, Carmy Forney, Leah C. Kottyan, Mikko Hallman, Kari Teramo, Ellen A. Nøhr, George Davey Smith, Mads Melbye, Bo Jacobsson, Louis J. Muglia - New England Journal of Medicine 2017 被引用: 417
- “Stripe” transcription factors provide accessibility to co-binding partners in mammalian genomes
著者: Yongbing Zhao, Supriya V. Vartak, A. Conte, Xiang Wang, David A. Garcia, Evan Stevens, Seol Kyoung Jung, Kyong-Rim Kieffer-Kwon, Laura Vian, Timothy J. Stodola, Francisco Morís, Laura B. Chopp, Silvia Preite, Pamela L. Schwartzberg, Joseph M. Kulinski, Ana Olivera, Christelle Harly, Avinash Bhandoola, Elisabeth F. Heuston, David M. Bodine, Raúl Urrutia, Arpita Upadhyaya, Matthew T. Weirauch, Gordon L. Hager, Rafael Casellas - Molecular Cell 2022 被引用: 73
- Paternally Inherited DLK1 Deletion Associated With Familial Central Precocious Puberty
著者: Andrew Dauber, Marina Cunha-Silva, Delanie B. Macedo, Vinícius Nahime Brito, Ana Paula Abreu, Stephanie Roberts, Luciana Ribeiro Montenegro, Melissa Andrew, Andrew Kirby, Matthew T. Weirauch, Guillaume Labilloy, Danielle S. Bessa, Rona S. Carroll, Dakota C. Jacobs, Patrick Chappell, Berenice B. Mendonça, David Haig, Ursula B. Kaiser, Ana Cláudia Latronico - The Journal of Clinical Endocrinology & Metabolism 2017 被引用: 216
- Similarity regression predicts evolution of transcription factor sequence specificity
著者: Samuel A. Lambert, Ally Yang, Alexander Sasse, Gwendolyn Cowley, Mihai Albu, Mark X. Caddick, Quaid Morris, Matthew T. Weirauch, Timothy R. Hughes - Nature Genetics 2019 被引用: 159
- Epstein–Barr virus nuclear antigen 2 extensively rewires the human chromatin landscape at autoimmune risk loci
著者: Ted Hong, Sreeja Parameswaran, Omer A. Donmez, Daniel Miller, Carmy Forney, Michael Lape, Mariana Saint Just Ribeiro, Jun Liang, Lee Edsall, Albert Frank Magnusen, William E. Miller, Iouri Chepelev, John B. Harley, Bo Zhao, Leah C. Kottyan, Matthew T. Weirauch - Genome Research 2021 被引用: 56
- Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
著者: Katherine Noelani Chang, Shan Zhong, Matthew T. Weirauch, Gary C. Hon, Mattia Pelizzola, Hai Li, Shao‐shan Carol Huang, Robert J. Schmitz, Mark A. Urich, Dwight Kuo, Joseph R. Nery, Hong Qiao, Ally Yang, Abdullah Jamali, Huaming Chen, Trey Ideker, Bing Ren, Ziv Bar‐Joseph, Timothy R. Hughes, Joseph R. Ecker - eLife 2013 被引用: 451
- AMP kinase promotes glioblastoma bioenergetics and tumour growth
著者: Rishi Raj Chhipa, Qiang Fan, Jane L. Anderson, Ranjithmenon Muraleedharan, Yan Huang, Georgianne M. Ciraolo, Xiaoting Chen, Ronald R. Waclaw, Lionel M.L. Chow, Zaza Khuchua, Matthew Kofron, Matthew T. Weirauch, Ady Kendler, Christopher McPherson, Nancy Ratner, Ichiro Nakano, Nupur Dasgupta, Kakajan Komurov, Biplab Dasgupta - Nature Cell Biology 2018 被引用: 162
- TOP1 inhibition therapy protects against SARS-CoV-2-induced lethal inflammation
著者: Jessica Ho, Bobo Wing-Yee Mok, Laura Campisi, Tristan X. Jordan, Soner Yildiz, Sreeja Parameswaran, Joseph A. Wayman, Natasha N. Gaudreault, David A. Meekins, Sabarish V. Indran, Igor Morozov, Jessie D. Trujillo, Yesai Fstkchyan, Raveen Rathnasinghe, Zeyu Zhu, Simin Zheng, Nan Zhao, Kris M. White, Helen Ray-Jones, Valeriya Malysheva, Michiel J. Thiecke, S. Lau, Honglian Liu, Anna Junxia Zhang, Andrew Chak-Yiu Lee, Wen‐Chun Liu, Sonia Jangra, Alba Escalera, Teresa Aydillo, Betsaida Salom Melo, Ernesto Guccione, Robert Sebra, Elaine Shum, Jan Bakker, David A. Kaufman, André L. Moreira, Mariano Carossino, Udeni B. R. Balasuriya, Minji Byun, Randy A. Albrecht, Michael Schotsaert, Adolfo García‐Sastre, Sumit K. Chanda, Emily R. Miraldi, Anand D. Jeyasekharan, Benjamin R. tenOever, Mikhail Spivakov, Matthew T. Weirauch, Sven Heinz, Honglin Chen, Christopher Benner, Jüergen A. Richt, Ivan Marazzi - Cell 2021 被引用: 126
- TSLP disease-associated genetic variants combined with airway TSLP expression influence asthma risk
著者: Liza Bronner Murrison, Xiaomeng Ren, Kristina Preuße, Hua He, John Kroner, Xiaoting Chen, Seth Jenkins, Elisabet Johansson, Jocelyn M. Biagini, Matthew T. Weirauch, Raphael Kopan, Lisa J. Martin, Gurjit K. Khurana Hershey - Journal of Allergy and Clinical Immunology 2021 被引用: 45
