Pedro Mendes
1988–2026 年に発表
- 119
- 論文数
- 22,052
- 被引用数
- 50
- h 指数
- 81
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology66.8%
- Computer Science8.8%
- Medicine6.8%
- Agricultural and Biological Sciences4.4%
- Engineering2.4%
- Decision Sciences2.2%
- その他8.6%
トピック
- Gene Regulatory Network Analysis10.7%
- Microbial Metabolic Engineering and Bioproduction9.8%
- Bioinformatics and Genomic Networks8.5%
- Metabolomics and Mass Spectrometry Studies4.8%
- Computational Drug Discovery Methods2.5%
- Biomedical Text Mining and Ontologies2.2%
- その他61.5%
共著者
- Neil Swainston15
- Douglas B. Kell14
- Kieran Smallbone14
- Joseph O. Dada8
- Michael Hucka8
- Stefan Hoops8
- Cláudia Pinto7
- Lloyd W. Sumner7
- André F. T. Martins6
- David Garlan6
- Jürgen Pahle6
- Nicolas Le Novère6
- Norman W. Paton6
- Paolo Romano6
- Warwick B. Dunn6
- Afonso Mendes5
- Daniel Jameson5
- Evangelos Simeonidis5
- Pedro H. Abreu5
- Ursula Kummer5
- Alberto de la Fuente4
- Hans V. Westerhoff4
- Helena Andrade Figueira4
- Irena Spasic4
全論文
- ChEBI in 2016: Improved services and an expanding collection of metabolites
著者: Janna Hastings, Gareth I. Owen, Adriano Dekker, Marcus Ennis, Namrata Kale, Venkatesh Muthukrishnan, Steve Turner, Neil Swainston, Pedro Mendes, Christoph Steinbeck - Nucleic Acids Research, Nucleic Acids Res. 2015 被引用: 1,158
- COPASI - a COmplex PAthway SImulator
著者: Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer - Bioinformatics, Bioinform. 2006 被引用: 2,694
- The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
著者: Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang - Bioinformatics, Bioinform. 2003 被引用: 3,150
- The metabolomics standards initiative (MSI)
著者: Oliver Fiehn, D. J. Robertson, Jules Griffin, Mariët Van Der Werf, Basil J. Nikolau, Norman Morrison, Lloyd W. Sumner, Royston Goodacre, Nigel Hardy, Chris Taylor, Jennifer Fostel, Bruce S. Kristal, Rima Kaddurah‐Daouk, Pedro Mendes, Ben van Ommen, John C. Lindon, Susanna‐Assunta Sansone - Metabolomics 2007 被引用: 504
- A community-driven global reconstruction of human metabolism
著者: Ines Thiele, Neil Swainston, Ronan M. T. Fleming, Andreas Hoppe, Swagatika Sahoo, Maike K. Aurich, Hulda S. Haraldsdóttir, Monica L. Mo, Óttar Rolfsson, Miranda D. Stobbe, Stefan Gretar Thorleifsson, Rasmus Ågren, Christian Bölling, Sergio Bordel, Arvind K. Chavali, Paul D. Dobson, Warwick B. Dunn, Lukas Endler, David Hala, Michael Hucka, Duncan Hull, Daniel Jameson, Neema Jamshidi, Jón J. Jónsson, Nick Juty, Sarah Keating, Intawat Nookaew, Nicolas Le Novère, Naglis Malys, Alexander Mazein, Jason A. Papin, Nathan D. Price, E Selkov, Martin I. Sigurðsson, Evangelos Simeonidis, Nikolaus Sonnenschein, Kieran Smallbone, Anatoly Sorokin, Hans van Beek, Dieter Weichart, Igor Goryanin, Jens Nielsen, Hans V. Westerhoff, Douglas B. Kell, Pedro Mendes, Bernhard Ø. Palsson - Nature Biotechnology 2013 被引用: 1,069
- Recon 2.2: from reconstruction to model of human metabolism
著者: Neil Swainston, Kieran Smallbone, Hooman Hefzi, Paul D. Dobson, Judy McKinley Brewer, Michael Hanscho, Daniel C. Zielinski, Kok Siong Ang, Natalie J. Gardiner, Jahir M. Gutierrez, Sarantos Kyriakopoulos, Meiyappan Lakshmanan, Shangzhong Li, Joanne K. Liu, Verónica S. Martínez, Camila A. Orellana, Lake‐Ee Quek, Alex Thomas, Jürgen Zanghellini, Nicole Borth, Dong‐Yup Lee, Lars K. Nielsen, Douglas B. Kell, Nathan E. Lewis, Pedro Mendes - Metabolomics 2016 被引用: 330
- Minimum information requested in the annotation of biochemical models (MIRIAM)
著者: Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S. Bhalla, Fabien Campagne, Julio Collado‐Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul MF Nielsen, Herbert M. Sauro, Bruce E. Shapiro, Jacky L. Snoep, H. D. Spence, Barry L. Wanner - Nature Biotechnology 2005 被引用: 635
- myo-Inositol Oxygenase Offers a Possible Entry Point into Plant Ascorbate Biosynthesis
著者: Argelia Lorence, Boris I. Chevone, Pedro Mendes, Craig L. Nessler - PLANT PHYSIOLOGY 2004 被引用: 516
- Potential of metabolomics as a functional genomics tool
著者: R.J. Bino, Robert D. Hall, Oliver Fiehn, Joachim Kopka, Kazuki Saito, John Draper, Basil J. Nikolau, Pedro Mendes, Ute Roessner, Michael H. Beale, Richard N. Trethewey, B. Markus Lange, Eve Syrkin Wurtele, Lloyd W. Sumner - Trends in Plant Science 2004 被引用: 785
- Discovery of meaningful associations in genomic data using partial correlation coefficients
著者: Alberto de la Fuente, Nan Bing, Ina Hoeschele, Pedro Mendes - Bioinformatics, Bioinform. 2004 被引用: 562
- COPASI and its applications in biotechnology
著者: Frank Bergmann, Stefan Hoops, Brian Klahn, Ursula Kummer, Pedro Mendes, Jürgen Pahle, Sven Sahle - Journal of Biotechnology 2017 被引用: 111
- Path2Models: large-scale generation of computational models from biochemical pathway maps
著者: Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère - BMC Systems Biology, BMC Syst. Biol. 2013 被引用: 181
- Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli
著者: Pierre Millard, Kieran Smallbone, Pedro Mendes - PLoS Computational Biology, PLoS Comput. Biol. 2017 被引用: 125
- Zinc depletion regulates the processing and secretion of IL-1β
著者: Holly Summersgill, Hazel England, Gloria López‐Castejón, Catherine B. Lawrence, Nadia Luheshi, Jürgen Pahle, Pedro Mendes, David Brough - Cell Death and Disease 2014 被引用: 107
- Plant metabolomics: large-scale phytochemistry in the functional genomics era
著者: Lloyd W. Sumner, Pedro Mendes, Richard A. Dixon - Phytochemistry 2003 被引用: 1,073
- Computational Modeling of Biochemical Networks Using COPASI
著者: Pedro Mendes, Stefan Hoops, Sven Sahle, Ralph Gauges, Joseph O. Dada, Ursula Kummer - Methods in molecular biology 2009 被引用: 212
- A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
著者: Markus J. Herrgård, Neil Swainston, Paul D. Dobson, Warwick B. Dunn, Kazım Yalçın Arğa, Mikko Arvas, Nils Blüthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novère, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana Paula Oliveira, Dina Petranović, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasié, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betül Kürdar, Merja Penttilä, Edda Klipp, Bernhard Ø. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell - Nature Biotechnology 2008 被引用: 607
- Controlled vocabularies and semantics in systems biology
著者: Mélanie Courtot, Nick Juty, Christian Knüpfer, Dagmar Waltemath, Anna Zhukova, Andreas Dräger, Michel Dumontier, Andrew Finney, Martin Golebiewski, Janna Hastings, Stefan Hoops, Sarah Keating, Douglas B. Kell, Samuel Kerrien, James R. Lawson, Allyson Lister, James Lu, Rainer Machné, Pedro Mendes, Matthew Pocock, Nicolás Rodríguez, Alice Villéger, Darren J. Wilkinson, Sarala Wimalaratne, Camille Laibe, Michael Hucka, Nicolas Le Novère - Molecular Systems Biology 2011 被引用: 331
- Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods
著者: Carmen G. Moles, Pedro Mendes, Julio R. Banga - Genome Research 2003 被引用: 872
- Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
著者: Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz - Briefings in Bioinformatics, Briefings Bioinform. 2020 被引用: 149
- Agent Based Models of Polymicrobial Biofilms and the Microbiome—A Review
著者: Sherli Koshy-Chenthittayil, Linda Archambault, Dhananjai Senthilkumar, Reinhard Laubenbacher, Pedro Mendes, Anna Dongari‐Bagtzoglou - Microorganisms 2021 被引用: 28
- The origin of correlations in metabolomics data
著者: Diogo M. Camacho, Alberto de la Fuente, Pedro Mendes - Metabolomics 2005 被引用: 282
- Multi-scale modelling and simulation in systems biology
著者: Joseph O. Dada, Pedro Mendes - Integrative Biology 2011 被引用: 210
- A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes
著者: Kieran Smallbone, Hanan L. Messiha, Kathleen Carroll, Catherine Winder, Naglis Malys, Warwick B. Dunn, Ettore Murabito, Neil Swainston, Joseph O. Dada, Farid Khan, Pınar Pir, Evangelos Simeonidis, Irena Spasić, Jill A. Wishart, Dieter Weichart, Neil W. Hayes, Daniel Jameson, David S. Broomhead, Stephen G. Oliver, Simon J. Gaskell, John E.G. McCarthy, Norman W. Paton, Hans V. Westerhoff, Douglas B. Kell, Pedro Mendes - FEBS Letters 2013 被引用: 145
