Stijn van Dongen
1998–2024 年に発表
- 32
- 論文数
- 20,691
- 被引用数
- 28
- h 指数
- 31
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology64.1%
- Medicine14%
- Agricultural and Biological Sciences5.5%
- Immunology and Microbiology5.4%
- Computer Science3.9%
- Physics and Astronomy2.2%
- その他4.9%
トピック
- MicroRNA in disease regulation13.9%
- Cancer-related molecular mechanisms research6.6%
- Circular RNAs in diseases5.5%
- RNA Research and Splicing3.7%
- RNA modifications and cancer3.5%
- Single-cell and spatial transcriptomics2.9%
- その他63.9%
共著者
- Anton J. Enright13
- Krzysztof Polański7
- Cei Abreu‐Goodger6
- Vladimir Yu Kiselev6
- Elena Prigmore5
- Justin Engelbert5
- Ni Huang5
- Rachel A. Botting5
- Emily Stephenson4
- Issac Goh4
- Kenny Roberts4
- Luz García‐Alonso4
- Anna Arutyunyan3
- Carmen Sancho‐Serra3
- Cecilia Mazzeo3
- Dave Horsfall3
- Elizabeth Tuck3
- Emma Dann3
- Kwasi Kwakwa3
- Lia S. Campos3
- Louis‐François Handfield3
- Michael D. Morgan3
- Michael Mather3
- Monika Dabrowska3
全論文
- Cells of the human intestinal tract mapped across space and time
著者: Rasa Elmentaite, Natsuhiko Kumasaka, Kenny Roberts, Aaron Fleming, Emma Dann, Hamish W. King, Vitalii Kleshchevnikov, Monika Dabrowska, Sophie Pritchard, Liam Bolt, Sara F. Vieira, Lira Mamanova, Ni Huang, Francesca Perrone, Issac Goh, Steven Lisgo, Matilda Katan, Steven Leonard, Thomas R. W. Oliver, C. Elizabeth Hook, Komal Nayak, Lia S. Campos, Cecilia Domínguez Conde, Emily Stephenson, Justin Engelbert, Rachel A. Botting, Krzysztof Polański, Stijn van Dongen, Minal Patel, Michael D. Morgan, John C. Marioni, Omer Ali Bayraktar, Kerstin B. Meyer, Xiaoling He, Roger A. Barker, Holm H. Uhlig, Krishnaa T. Mahbubani, Kourosh Saeb‐Parsy, Matthias Zilbauer, Menna R. Clatworthy, Muzlifah Haniffa, Kylie R. James, Sarah A. Teichmann - Nature 2021 被引用: 739
- Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
著者: Luz García‐Alonso, Louis‐François Handfield, Kenny Roberts, Κωνσταντίνα Νικολακοπούλου, Ridma C. Fernando, Lucy Gardner, Benjamin Woodhams, Anna Arutyunyan, Krzysztof Polański, Regina Hoo, Carmen Sancho‐Serra, Tong Li, Kwasi Kwakwa, Elizabeth Tuck, Valentina Lorenzi, Hassan Massalha, Martin Prete, Vitalii Kleshchevnikov, Aleksandra Tarkowska, Tarryn Porter, Cecilia Mazzeo, Stijn van Dongen, Monika Dabrowska, Vasyl Vaskivskyi, Krishnaa T. Mahbubani, Jong-eun Park, Mercedes Jimenez‐Liñan, Lia S. Campos, Vladimir Yu Kiselev, Cecilia Lindskog, Paul Ayuk, Elena Prigmore, Michael R. Stratton, Kourosh Saeb‐Parsy, Ashley Moffett, Luiza Moore, Omer Ali Bayraktar, Sarah A. Teichmann, Margherita Y. Turco, Roser Vento‐Tormo - Nature Genetics 2021 被引用: 692
- Single-cell roadmap of human gonadal development
著者: Luz García‐Alonso, Valentina Lorenzi, Cecilia Mazzeo, João Pedro Alves-Lopes, Kenny Roberts, Carmen Sancho‐Serra, Justin Engelbert, Magda Marečková, Wolfram H. Gruhn, Rachel A. Botting, Tong Li, Berta Crespo, Stijn van Dongen, Vladimir Yu Kiselev, Elena Prigmore, Mary Herbert, Ashley Moffett, Alain Chédotal, Omer Ali Bayraktar, M. Azim Surani, Muzlifah Haniffa, Roser Vento‐Tormo - Nature 2022 被引用: 485
- Single-cell multi-omics analysis of the immune response in COVID-19
著者: Emily Stephenson, Gary Reynolds, Rachel A. Botting, Fernando J. Calero‐Nieto, Michael D. Morgan, Zewen Kelvin Tuong, Karsten Bach, Waradon Sungnak, Kaylee B. Worlock, Masahiro Yoshida, Natsuhiko Kumasaka, Katarzyna Kania, Justin Engelbert, Bayanne Olabi, Jarmila Stremenova Spegarova, Nicola K. Wilson, Nicole Mende, Laura Jardine, Louis Gardner, Issac Goh, Dave Horsfall, Jim McGrath, Simone Webb, Michael Mather, Rik G.H. Lindeboom, Emma Dann, Ni Huang, Krzysztof Polański, Elena Prigmore, Florian Gothe, Jonathan Scott, Rebecca Payne, Kenneth F. Baker, Aidan T. Hanrath, Ina Schim van der Loeff, Andrew Barr, Amada Sanchez-Gonzalez, Laura Bergamaschi, Federica Mescia, Josephine L. Barnes, Eliz Kilich, Angus de Wilton, Anita Saigal, Aarash Saleh, Sam M. Janes, Claire M. Smith, Nusayhah Hudaa Gopee, Caroline Wilson, Paul Coupland, Jonathan Coxhead, Vladimir Yu Kiselev, Stijn van Dongen, Jaume Bacardit, Hamish W. King, Anthony Rostron, A. John Simpson, Sophie Hambleton, Elisa Laurenti, Paul Lyons, Kerstin B. Meyer, Marko Nikolić, C.J. Duncan, Kenneth G. C. Smith, Sarah A. Teichmann, Menna R. Clatworthy, John C. Marioni, Berthold Göttgens, Muzlifah Haniffa - Nature Medicine 2021 被引用: 827
- Graph Clustering Via a Discrete Uncoupling Process
著者: Stijn van Dongen - SIAM Journal on Matrix Analysis and Applications, SIAM J. Matrix Anal. Appl. 2008 被引用: 804
- miRBase: microRNA sequences, targets and gene nomenclature
著者: Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright - Nucleic Acids Research, Nucleic Acids Res. 2005 被引用: 4,845
- scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation
著者: Elo Madissoon, Anna Wilbrey-Clark, Ricardo J. Miragaia, Kourosh Saeb‐Parsy, Krishnaa T. Mahbubani, Nikitas Georgakopoulos, Philippa Harding, Krzysztof Polański, Ni Huang, Karol Nowicki-Osuch, Rebecca C. Fitzgerald, Kevin W. Loudon, John R. Ferdinand, Menna R. Clatworthy, A. Tsingene, Stijn van Dongen, M Dąbrowska, Minal Patel, Michael J. T. Stubbington, Sarah A. Teichmann, Oliver Stegle, Kerstin B. Meyer - Genome biology 2019 被引用: 574
- miRBase: tools for microRNA genomics
著者: Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright - Nucleic Acids Research, Nucleic Acids Res. 2007 被引用: 4,428
- Requirement of bic/microRNA-155 for Normal Immune Function
著者: Antony Rodriguez, Elena Vigorito, Simon Clare, Madhuri Warren, Philippe Couttet, Dalya R. Soond, Stijn van Dongen, Russell Grocock, Partha Pratim Das, Eric A. Miska, David Vetrie, Klaus Okkenhaug, Anton J. Enright, Gordon Dougan, Martin Turner, Allan Bradley - Science 2007 被引用: 1,847
- Zebrafish MiR-430 Promotes Deadenylation and Clearance of Maternal mRNAs
著者: Antonio J. Giráldez, Yuichiro Mishima, Jason Rihel, Russell Grocock, Stijn van Dongen, Kunio Inoue, Anton J. Enright, Alexander F. Schier - Science 2006 被引用: 1,642
- Yolk sac cell atlas reveals multiorgan functions during human early development
著者: Issac Goh, Rachel A. Botting, Antony Rose, Simone Webb, Justin Engelbert, Yorick Gitton, Emily Stephenson, Mariana Quiroga Londoño, Michael Mather, Nicole Mende, Iván Imaz-Rosshandler, Lu Yang, Dave Horsfall, Daniela Basurto-Lozada, Nana-Jane Chipampe, Victoria Rook, Jimmy Tsz Hang Lee, Mai-Linh Ton, Daniel Keitley, Pavel Mazin, M. S. Vijayabaskar, Rebecca Hannah, Laure Gambardella, Kile Green, Stéphane Ballereau, M. Inoue, Elizabeth Tuck, Valentina Lorenzi, Kwasi Kwakwa, Clara Alsinet, Bayanne Olabi, Mohi Miah, Chloe Admane, Dorin-Mirel Popescu, Meghan Acres, David Dixon, Thomas Ness, Rowen Coulthard, Steven Lisgo, Deborah J. Henderson, Emma Dann, Chenqu Suo, Sarah Kinston, Jong-Eun Park, Krzysztof Polański, John C. Marioni, Stijn van Dongen, Kerstin B. Meyer, Marella de Bruijn, James Palis, Sam Behjati, Elisa Laurenti, Nicola K. Wilson, Roser Vento‐Tormo, Alain Chédotal, Omer Ali Bayraktar, Irene Roberts, Laura Jardine, Berthold Göttgens, Sarah A. Teichmann, Muzlifah Haniffa - Science 2023 被引用: 98
- Using MCL to Extract Clusters from Networks
著者: Stijn van Dongen, Cei Abreu‐Goodger - Methods in molecular biology 2011 被引用: 482
- Kraken: A set of tools for quality control and analysis of high-throughput sequence data
著者: Matthew P. Davis, Stijn van Dongen, Cei Abreu‐Goodger, Nenad Bartoniček, Anton J. Enright - Methods 2013 被引用: 472
- Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench
著者: Ruben Chazarra-Gil, Stijn van Dongen, Vladimir Yu Kiselev, Martin Hemberg - Nucleic Acids Research 2021 被引用: 100
- Comparison of visualization tools for single-cell RNAseq data
著者: Batuhan Çakır, Martin Prete, Ni Huang, Stijn van Dongen, Pınar Pir, Vladimir Yu Kiselev - NAR Genomics and Bioinformatics 2020 被引用: 82
- Malignant Germ Cell Tumors Display Common MicroRNA Profiles Resulting in Global Changes in Expression of Messenger RNA Targets
著者: Roger D. Palmer, Matthew J. Murray, Harpreet K. Saini, Stijn van Dongen, Cei Abreu‐Goodger, Balaji Muralidhar, Mark R. Pett, Claire M. Thornton, James C. Nicholson, Anton J. Enright, Nicholas Coleman, on behalf of the Children's Cancer and Leukaemia Group - Cancer Research 2010 被引用: 292
- Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses
著者: Javier Rodríguez‐Ubreva, Anna Arutyunyan, Marc Jan Bonder, Lucía del Pino Molina, Stephen J. Clark, Carlos de la Calle‐Fabregat, Luz García‐Alonso, Louis‐François Handfield, Laura Ciudad, Eduardo Andrés‐León, Felix Krueger, Francesc Català‐Moll, Virginia Rodríguez-Cortez, Krzysztof Polański, Lira Mamanova, Stijn van Dongen, Vladimir Yu Kiselev, María T. Martínez-Saavedra, Holger Heyn, Javier Martı́n, Klaus Warnatz, Eduardo López‐Granados, Carlos Rodríguez‐Gallego, Oliver Stegle, Gavin Kelsey, Roser Vento‐Tormo, Esteban Ballestar - Nature Communications 2022 被引用: 50
- Myeloid cell interferon secretion restricts Zika flavivirus infection of developing and malignant human neural progenitor cells
著者: Harry Bulstrode, Gemma C. Girdler, Tannia Gracia, Alexander Aivazidis, Ilias Moutsopoulos, Adam M. H. Young, John F. Hancock, Xiufang He, Katherine Ridley, Zhaoyang Xu, John H. Stockley, John B. Finlay, Clément Hallou, Teodoro Fajardo, Daniel M. Fountain, Stijn van Dongen, Alexis Joannides, Robert Morris, Richard Mair, Colin Watts, Thomas Santarius, Stephen J. Price, Peter J. Hutchinson, Emma J. Hodson, Steven M. Pollard, Irina Mohorianu, Roger A. Barker, Trevor R. Sweeney, Omer Ali Bayraktar, Fanni Gergely, David H. Rowitch - Neuron 2022 被引用: 21
- RNA editing of human microRNAs
著者: Matthew J. Blow, Russell J Grocock, Stijn van Dongen, Anton J. Enright, Ed Dicks, P. Andrew Futreal, Richard Wooster, Michael R. Stratton - Genome biology 2006 被引用: 339
- An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice
著者: Morag A. Lewis, Elizabeth Quint, Anne M. Glazier, Helmut Fuchs, Martin Hrabě de Angelis, Cordelia Langford, Stijn van Dongen, Cei Abreu‐Goodger, Matias Piipari, Nick Redshaw, Tamás Dalmay, Miguel A. Moreno‐Pelayo, Anton J. Enright, Karen P. Steel - Nature Genetics 2009 被引用: 303
- Detecting microRNA binding and siRNA off-target effects from expression data
著者: Stijn van Dongen, Cei Abreu‐Goodger, Anton J. Enright - Nature Methods 2008 被引用: 278
- Performance criteria for graph clustering and Markov cluster experiments
著者: Stijn van Dongen - 2000 被引用: 223
- Targeted Deletion of MicroRNA-22 Promotes Stress-Induced Cardiac Dilation and Contractile Dysfunction
著者: Priyatansh Gurha, Cei Abreu‐Goodger, Tiannan Wang, Maricela Ramirez, Ana Luiza Drumond‐Bock, Stijn van Dongen, Yuqing Chen, Nenad Bartoniček, Anton J. Enright, Brendan Lee, Robert J. Kelm, Anilkumar K. Reddy, George E. Taffet, Allan Bradley, Xander H.T. Wehrens, Mark L. Entman, Antony Rodríguez - Circulation 2012 被引用: 186
- LIN28 Expression in Malignant Germ Cell Tumors Downregulates let-7 and Increases Oncogene Levels
著者: Matthew J. Murray, Harpreet K. Saini, Charlotte A. Siegler, Jennifer E. Hanning, Emily M. Barker, Stijn van Dongen, Dawn Ward, Katie L. Raby, Ian J. Groves, Cinzia G. Scarpini, Mark R. Pett, Claire M. Thornton, Anton J. Enright, James C. Nicholson, Nicholas Coleman - Cancer Research 2013 被引用: 82
