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Yunshun Chen

2012–2025 年に発表

35
論文数
18,162
被引用数
20
h 指数
26
i10 指数

被引用数

Yunshun Chen の年別被引用数1957 年: 被引用 1 件1987 年: 被引用 1 件1999 年: 被引用 1 件2002 年: 被引用 1 件2003 年: 被引用 2 件2007 年: 被引用 2 件2010 年: 被引用 2 件2012 年: 被引用 6 件2013 年: 被引用 26 件2014 年: 被引用 86 件2015 年: 被引用 159 件2016 年: 被引用 206 件2017 年: 被引用 240 件2018 年: 被引用 275 件2019 年: 被引用 795 件2020 年: 被引用 904 件2021 年: 被引用 992 件2022 年: 被引用 797 件2023 年: 被引用 584 件2024 年: 被引用 955 件2025 年: 被引用 453 件2026 年: 被引用 16 件1958〜1986 年は被引用が無いため表示していません1988〜1998 年は被引用が無いため表示していません2000〜2001 年は被引用が無いため表示していません2004〜2006 年は被引用が無いため表示していません2008〜2009 年は被引用が無いため表示していません2011 年は被引用が無いため表示していません

引用元

国・地域

この著者を引用した国・地域の世界地図アメリカ合衆国: 引用元論文 3,306 件、この内訳の 30.7%中国: 引用元論文 801 件、この内訳の 7.4%イギリス: 引用元論文 703 件、この内訳の 6.5%ドイツ: 引用元論文 666 件、この内訳の 6.2%オーストラリア: 引用元論文 656 件、この内訳の 6.1%カナダ: 引用元論文 410 件、この内訳の 3.8%フランス: 引用元論文 393 件、この内訳の 3.7%スイス: 引用元論文 342 件、この内訳の 3.2%オランダ: 引用元論文 306 件、この内訳の 2.8%イタリア: 引用元論文 283 件、この内訳の 2.6%スペイン: 引用元論文 269 件、この内訳の 2.5%日本: 引用元論文 258 件、この内訳の 2.4%
0%30.7%その他 22.1%

機関

分野

  • Biochemistry, Genetics and Molecular Biology50.3%
  • Medicine27.5%
  • Immunology and Microbiology8.2%
  • Agricultural and Biological Sciences4.9%
  • Neuroscience4.5%
  • Environmental Science1.3%
  • その他3.3%

トピック

  • Single-cell and spatial transcriptomics4%
  • Gene expression and cancer classification2.7%
  • RNA modifications and cancer2.6%
  • RNA Research and Splicing2.3%
  • Cancer-related molecular mechanisms research2.3%
  • Epigenetics and DNA Methylation2.2%
  • その他83.9%

共著者

全論文

検索で開く
  1. voom: precision weights unlock linear model analysis tools for RNA-seq read counts

    著者: Charity W. Law, Yunshun Chen, Wei Shi, Gordon K. Smyth - Genome biology 2014 被引用: 6,748

  2. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

    著者: Davis J. McCarthy, Yunshun Chen, Gordon K. Smyth - Nucleic Acids Research 2012 被引用: 5,821

  3. From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline

    著者: Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth - F1000Research 2016 被引用: 1,349

  4. A single‐cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast

    著者: Bhupinder Pal, Yunshun Chen, François Vaillant, Bianca D. Capaldo, Rachel Joyce, Xiaoyu Song, Vanessa L. Bryant, Jocelyn Sietsma Penington, Leon Di Stefano, Nina Tubau Ribera, Stephen Wilcox, G. Bruce Mann, kConFab, Anthony T. Papenfuss, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader - The EMBO Journal 2021 被引用: 498

  5. Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

    著者: Simon Anders, Davis J. McCarthy, Yunshun Chen, Michał Okoniewski, Gordon K. Smyth, Wolfgang Huber, Mark D. Robinson - Nature Protocols 2013 被引用: 1,230

  6. It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR

    著者: Aaron T. L. Lun, Yunshun Chen, Gordon K. Smyth - Methods in molecular biology, Statistical Genomics 2016 被引用: 489

  7. Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures

    著者: Xueyi Dong, Mei R. M. Du, Quentin Gouil, Luyi Tian, Jafar S. Jabbari, Rory Bowden, Pedro L. Baldoni, Yunshun Chen, Gordon K. Smyth, Shanika L. Amarasinghe, Charity W. Law, Matthew E. Ritchie - Nature Methods 2023 被引用: 100

  8. edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets

    著者: Yunshun Chen, Lizhong Chen, Aaron T. L. Lun, Pedro L. Baldoni, Gordon K. Smyth - Nucleic Acids Research 2024 被引用: 570

  9. Mammary tumour cells remodel the bone marrow vascular microenvironment to support metastasis

    著者: Raymond K. H. Yip, Joel S. Rimes, Bianca D. Capaldo, François Vaillant, Kellie A. Mouchemore, Bhupinder Pal, Yunshun Chen, Elliot Surgenor, Andrew Murphy, Robin L. Anderson, Gordon K. Smyth, Geoffrey J. Lindeman, Edwin D. Hawkins, Jane E. Visvader - Nature Communications 2021 被引用: 101

  10. Intraclonal Plasticity in Mammary Tumors Revealed through Large-Scale Single-Cell Resolution 3D Imaging

    著者: Anne C. Rios, Bianca D. Capaldo, François Vaillant, Bhupinder Pal, Ravian van Ineveld, Caleb A. Dawson, Yunshun Chen, Emma Nolan, Nai Yang Fu, Felicity C. Jackling, Sapna Devi, David Clouston, Lachlan Whitehead, Gordon K. Smyth, Scott N. Mueller, Geoffrey J. Lindeman, Jane E. Visvader - Cancer Cell 2019 被引用: 168

  11. Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate

    著者: Timothy J. Peters, Michael Buckley, Yunshun Chen, Gordon K. Smyth, Christopher C. Goodnow, Susan J. Clark - Nucleic Acids Research 2021 被引用: 111

  12. Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling

    著者: Bhupinder Pal, Yunshun Chen, François Vaillant, Paul R. Jamieson, Lavinia Gordon, Anne C. Rios, Stephen Wilcox, Nai Yang Fu, Kevin He Liu, Felicity C. Jackling, Melissa J. Davis, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader - Nature Communications 2017 被引用: 205

  13. Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer

    著者: Delphine Mérino, Tom Weber, Antonin Serrano, François Vaillant, K. Liu, Bhupinder Pal, Leon Di Stefano, Jaring Schreuder, Dawn Lin, Yunshun Chen, Marie-Liesse Asselin-Labat, Ton N. Schumacher, Daniel Cameron, Gordon K. Smyth, Anthony T. Papenfuss, Geoffrey J. Lindeman, Jane E. Visvader, Shalin H. Naik - Nature Communications 2019 被引用: 153

  14. Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR

    著者: Pedro L. Baldoni, Yunshun Chen, Soroor Hediyeh-zadeh, Yang Liao, Xueyi Dong, Matthew E. Ritchie, Wei Shi, Gordon K. Smyth - Nucleic Acids Research 2023 被引用: 39

  15. R code and downstream analysis objects for the scRNA-seq atlas of normal and tumorigenic human breast tissue

    著者: Yunshun Chen, Bhupinder Pal, Geoffrey J. Lindeman, Jane E. Visvader, Gordon K. Smyth - Scientific Data 2022 被引用: 42

  16. Single cell transcriptome atlas of mouse mammary epithelial cells across development

    著者: Bhupinder Pal, Yunshun Chen, Michael J. G. Milevskiy, François Vaillant, Lexie Prokopuk, Caleb A. Dawson, Bianca D. Capaldo, Xiaoyu Song, Felicity C. Jackling, Paul Timpson, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader - Breast Cancer Research 2021 被引用: 72

  17. Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR

    著者: Yunshun Chen, Bhupinder Pal, Jane E. Visvader, Gordon K. Smyth - F1000Research 2017 被引用: 97

  18. Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data

    著者: Jinming Cheng, Gordon K. Smyth, Yunshun Chen - F1000Research 2023 被引用: 19

  19. Differential Expression Analysis of Complex RNA-seq Experiments Using edgeR

    著者: Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth - Statistical Analysis of Next Generation Sequencing Data 2014 被引用: 183

  20. Identification of aberrant luminal progenitors and mTORC1 as a potential breast cancer prevention target in BRCA2 mutation carriers

    著者: Rachel Joyce, Rosa Pascual, Luuk Heitink, Bianca D. Capaldo, François Vaillant, Michael Christie, Minhsuang Tsai, Elliot Surgenor, Casey J. A. Anttila, Pradeep Rajasekhar, Felicity C. Jackling, Marie Trussart, Michael J. G. Milevskiy, Xiaoyu Song, Mengbo Li, Charis E. Teh, Daniel H.D. Gray, Gordon K. Smyth, Yunshun Chen, Geoffrey J. Lindeman, Jane E. Visvader - Nature Cell Biology 2024 被引用: 14

  21. Benchmarking spatial transcriptomics technologies with the multi-sample SpatialBenchVisium dataset

    著者: Mei R. M. Du, Changqing Wang, Charity W. Law, Daniela Amann‐Zalcenstein, Casey J. A. Anttila, Ling Ling, Peter F. Hickey, Callum J. Sargeant, Yunshun Chen, Lisa J. Ioannidis, Pradeep Rajasekhar, Raymond K. H. Yip, Kelly L. Rogers, Diana S. Hansen, Rory Bowden, Matthew E. Ritchie - Genome biology 2025 被引用: 21

  22. Spotlight on 10x Visium: a multi-sample protocol comparison of spatial technologies

    著者: Mei R. M. Du, Changqing Wang, Charity W. Law, Daniela Amann‐Zalcenstein, Casey J. A. Anttila, Ling Ling, Peter F. Hickey, Callum J. Sargeant, Yunshun Chen, Lisa J. Ioannidis, Pradeep Rajasekhar, Raymond K. H. Yip, Kelly L. Rogers, Diana S. Hansen, Rory Bowden, Matthew E. Ritchie - 2024 被引用: 12

  23. Activation of stably silenced genes by recruitment of a synthetic de-methylating module

    著者: Wing Fuk Chan, Hannah D. Coughlan, Yunshun Chen, Christine R. Keenan, Gordon K. Smyth, Andrew C. Perkins, Timothy M. Johanson, Rhys S. Allan - Nature Communications 2022 被引用: 24

  24. In vivo genome‐editing screen identifies tumor suppressor genes that cooperate with Trp53 loss during mammary tumorigenesis

    著者: Luuk Heitink, James R. Whittle, François Vaillant, Bianca D. Capaldo, Johanna F. Dekkers, Caleb A. Dawson, Michael J. G. Milevskiy, Elliot Surgenor, Minhsuang Tsai, Huei‐Rong Chen, Michael Christie, Yunshun Chen, Gordon K. Smyth, Marco J. Herold, Andreas Strasser, Geoffrey J. Lindeman, Jane E. Visvader - Molecular Oncology 2022 被引用: 17