Timothy Durham

• Vamsi K. Mootha6
• William Stafford Noble4
• B Bernstein3
• Charles B. Epstein3
• Louis Gevirtzman3
• Michael J. Coyne3
• Noam Shoresh3
• Rahul Gupta3
• Xiaolan Zhang3
• Anna V. Kotrys2
• Benjamin M. Neale2
• Jason Ernst2
• Jason G. McCoy2
• Konrad J. Karczewski2
• Kristin Tsuo2
• Li Wang2
• Manolis Kellis2
• Masahiro Kanai2
• Patrick F. Chinnery2
• Robbyn Issner2
• Robert S. Rogers2
• Sarah E. Calvo2
• Xiaoyan A. Guo2
• Alan Min1

1. An integrated encyclopedia of DNA elements in the human genome

   著者: Ian Dunham, Ewan Birney, Javier Herrero, Steven P. Wilder, Damian Keefe, Kathryn Beal, Paul Flicek, Nathan Johnson, Daniel Sobral, Anshul Kundaje, Serafim Batzoglou, Nadine Hussami, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Marc A. Schaub, Shelley F. Aldred, Patrick Collins, Nathan D. Trinklein, Carrie A. Davis, Felix Schlesinger, T Gingeras, Alex Dobin, Wei Lin, Chenghai Xue, Chris Zaleski, Michael T. Baer, Philippe Batut, Kimberly Bell, Sudipto Chakrabortty, Jörg Drenkow, Megan Fastuca, Kata Fejes-Toth, Assaf Gordon, Sonali Jha, Jonathan Preall, Kimberly Presaud, Lei-Hoon See, Huaien Wang, Gregory J. Hannon, Francis Doyle, Scott A. Tenenbaum, Charles B. Epstein, Noam Shoresh, B Bernstein, Tarjei S. Mikkelsen, Alon Goren, Oren Ram, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Timothy Durham, Manching Ku, Thanh Truong, Seth Frietze, Peggy Farnham, Heather Witt, Jennifer Harrow, Timothy J. Hubbard, Felix Kokocinski, Bronwen Aken, Daniel Barrell, Gemma Barson, Andrew Berry, Alexandra Bignell, Veronika Boychenko, Claire Davidson, Gloria Despacio-Reyes, Adam Frankish, James Gilbert, José M. González, Ed Griffiths, Toby Hunt, Mike Kay, Jane Loveland, Deepa Manthravadi, Jonathan Mudge, Gaurab Mukherjee, Gary Saunders, Stephen Searle, Catherine Snow, Charlie Steward, Electra Tapanari, Laurens Wilming, Amonida Zadissa, Rajinder Kaul, Jainab Khatun, Morgan C. Giddings, John Wrobel, Brian A. Risk, Bryan R. Lajoie, Amartya Sanyal, Job Dekker, Gaurav Jain, Stephen G. Landt, M Snyder, Nick Addleman, Keith Bettinger, Alan P. Boyle, Philip Cayting - Nature 2012 被引用: 19,606

2. Mapping and analysis of chromatin state dynamics in nine human cell types

   著者: Jason Ernst, Pouya Kheradpour, Tarjei S. Mikkelsen, Noam Shoresh, Lucas D. Ward, Charles B. Epstein, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Manching Ku, Timothy Durham, Manolis Kellis, B Bernstein - Nature 2011 被引用: 3,096

3. Nuclear genetic control of mtDNA copy number and heteroplasmy in humans

   著者: Rahul Gupta, Masahiro Kanai, Timothy Durham, Kristin Tsuo, Jason G. McCoy, Anna V. Kotrys, Wei Zhou, Patrick F. Chinnery, Konrad J. Karczewski, Sarah E. Calvo, Benjamin M. Neale, Vamsi K. Mootha - Nature 2023 被引用: 178

4. Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe

   著者: Xiaojie Qiu, Arman Rahimzamani, Li Wang, Bingcheng Ren, Qi Mao, Timothy Durham, José L. McFaline‐Figueroa, Lauren M. Saunders, Cole Trapnell, Sreeram Kannan - Cell Systems 2020 被引用: 181

5. Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome

   著者: Jacob Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble - Genome biology 2020 被引用: 133

6. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds ofDrosophilaandCaenorhabditis elegansTranscription Factors

   著者: Michelle Kudron, Alec Victorsen, Louis Gevirtzman, LaDeana Hillier, William W. Fisher, Dionne Vafeados, Matt Kirkey, Ann S. Hammonds, Jeffery Gersch, Haneen Ammouri, Martha Wall, Jennifer Moran, David L. Steffen, Matt Szynkarek, Samantha Seabrook-Sturgis, Nader Jameel, Madhura Kadaba, Jaeda Patton, Robert Terrell, Mitch Corson, Timothy Durham, Soo Hyung Park, Swapna Samanta, Mei Han, Jinrui Xu, Koon‐Kiu Yan, S Celniker, Kevin P. White, Lijia Ma, Mark Gerstein, V Reinke, R Waterston - Genetics 2017 被引用: 257

7. Single-cell analysis reveals context-dependent, cell-level selection of mtDNA

   著者: Anna V. Kotrys, Timothy Durham, Xiaoyan A. Guo, Venkata R. Vantaku, Sareh Parangi, Vamsi K. Mootha - Nature 2024 被引用: 59

8. Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues

   著者: Jiang Zhu, Mazhar Adli, James Zou, Griet Verstappen, Michael J. Coyne, Xiaolan Zhang, Timothy Durham, Mohammad Reza Miri, Vikram Deshpande, Philip L. De Jager, David A. Bennett, Joseph A. Houmard, Deborah M. Muoio, Tamer T. Önder, Ray Camahort, Chad A. Cowan, Alexander Meissner, Charles B. Epstein, Noam Shoresh, B Bernstein - Cell 2013 被引用: 560

9. Hypoxia extends lifespan and neurological function in a mouse model of aging

   著者: Robert S. Rogers, Hong Wang, Timothy Durham, Jonathan A. Stefely, Norah A. Owiti, Andrew L. Markhard, L Sandler, Tsz‐Leung To, Vamsi K. Mootha - PLoS Biology 2023 被引用: 45

10. PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition

    著者: Timothy Durham, Maxwell W. Libbrecht, James Jeffry Howbert, Jeff Bilmes, William Stafford Noble - Nature Communications 2018 被引用: 96

11. Circulating N-lactoyl-amino acids and N-formyl-methionine reflect mitochondrial dysfunction and predict mortality in septic shock

    著者: Robert S. Rogers, Rohit Sharma, Hardik B. Shah, Owen S. Skinner, Xiaoyan A. Guo, Apekshya Panda, Rahul Gupta, Timothy Durham, Kelsey B Shaughnessy, Jared R. Mayers, Kathryn A. Hibbert, Rebecca M. Baron, Bruce Thompson, Vamsi K. Mootha - Metabolomics 2024 被引用: 31

12. Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

    著者: Timothy Durham, Riza M. Daza, Louis Gevirtzman, Darren A. Cusanovich, Olubusayo Bolonduro, William Stafford Noble, Jay Shendure, R Waterston - Genome Research 2021 被引用: 26

13. Nuclear genetic control of mtDNA copy number and heteroplasmy in humans

    著者: Rahul Gupta, Masahiro Kanai, Timothy Durham, Kristin Tsuo, Jason G. McCoy, Patrick F. Chinnery, Konrad J. Karczewski, Sarah E. Calvo, Benjamin M. Neale, Vamsi K. Mootha - medRxiv 2023 被引用: 15

14. Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells

    著者: Oren Ram, Alon Goren, Ido Amit, Noam Shoresh, Nir Yosef, Jason Ernst, Manolis Kellis, Melissa Gymrek, Robbyn Issner, Michael J. Coyne, Timothy Durham, Xiaolan Zhang, Julie Donaghey, Charles B. Epstein, Aviv Regev, B Bernstein - Cell 2011 被引用: 338

15. Hypoxia ameliorates neurodegeneration and movement disorder in a mouse model of Parkinson’s disease

    著者: Eizo Marutani, María Miranda, Timothy Durham, Sharon H. Kim, Drèson L. Russell, Presli P. Wiesenthal, Paul Lichtenegger, Marissa Menard, Charlotte F. Brzozowski, Haobo Li, Gary Ruvkun, Joshua D. Meisel, Laura A. Volpicelli‐Daley, Vamsi K. Mootha, Fumito Ichinose - Nature Neuroscience 2025 被引用: 15

16. Matrix prior for data transfer between single cell data types in latent Dirichlet allocation

    著者: Alan Min, Timothy Durham, Louis Gevirtzman, William Stafford Noble - PLoS Computational Biology, PLoS Comput. Biol. 2022 被引用: 1

全 16 件を表示しました。