The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

著者: Houriiyah Tegally, James Emmanuel San, Matthew Cotten, Monika Moir, Bryan Tegomoh, Gerald Mboowa, Darren P. Martin, Cheryl Baxter, Arnold W. Lambisia, Amadou Diallo, Daniel G. Amoako, Moussa Moïse Diagne, Abay Sisay, Abdel‐Rahman N. Zekri, Abdou Salam Guèye, Abdoul Karim Sangaré, Abdoul–Salam Ouédraogo, Abdourahmane Sow, Abdualmoniem O. Musa, Abdul Karim Sesay, Abe G. Abias, Adam Elzagheid, Adamou Lagaré, Adedotun-Sulaiman Kemi, Aden Elmi Abar, Adeniji A. Johnson, Adeola Fowotade, Oluwapelumi O. Adeyemi, Adrienne Amuri-Aziza, Agnes Juru, Ahmed Kandeil, Ahmed Mostafa, Ahmed Rebaï, Ahmed A. Sayed, Kazeem Akano, Aladje Baldé, Alan Christoffels, Alexander J. Trotter, Allan Campbell, Alpha Kabinet Kéita, A. Koné, Amal Bouzid, Amal Souissi, Ambrose Agweyu, Amel Naguib, Ana Victoria Gutiérrez, Anatole Nkeshimana, Andrew J. Page, Anges Yadouléton, Anika Vinzé, Anise N. Happi, Anissa Chouikha, Arash Iranzadeh, Arisha Maharaj, Armel L. Batchi‐Bouyou, Arshad Ismail, Augustina Angelina Sylverken, Augustine Goba, Femi Ayoade, Ayotunde E. Sijuwola, Baba M, Babatunde Lawal Salako, Bamidele Soji Oderinde, Bankole Bolajoko, Bassirou Diarra, Belinda L. Herring, Benjamin Tsofa, Bernard Lekana-Douki, Bernard Mvula, Berthe‐Marie Njanpop‐Lafourcade, Blessing T. Marondera, Bouh Abdi Khaireh, Bourèma Kouriba, Bright Adu, Brigitte Pool, Bronwyn McInnis, Cara E. Brook, Carolyn Williamson, Cassien Nduwimana, Catherine Anscombe, Catherine Pratt, Cathrine Scheepers, Chantal Akoua‐Koffi, Charles N. Agoti, Chastel M. Mapanguy, Cheikh Loucoubar, Chika Onwuamah, Chikwe Ihekweazu, Christian Malaka, Christophe N. Peyrefitte, Chukwa Grace, Chukwuma Ewean Omoruyi, Clotaire Donatien Rafaï, Collins M. Morang’a, Cyril Erameh, Daniel Lule Bugembe, Daniel J. Bridges, Daniel Mukadi‐Bamuleka, Daniel J. Park, David A. Rasmussen, David Baker, D. James Nokes, Deogratius Ssemwanga, Derek Tshiabuila, Dominic S. Y. Amuzu, Dominique Goedhals, Donald S. Grant, Donwilliams O. Omuoyo, Dorcas Maruapula, Dorcas Wanjohi, Ebenezer Foster-Nyarko, Eddy Kinganda-Lusamaki, Edgar Simulundu, Edidah M. Ong’era, Edith Nkwembe Ngabana, Edward Okoth Abworo, Edward Otieno, Edwin Shumba, Edwine Barasa, El Bara Ahmed, Elhadi Abdalla Ahmed, Emmanuel Lokilo, Enatha Mukantwari, Eromon Philomena, Essia Belarbi, Etienne Simon‐Lorière, Etilé A. Anoh, Eusébio Manuel, Fabian H. Leendertz, Fahn Taweh, Wasfi Farès, Fatma Abdelmoula, Faustinos Tatenda Takawira, Fawzi Derrar, Fehintola V. Ajogbasile, Florette K. Treurnicht, Onikepe Folarin, Francine Ntoumi, Francisca Muyembe, Frank Edgard Zongo Ragomzingba, Fred Athanasius Dratibi, Fred-Akintunwa Iyanu, Gabriel K. Mbunsu, Gaëtan Thilliez, Gemma L. Kay, George O. Akpede, Gert U. van Zyl, Gordon A. Awandare, Grace Semabia Kpeli, Grit Schubert, Gugu Maphalala, Hafaliana Christian Ranaivoson, Hannah E. Omunakwe, Harris Onywera, Haruka Abe, Héla Karray, Hellen Nansumba, Henda Triki, Herve Albéric Adje Kadjo, Hesham A. Elgahzaly, Hlanai Gumbo, Hota Mathieu, Hugo Kavunga‐Membo, Ibtihel Smeti, Idowu B. Olawoye, Ifedayo Adetifa, Ikponmwosa Odia, Ilhem Boutiba Ben Boubaker, Iluoreh Ahmed Muhammad, Isaac Ssewanyana, Isatta Wurie, Iyaloo Konstantinus, Jacqueline Wemboo Afiwa Halatoko, James Ayei, Janaki Sonoo, Jean-Claude Makangara-Cigolo, Jean‐Jacques Muyembe Tamfum, Jean‐Michel Héraud, Jeffrey G. Shaffer, Jennifer Giandhari, Jennifer Musyoki, Jerome Nkurunziza, Jessica N. Uwanibe, Jinal N. Bhiman, Jiro Yasuda, Joana Morais, Jocelyn Kiconco, John Demby Sandi, John Huddleston, John Kofi Odoom, John Mwita Morobe, John O. Gyapong, John Kayiwa, Johnson Okolie, Joicymara S. Xavier, Jones Gyamfi, Joseph Francis Wamala, Joseph Humphrey Kofi Bonney, Joseph Nyandwi, Josie Everatt, Joweria Nakaseegu, Joyce M. Ngoi, Joyce Namulondo, Judith U. Oguzie, Julia C. Andeko, Julius J. Lutwama, Juma J. H. Mogga, Justin O’Grady, Katherine J. Siddle, Kathleen Victoir, Kayode T. Adeyemi, Kefentse A. Tumedi, Kevin Sanders Da Rosa Carvalho, Khadija Said Mohammed, Koussay Dellagi, Kunda Musonda, Kwabena Obeng Duedu, Lamia Fki‐Berrajah, Lavanya Singh, Lenora Kepler, Leon Biscornet, Leonardo de Oliveira Martins, Lucious Chabuka, Luicer A. Ingasia, Lul Deng Ojok, Lul Lojok Deng, Lynette Isabella Ochola‐Oyier, Lynn Tyers, Madisa Mine, Magalutcheemee Ramuth, Maha Mastouri, Mahmoud ElHefnawi, Maïmouna Mbanne, Maitshwarelo Matsheka, Malebogo Kebabonye, Mamadou Diop, Mambu Momoh, Maria da Luz Lima Mendonça, Marietjie Venter, Mariétou F Paye, Martin Faye, Martin M. Nyaga, Mathabo Mareka, Damaris Matoke-Muhia, Maureen W. Mburu, Maxmillian Mpina, Michael Owusu, Michael R. Wiley, Mirabeau Youtchou Tatfeng, Mitoha Ondo’o Ayekaba, Mohamed Abouelhoda, Mohamed Amine Beloufa, Mohamed G. Seadawy, Mohamed K. Khalifa, Mooko Marethabile Matobo, Mouhamed Kane, Mounérou Salou, Mphaphi B. Mbulawa, Mulenga Mwenda, Mushal Allam, My V. T. Phan, Nabil Abid, Nadine Rujeni, Nadir Abuzaid, Nália Ismael, Nancy Elguindy, Ndeye Marième Top, Ndongo Dia, Nédio Mabunda, Marvin Hsiao, Nelson Boricó Silochi, Ngiambudulu M. Francisco, Ngonda Saasa, Nicholas Bbosa, Nickson Murunga, Nicksy Gumede, Nicole Wolter, Nikita Sitharam, Nnaemeka Ndodo, Nnennaya Anthony Ajayi, Noël Tordo, Nokuzola Mbhele, Norosoa Harline Razanajatovo, Nosamiefan Iguosadolo, Nwando Mba, Ojide C. Kingsley, Okogbenin Sylvanus, Femi Oladiji, Moses Olubusuyi Adewumi, Testimony Olumade, Olusola Ogunsanya, Oluwatosin Fakayode, Onwe Emeka Ogah, Ope-Ewe Oludayo, Ousmane Faye, Pamela Smith-Lawrence, Pascale Ondoa, P Combe, Patricia Nabisubi, Patrick Semanda, Paul E. Oluniyi, Paulo Arnaldo, Peter K. Quashie, Peter O. Okokhere, Philip Bejon, Philippe Dussart, Phillip Armand Bester, Placide Mbala, Pontiano Kaleebu, Priscilla Abechi, Rabeh El‐Shesheny, R Joseph, Ramy K. Aziz, René Ghislain Essomba, Reuben Ayivor-Djanie, Richard Njouom, Richard Odame Phillips, Richmond Gorman, Robert A. Kingsley, Rosa Maria D. E. S. A. Neto Rodrigues, Rosemary Audu, Rosina Carr, Saba Gargouri, Saber Masmoudi, Sacha Bootsma, Safiétou Sankhe, Sahra Isse Mohamed, Saibu Femi, Salma Mhalla, Salome Hosch, Samar K. Kassim, Samar Metha, Sameh Trabelsi, Sara H. A. Agwa, Sarah Mwangi, Seydou Doumbia, Sheila Makiala‐Mandanda, Sherihane Aryeetey, Shymaa S. Ahmed, Sidi Mohamed Ahmed, Siham Elhamoumi, Sikhulile Moyo, Silvia Lutucuta, Simani Gaseitsiwe, Simbirie Jalloh, Soa Fy Andriamandimby, Sobajo Oguntope, Solène Grayo, Sonia Etenna Lekana-Douki, Sophie J. Prosolek, Soumeya Ouangraoua, Stephanie van Wyk, S. F. Schaffner, Stephen Kanyerezi, Steve Ahuka‐Mundeke, Steven Rudder, Sureshnee Pillay, Susan Nabadda, Sylvie Behillil, Sylvie L. Budiaki, Sylvie van der Werf, Tapfumanei Mashe, Thabo Mohale, Thanh Le-Viet, Thirumalaisamy P. Velavan, Tobias Schindler, Tongai Maponga, Trevor Bedford, Ugochukwu J. Anyaneji, Chinedu Ugwu, Upasana Ramphal, Uwem E. George, Vincent Enouf, Vishvanath Nene, Vivianne Gorova, Wael H. Roshdy, Wasim Abdul Karim, William Ampofo, Wolfgang Preiser, Wonderful T. Choga, Yahaya Ali Ahmed, Yajna Ramphal, Yaw Bediako, Yeshnee Naidoo, Yvan Butera, Zaydah R. de Laurent, Africa Pathogen Genomics Initiative (Africa PGI)‡, Ahmed E Ogwell Ouma, Anne von Gottberg, George Githinji, Matshidiso Moeti, Oyewale Tomori, Pardis C. Sabeti, Amadou A. Sall, Samuel O. Oyola, Yenew Kebede Tebeje, Sofonías K. Tessema, Túlio de Oliveira, Christian Happi, Richard Lessells, John N. Nkengasong, Eduan Wilkinson, Aaron Shibemba, Abasi Ene Obong, Abayomi Fadeyi, Abbad Anas, Abd Elazeez Shabaan, Abd Monaem Adel, Abd Moniem Ain Shoka, Waleed Mhmoud Abdelhamid, Abdelilah Laraqui, Abdelkader Laatiris, Abdelkrim Meziane Bellefquih, Faouzi Abdellah, F. Abdelmoulah, Abdelmounim Essabbar, Abderrahmane Bimouhen, Abderraouf Hilali, Ibrahim Abdo, Abdou Padane, Abdoul Karim Sangaré, Abdoul Karim Soumah, Abdoulaye Djimdé, Abdoulaye Touré, Abdoulie Kanteh, Abdulla Bashein, Abdullah Salama, Abe Lojuan, Abebe Genetu Bayih, Abel Abera Negash, Abel Lissom, Nabil Abid, Abla Ahouefa Konou, Abo Shama, O. Abosede, Sherif Abouelnaga, Abraham Ali, Abraham K. Anang, Abraham Tesfaye, Adam K. Khan, Adamu Tayachew, Adane Mihret, Adba Alfatih AlEmam, Adede Hawi, A. Adesegun, Adey Feleke Desta, Adib Ghassan, Adjaratou Traoré, B. A. Adjiratou Aissatou, Adodo Yao Sadji, Adrian Egli, Adriano Mendes, Adugna Abera, Adul Candé, Afaf Alaoui, Pedro Afonso, Bright Agbodzi, Amr Ageez, Ahidjo Ayouba, Ahlam Alarif, Ahmed E. Kayed, Ahmed El Taweel, Ahmed Elsayed, Ahmed F. Gad, Ahmed Fakhfakh, Ahmed Kandeil, Muhammad I. Ahmed, Ahmed Mostafa, Ola Ahmed, Ahmed Reggad, Ahmed Taha, Vida Ahyong, Aïcha Bensalem, Aida Sivro, Aïssam Hachid, F. Ajili, Fehintola V. Ajogbasile, Akim A. Adegnika, Akoele Siliadin, Akwii Patience Natasha, Aladje Balde, Alan Lemtudo, Alaoui Sanaa-amine, A. M. Alaruusi, Alassane Ouro‐médéli, Albert Nyunja, Alberto Rizzo, Alemseged Abdissa, Alemu Tike Debela, Alessandro Mancon, Alessandro Marcello, Alexander Goredema, Alexander L. Greninger, Alexis Ndjolo, Alexis Niyomwungere, Alfredo Mari, Alfredo Mayor, Mohamed A. Ali, Alimuddin Zumla, Alia Ben Kahla, Alia Grad, Alice Kabanda, Alie Tia, Alimou Camara, Alimuddin Zumla, Allé Baba Dieng, Almoustapha Issiaka Maïga, Amadou Alpha Sall, Amadou Daou, Amal Naguib, Amal Souiri, Amal Zouaki, Ghita Amalou, Amandine Mveang-Nzoghe, Amariane Koné, Amariane Koné, Ambroise D. Ahouidi, Amel Benyahia, Amel Nagiub, Khaled Amer, Améyo M. Dorkenoo, Amina Barkat, Aminata Dia, Aminata Mbaye, Aminata Mboup, Aminata Sileymane Thiam, Amine Idriss Lahlou, Amira Suliaman Wadi, Amivi Ehlan, Amujal Marion, Amuri Aziza, Amy Strydom, Anass Abbad, Anatole Nkeshimana, Andargachew Mulu, Anderrahmane Maaroufi, Andrea E. Luquette, Andreas Shiningavamwe, Moreira-Soto Andres, Andrew S. Azman, Andrew J. Bennett, Andrew Tarupiwa, Latifa Anga, Ange Badjo, Angel Angelov, Angela Brisebarre, Angela M. Detweiler, Angoune Ndong, Anja Werno, Anna Julienne Selbe Ndiaye, Anna‐Lena Sander, B. Annajr, Annamaria D’Aprile, Anne van der Linden, Annemiek van der Eijk, Annette Erhart, Anou M. Somboro, Anoumou Dagnran, Anthony Ahumibe, Anthony Levasseur, Antje van der Linden, Antoine Dara, Anu Jegede-Williams, Mahjoub Aouni, Augustina Arjarquah, Arlene Uwituze, Arlo Upton, Armel Poda, Arsène Somé, Arsène Zongo, Arsenia Massinga, K.M. Asare, Ashaba Fred Katabazi, Asma Ferjani, Assane Dieng, Astou Gaye-Gaye, Nick Chenis Atiga, Atsbeha Gebreegziabxier Weldemariam, Augustina Arjaquah, A. Auld, Awa Ba-Diallo, Awatef ElMoussi, Sena Awunyo, Aya Mohamed, Ayman A. Farghaly, B. Ayo-Ale, F. Ayoade, Ayôla Akim Adégnika, Ayong More, Ayorinde Babatunde James, Nawfel Azami, Azaria Diergaardt, Azuka Patrick Okwuraiwe, Babafemi Taiwo, S. B. Baboo, B. S. Bahadoor, A.A. Bahnassy, Bakary Sanyang, Usama Bakry, Bamba Fatoumata Touré, Bamidele Iwalokun, R. Banda, S. Bane, Bankole A. Johnson, Barada Cisse, Barbra Murwira, Bas B. Oude Munnink, Armel L. Batchi‐Bouyou, Rahul Batra, Beatrice Dhaala, Belayachi Lamiae, A.B. Belkhir, Ikhlas Ben Ayed, Ben Morton, Ben Moussa, Ben Wulf, Bénédicte Ndeboko, Rachid Benhida, Benjamiin B. Lindsey, Benjamin H. Foulkes, Benjamin Hounkpatin, Benjamin Sélekon, M. Bensaid, Bernard Mpairwe, Bernard S. Bagaya, Bert Vanmechelen, Bertrand Lell, Beth Mutai, Bethlehem Adnew, Beuty Makamure, Barbara Bighignoli, Birahim Piere Ndiaye, Bishwo N. Adhikari, S.M. Bitrou, Blaise MBoringong Akenji, Bode Shobayo, Boitumelo Zuze, Bonifacio Manguire Nlavo, Bouchra Belfquih, Bouchra Boujemla, Bouna Yatassaye, Aymane Bouzidi, Brian Andika, Bright K. Yemi, Bronwyn Kleinhans, Bruna P. G. V. Galvão, Bubacar Delgado Pinto Embaló, Bulelani Manene, Butoyi Pascal, Camille Capel, Campbell Anu, Carine Tchibozo, Carla Madeira, Carlos Cortés, Élisabeth Carniel, Carol Kifude, Carolle Yanique Tayimetha, Catherine Arnold, Catherine Okoi, Cecilia Waruhiu, Célestin Godwe, Celestina Obiekea, Céline Nguefeu Nkenfou, Lucious Chabuka, Chakib Nejjari, Herman M. Chambaro, Duncan Chanda, Katendi Changula, Charifa Drissi Touzani, Charles Kayuki, Charles Nyagupe, Charles Ssuuna, charoute hicham, Chaselynn Watters, H. Chawech, Cheikh Sokhna, Mohamed Chenaoui, Chiamaka Nwuba, C. Chilufya, Chimaobi Chukwu, Chinyere Anyika, Peter J. Chipimo, Simbarashe Chitanga, M. Chitenje, M. J. Chiwaula, Taha Chouati, Chris Mansell, Christelle Butel, Christian Devaux, Christian Drosten, Christian Ranaivoson, Christian Utpatel, Christophe Malabat, A. Chtourou, Grace C. Chukwu, Claudia Daubenberger, Clement G. Kakai, Clement Masakwe, Clotaire Donatien Rafaï, Collins Ambe Chenwi, Collins M. Misita, Collins Muli, Corine H. GeurtsvanKessel, Corinne Maufrais, Coulibaly Mbegnan, Mark Crawford, Cristina M. Tato, Cyrus Yiaba, N. D'Amore, Dabiri Damilari, Dalia Ibrahim Ramadan, D. Damena, Daniel O. Ouso, Daniela Pisanelli, Danilo Licastro, D. A. Hammer, David F. Nieuwenhuijse, David Patrick Kateete, David A. Wilkinson, Davy Leger Mouangala, Dawit Hailu Alemayehu, raghad Dawood, R. De Sanctis, Deborah N. A. Mettle, Demba Koita, Dennis Kenyi Lodiongo, Dennis Laryea, Dennis Nelson Wandera, Dereje Leta, Dersi Noureddine, Désiré Takou, Dessalegn Abeje Tefera, Dhwani Batra, Ndongo Dia, Aya A. Diab, Diabou Diagne, Diane A. Mabika, Diané Bamourou, Dianke Samaté, Bassirou Diarra, Didier Raoult, Dieudonné Mutangana, Dineo Emang Tshiamo. Gape Nyepetsi, Diosdado Odjama Nseng Ada, Djimabi Salah, Donatella Cedola, Doris Harding, Dorothy Yeboah‐Manu, Dossou Ange, Dowbiss Meta Djomsi, Dragana Drinković, Christopher K. Draper, Dumbuya Foday Sahr, Ebenezer Odewale, Eclou Sedjro, Edang-Minko Armand, Edgar Kigozi, Edith Koskei, Edith Nkwembe, Edmilson Ferreira de Oliveira-Filho, Edmira Maria da Costa, Edward Kiritu, Efrem S. Lim, Egon A. Ozer, Beverly Egyir, Ehab Abdelkader Abuelenein, Eitel Mpoudi Ngole, El Aliani Aissam, El Ansari Fatima Zahra, El Hamouchi Adil, El Oualid Abdelmjid, H. El-Shaqnqery, Mariam G. Elzayat, Elamin Abualas, Hicham Elannaz, Aida Elargoubi, Eleni Kidane, Elham Rizgalla, M.M. Elhoseny, F.W. Elhosieny, Élisabeth Carniel, Elizabeth Nyakarungu, S.M. Elkhateeb, Elmostafa Benaissa, Elmostafa El Fahime, M. Elouanass, Maha Hamdy Elsissy, Elvyre Mbongo-Nkama, Elwaleed M. Elamin Sara A.I Latif, Emame Edu, Emanuele Orsini, Emilio Skarwan, Emily K. Stefanov, Emmanuel Nasinghe, Emmanuel Nepolo, Emmanuel Ogunbayo, Emmanuelle Münger, Emmanuelle Permal, Emna Gaïes, H. Ennibi, Khalid Ennibi, Erasmus Nikoi Kotey, Erasmus Smit, Eric Agola Lelo, Eric Adu, Éric Delaporte, Eric Katagirya, Eric Kezakarayagwa, Eric M. Muthanje, Erica Luis Maria Magalhães, Ernest Asiedu, Esemu Livo, Espérance Umumararungu, Esther Chitechi, Esther Omuseni, Etoundi Mballa Georges Alain, Evelyn Quansah, Evelyn Yayra Bonney, Moushira Hosny Ezzelarab, Faatu Cassama, Fabien Roch Niama, Fabio Arena, Giovanni Faggioni, Elizabeth Fahsbender, Faith Sigei, Faouzi Abdellah, Jouali Farah, H. Farawyla, Farida Hilali, Fatima Chgouri, Fatima El Falaki, Fatima Zahra El ansari, Fatma Ebied, Fatna Bssaibis, Fattah Al Onifade, Ousmane Faye, Fayez Ahmed Khardine, Fayez Ahmed Khardine, A.V. Fedorov, Fekadu Alemu, Fekkak Jamal, Fengming Sun, Fetouma Doudou, A.E. Fikry, Silvia Fillo, Fiorenza Bracchitta, Firmin Kaboré, Lamia Fki‐Berrajah, Flora Donati, Florence Fenollar, Foday Sahr Samuel Sorie, O. Folarino, Francine Folorunsho, Francisca Kabatesi, Francisco Muyembe-Mawete, François Malagon, Franklin Kiemdé, Franklyn Egbe Asiedu-Bekoe, Frédéric Nkongho, Frederick Lemoine, Tei-Maya, Renato Hajenius Aché de Freitas, Terence Fuh-Neba, Imed Gaâloul, Gabriel Kabamba, Gadissa Gutema, Emna Gaïes, Galadima Gadzama, Galal Mahmoud, Garba Ouangole, Saba Gargouri, Robert F. Garry, Gary McAuliffe, Gathii Kimita, Gédéon Prince Manouana, Tesfaye Gelanew, George Awinda, George B. Kyei, George Michuki, Georgelin Nguema Ondo, Gerhard van Rooyen, Gert Marais, Getachew Abichu, Getachew Tesfaye Beyene, Getachew Tollera, Getnet Hailu, Ghamaz Hamza, Ghazi Kayali, Ghizlane El Amin, Gibson Mhlanga, Gilbert Kibet, Gildas Hounkanrin, Francesco Giordani, Gizaw Teka, Godfrey Masete, Robert Goldstone, C. Gomaa, Gomaa Mokhtar, Gora Lô, BernadettI Gosnell, Anne von Gottberg, Grace Angong Belournou, Grace Oni, Grace E. Vincent, Gregory Wani, Guedi Ali Barreh, Guillermo García, Guohong Deng, N. P. Guseva, Guy Paterne Malonga Mbembo, Guy Stéphane Padzys, S. Gwayi, Habiba Ben Romdhane, Habiba Naïja, Haby Diallo, A. Hadad, Mohammed M. Hafez, Hafsia Ladhari, Hagar Elshora, Hailu Dadi, Hajjaji Mohammed, Hakima Kabbaj, Hala Hafez, A. Halafawy, Halidou Tinto, Halimatou Diop‐Ndiaye, Hamadi Assane, Tooba Hamdani, Mona S. Hamdy, Hamidah Namagembe, Mahmoud Hammad, A. Hammami, Hamza Gharmaz, Hana Sofia Andersson, Hanae Dakka, Hanen El Jebari, Hany K. Soliman, Harmak Houda, Ruth Harvey, Hasnae Benkirane, Hassan Aguenaou, Hassan Ihazmad, Reem Hassan, Wael A. Hassan, Hatem Ahmed, Heitzer Sogodogo, Helena M. B. Seth-Smith, Helisoa Razafimanjato, Hellen Koka, Mouhssine Hemlali, Henry Mwebesa, Hermes Pérez, Herve Christian Paho Tchoudjin, Hicham Elannaz, Hicham Oumzil, Hilda Opoku Frempong, Hinson Fidelia, Hoda Ezz Elarab, Hong Xie, Houda Benrahma, Housna Arrouchi, Houssem Guedouar, Hu Luo, Hubert Bassène, Huiqing Si, Ian Goodfellow, Ibrahima Guindo, Ibrahima Halilou, Idil Salah Abdillahi, Idriss-Amine Lahlou, Idrissa Diawara, Ifunanya Egoh, Fehintola Ige, A.A. Iknane, Ikram Bnouyahia, Ikram Omar Osman, Ilhem Boutiba Ben Boubaker, Iman Abdillahi Hassan, Iman Foda, Imane Smyej, Imen Kacem, Imen Mdini, Imen Mkada, Inácio Mandomando, Iñaki Comas, Ines Mdini, L. Inglês, Innocent Mudau, Ireoluwa Yinka Joel, Irina Chestakova, Irving Cancino, Isaac Phiri, Ismaël Pierrick Mikelet Boussoukou, Arshad Ismail, Israel Osei-Wusu, Issaka Maman, Ivan Barilar, Ivy Asantewaa Asante, Izuwayo Gerard, Jaâfar Heikel, Jacob Souopgui, Jacques Marx, Deena Jalal, Jalal Nourlil, Jalil El Atar, Jalila Ben Khelil, Jalila Rahoui, Fekkak Jamal, James Mutisya, James E. Ussher, Jan Felix Exler, Jane MaCauley, Janet Majanja, N. Jannoo, Jarra Manneh, Jasmin Scharnberg, Jasmin Schlotterbeck, Jasper Chimedza, Jawad Bouzid, Jean B. Niyibigira, Jean Claude Djontu, Jean Maritz, Jean-Claude Makangara-Cigolo, Jean-louis Monemou, Jeanne d’Arc Umuringa, Jérémy Delerce, Jerome Ndaruhutse, Jerome Nkurunziza, Jesse Addo Asamoah, Jill Sherwood, Jing Wang, Joan Marti-Carerras, Joe Kimanthi Mutungi, Joe Kimanthi Mutungi, Joël Fleury Djoba Siawaya, Joel Koivogui, Joep de Ligt, John Njuguna, John Rumunu, John Tembo, John Waitumbi, Johnson Adekunle Adeniji, Jonathan Rigby, Jorn Hellemans, Joseph Fokam, Joseph L. DeRisi, Joseph Makhema, Joseph Mugisha, Joseph Ojonugwa Shaibu, Joseph Oliver-Commey, Josephine Bwogi, Josh H. Freeman, Josiah Ayoola Isong, Josphat Nyataya, Joy Ayoola, Joyce Appiah-Kubi, Judd F. Hultquist, Jude Gédéon, Judith Sokei, Julia Howard, Julia Schneider, Julian Campbell, Juliet Elvy, A.B. Jumaa, Justin Lee, Justin Lessler, Justin O’Grady, Kaba Kourouma, Kaïs Ghedira, K. Kalantar, Kamela Mahlakwane, Sophien Kamoun, Kangwa Mulonga, P.C. Kapata, Fred Kapaya, M. Kapin'a, H. Karray Hakim, Watipaso Kasambara, Yassine Kasmi, Kassahun Tesfaye, Kathleen Subramoney, A.D. Katyshev, Nkomba Kayeyi, Kayla G. Barnes, Kayla Delaney, E.V. Kazorina, Kedumetse Seru, Sakoba Keita, Keith Durkin, Keith R. Jerome, Keke K. René, Kena A. Swanson, Kenneth Kudzai Maeka, Keren Attiku, Kevin Sanders, Kevine Zang Ella, Keyru Tuki, Khabab A. Elhag, Khadim Gueye, Khaled Amer, Khalid Ennibi Mostafa, N. Kharat, Z. Khumalo, Kilian Stoecker, Lynn J. Kim, Kimberly A. Bishop‐Lilly, John Kimotho, Kitane Driss Lahlou, Kofi Bonney, Kokou Tegueni, Kolawole Wasiu Wahab, E.V. Kolomoets, Komal Jain, Kominist Asmamaw, Kossi Komlan, Kondwani Jambo, Kouadio T. Yao, Kouriba Dürr, Kra Ouffoué, Ya.M. Krasnov, Krishna Kumar Kandaswamy, Kristian G. Andersen, A.A. Kritsky, Kumbelembe David, Kutlo Macheke, V.V. Kutyrev, S. Kwenda, Kwitaka Maluzi, Kwok Lee, Kyle A. Long, Kyra H. Grantz, Lacy M. Simons, Laetitia Serrano, Lagos State Government, Laila Elsawy, Laïla Sbabou, Lallepak Lamboni, LaRinda A. Holland, Lasata Shrestha, Lassana Sangaré, Latifa Anga, Lauren Jelly, Laurien Hoornaert, Le Thi Kieu Linh, Legodile Kooepile, Leigh-Anne MC Intyre, Léon Mutesa, Leona Chika Okoli, Leopold Ouédraogo, Lesego Kuate-Lere, Dereje Leta, A. Letaief, Gideon Liboro, Lilian Kanjau, Lifeng Lin, Linda Boatemaa, Linda Houhamdi, Lipkin W. Ian, Florigio Lista, M.M. Liwewe, Lloyd Mulenga, Logan J. Voegtly, Loide Ndelimona Ndapandula Shipingana, Loris Micelli, Lorreta Kwasah, Loubna Allam, Louise Lefrançois, Loukman Salma, Lucas Amenga–Etego, Ludivine Brechar, Ludovic Mewono, Luis A. Estrella, Lusia Mhuulu, Lwanga Newton, Markus Ulrich, Milton T. Mogotsi, Maaroufi Abderrahmane, W. Mad, W.Y. Madi, Madlen Stange, Sameh Magdeldin, Maher Kharrat, Boitshoko Mahlangu, Mahmoud Shehata, N. 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Mathabo, Mathew D. Parker, Mathias C. Walter, Harsh Kumar Mathur, Matt Blakiston, Matt Storey, Matthew Bates, Matthew B. Rogers, Matthias Pauthner, Maud Vanpeene, Maurizio Margaglione, Max Bloomfield, May AbdelFattah, May S. Soliman, Mbengué Fall, K. Mdlalose, Meei‐Li Huang, Sanjay R. Mehta, Mélanie Albert, Melchior Aïssi, Méline Bizard, Merabet Mouad, Meriem Laamarti, Messanh Douffan, Salma Mhalla, Michael Addidle, Michael Marks, Michael Nagel, Michael V. Deschenes, Micheala Davids, Michelle Balm, Michelle J. Lin, Michelle Tan, A. Mihrete, MO Buhari, Milanca Agostinho Cá, Mildred Adusei‐Poku, Milkah Mwangi, Mina Nabil Kamel, Josy Miranda, Mireille Prince‐David, Miriam Eshun, Misaki Wayengera, Mitali Mishra, Mjid Eloualid, Mly Abdelaziz Elalaoui, Anele Mnguni, F. Mnyameni, Mogomotsi Matshaba, Thabo Mohale, Mohamed Abdel‐Salam Elgohary, Mohamed A. Ali, Mohamed Ben Moussa, Mohamed Chenaoui, Mohamed El Sayes, Mohamed El-Hadidi, Mohamed G. 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Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing in Africa over the past year has led to a major increase in the number of sequences that have been generated and used to track the pandemic on the continent, a number that now exceeds 100,000 genomes. Our results show an increase in the number of African countries that are able to sequence domestically and highlight that local sequencing enables faster turnaround times and more-regular routine surveillance. Despite limitations of low testing proportions, findings from this genomic surveillance study underscore the heterogeneous nature of the pandemic and illuminate the distinct dispersal dynamics of variants of concern-particularly Alpha, Beta, Delta, and Omicron-on the continent. Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve while the continent faces many emerging and reemerging infectious disease threats. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century.