Arabidopsis thaliana Squalene Epoxidase 1 Is Essential for Root and Seed Development
Squalene epoxidase converts squalene into oxidosqualene, the precursor of all known angiosperm cyclic triterpenoids, which include membrane sterols, brassinosteroid phytohormones, and non-steroidal triterpenoids. In this work, we have identified six putative Arabidopsis squalene epoxidase (SQE) enzymes and used heterologous expression in yeast to demonstrate that three of these enzymes, SQE1, SQE2, and SQE3, can epoxidize squalene. We isolated and characterized Arabidopsis sqe1 mutants and discovered severe developmental defects, including reduced root and hypocotyl elongation. Adult sqe1–3 and sqe1–4 plants have diminished stature and produce inviable seeds. The sqe1–3 mutant accumulates squalene, consistent with a block in the triterpenoid biosynthetic pathway. Therefore, SQE1 function is necessary for normal plant development, and the five SQE-like genes remaining in this mutant are not fully redundant with SQE1. Squalene epoxidase converts squalene into oxidosqualene, the precursor of all known angiosperm cyclic triterpenoids, which include membrane sterols, brassinosteroid phytohormones, and non-steroidal triterpenoids. In this work, we have identified six putative Arabidopsis squalene epoxidase (SQE) enzymes and used heterologous expression in yeast to demonstrate that three of these enzymes, SQE1, SQE2, and SQE3, can epoxidize squalene. We isolated and characterized Arabidopsis sqe1 mutants and discovered severe developmental defects, including reduced root and hypocotyl elongation. Adult sqe1–3 and sqe1–4 plants have diminished stature and produce inviable seeds. The sqe1–3 mutant accumulates squalene, consistent with a block in the triterpenoid biosynthetic pathway. Therefore, SQE1 function is necessary for normal plant development, and the five SQE-like genes remaining in this mutant are not fully redundant with SQE1. Plants are estimated to produce more than 500,000 secondary metabolites (1Hadacek F. CRC Crit. Rev. Plant Sci. 2002; 21: 273-322Crossref Scopus (174) Google Scholar). These compounds have many functions, including attracting pollinators, communicating with neighboring plants, and defending against pathogens and herbivores (2Swain T. Annu. Rev. Plant Physiol. 1977; 28: 479-501Crossref Google Scholar, 3Pichersky E. Gershenzon J. Curr. Opin. Plant Biol. 2002; 5: 237-243Crossref PubMed Scopus (818) Google Scholar). The importance of secondary metabolites is highlighted by the extensive resources that plants invest in producing these compounds. Although once thought to be metabolically simple, more than 170 secondary metabolites have been identified in Arabidopsis thaliana (reviewed in Ref. 4D'Auria J.C. Gershenzon J. Curr. Opin. Plant Biol. 2005; 8: 308-316Crossref PubMed Scopus (206) Google Scholar). Triterpenoids are the 30-carbon subset of terpenoids, the largest class of secondary metabolites. Triterpenoid biosynthesis is diagramed in Fig. 1. Isopentenyl diphosphate and dimethylallyl diphosphate are synthesized from mevalonate and oligomerized to farnesyl diphosphate by farnesyl diphosphate synthase (FPS). 5The abbreviations used are: FPS, farnesyl diphosphate synthase; BR, brassinosteroid; cDNA, complementary DNA; GC-MS, gas chromatography-mass spectrometry; PN, plant nutrient; RT, reverse transcription; SQE, squalene epoxidase; T-DNA, transfer-DNA; TUB, tubulin. 5The abbreviations used are: FPS, farnesyl diphosphate synthase; BR, brassinosteroid; cDNA, complementary DNA; GC-MS, gas chromatography-mass spectrometry; PN, plant nutrient; RT, reverse transcription; SQE, squalene epoxidase; T-DNA, transfer-DNA; TUB, tubulin. Farnesyl diphosphate is dimerized to squalene by squalene synthase. Squalene epoxidase (SQE)-mediated oxidation then produces oxidosqualene, which triterpene synthases cyclize to >80 triterpene skeletons (5Xu R. Fazio G.C. Matsuda S.P.T. Phytochemistry. 2004; 65: 261-291Crossref PubMed Scopus (435) Google Scholar, 6Phillips D.R. Rasbery J.M. Bartel B. Matsuda S.P.T. Curr. Opin. Plant Biol. 2006; 9: 305-314Crossref PubMed Scopus (292) Google Scholar). Further metabolism of these compounds produces membrane sterols, brassinosteroid phytohormones, saponins, other defense compounds, cuticular waxes, and numerous triterpenoids that have not been functionally characterized. The yeasts and mammals that have been investigated each encode a single squalene epoxidase. In contrast, several plants have multiple genes predicted to encode squalene epoxidases, a diversity suggesting that this step may be subject to additional or unique regulation in plants. Two Medicago truncatula SQE enzymes have been biochemically characterized (7Suzuki H. Achnine L. Xu R. Matsuda S.P.T. Dixon R.A. Plant J. 2002; 32: 1033-1048Crossref PubMed Scopus (235) Google Scholar). The Brassica napus (8Schafer U.A. Reed D.W. Hunter D.G. Yao K. Weninger A.M. Tsang E.W. Reaney M.J. MacKenzie S.L. Covello P.S. Plant Mol. Biol. 1999; 39: 721-728Crossref PubMed Scopus (22) Google Scholar), Populus trichocarpa, and Oryza sativa genomes each have multiple predicted SQE enzymes. Despite the likely importance of SQE to plant growth and development, no plant mutants with defects in these enzymes have been reported. In this work, we heterologously expressed the six Arabidopsis putative SQE enzymes in Saccharomyces cerevisiae lacking squalene epoxidase to determine which have squalene epoxidase activity. We isolated Arabidopsis sqe1 loss-of-function mutants and found that these mutants display severe developmental defects and accumulate squalene. Our results demonstrate that SQE1 is particularly important for oxidosqualene production in the roots and reproductive tissues of Arabidopsis. Chemicals—Bis(trimethylsilyl)trifluoroacetamide, pyridine, and potassium hydroxide were from Aldrich Chemical Company (Milwaukee, WI). Lovastatin (mevinolin), squalene, epibrassinolide, hemin, ergosterol, raffinose, TRI Reagent, and cholesterol ethyl ether were from Sigma-Aldrich (St. Louis, MO). Methanol, methyl t-butyl ether, dichloromethane, and hexane (OmniSolv grade) were from EM Science (Gibbstown, NJ). Ammonium glufosinate (Basta) was from Sigma-Aldrich and Crescent Chemical (Augsburg, Germany). Sitosterol was obtained from wild-type (Col-0, Columbia) Arabidopsis plant extracts by high pressure liquid chromatography purification and was identified by NMR and GC-MS. Oxidosqualene was synthesized according to previously published procedures (9Nadeau R.G. Hanzlik R.P. Methods Enzymol. 1968; 15: 346-351Crossref Scopus (63) Google Scholar). Yeast Expression—SQE1 (At1g58440), SQE3 (At4g37760), SQE5 (At5g24150), and SQE6 (At5g24160) were PCR-amplified from an Arabidopsis cDNA library in the pSPORT vector (10LeClere S. Bartel B. Plant Mol. Biol. 2001; 46: 695-703Crossref PubMed Scopus (70) Google Scholar). The SQE2 (At2g22830) cDNA was reverse-transcribed and PCR-amplified from Arabidopsis mRNA using a RETRO-script kit (Ambion). A full-length SQE4 (At5g24140) cDNA derived from a λ-PRL2 cDNA library (11Newman T. de Bruijn F.J. Green P. Keegstra K. Kende H. McIntosh L. Ohlrogge J. Raikhel N. Somerville S. Thomashow M. Retzel E. Somerville C. Plant Physiol. 1994; 106: 1241-1255Crossref PubMed Scopus (558) Google Scholar) was obtained from the Arabidopsis Biological Resource Center (clone 129F12T7). The Arabidopsis cDNAs and the yeast ERG1 coding sequence were subcloned into the galactose-inducible yeast expression vector pRS426Gal (12Hart E.A. Hua L. Darr L.B. Wilson W.K. Pang J. Matsuda S.P.T. J. Am. Chem. Soc. 1999; 121: 9887-9888Crossref Scopus (94) Google Scholar) cut with SalI and NotI or SacII and NotI (for SQE3). Inserts were sequenced to ensure that cDNAs were free of PCR-derived errors. S. cerevisiae strains were RXY6 (MATa erg7::HIS3 erg1::Kan-MX4 hem1::TRP1 ura3-52 trp1-Δ63 leu2–3,112 his3-Δ200 ade2 Gal+) (13Fazio G.C. Xu R. Matsuda S.P.T. J. Am. Chem. Soc. 2004; 126: 5678-5679Crossref PubMed Scopus (72) Google Scholar) and RXY6.2, an oxidosqualene auxotroph created by transforming RXY6 with pSM61.21, a LEU2-integrating plasmid carrying ScERG7 driven from the GAL1 promoter (14Corey E.J. Matsuda S.P.T. Baker C.H. Ting A.Y. Cheng H. Biochem. Biophys. Res. Commun. 1996; 219: 327-331Crossref PubMed Scopus (69) Google Scholar). The hem1 lesion in this strain allows the import of sterol under aerobic conditions (15Gollub E.G. Liu K. Dayan J. Adlersberg M. Sprinson D.B. J. Biol. Chem. 1977; 252: 2846-2854Abstract Full Text PDF PubMed Google Scholar). Transformants were selected for uracil prototrophy at 30 °C on synthetic medium lacking uracil (16Ausubel F.M. Brent R. Kingston R.E. Moore D.D. Seidman J.G. Smith J.A. Struhl K. Current Protocols in Molecular Biology. Wiley-Interscience, New York1999: 13.0.1-13.13.7Google Scholar) and with hemin, ergosterol, and and with were for prototrophy by growth on synthetic medium lacking uracil and with raffinose, hemin, and RXY6 were for oxidosqualene by in synthetic medium lacking uracil and with raffinose, hemin, and were by in of and by with Squalene and oxidosqualene in the extracts were by chromatography in ether and with from (MATa erg7::HIS3 hem1::TRP1 leu2–3,112 his3-Δ200 ade2 Gal+) (14Corey E.J. Matsuda S.P.T. Baker C.H. Ting A.Y. Cheng H. Biochem. Biophys. Res. Commun. 1996; 219: 327-331Crossref PubMed Scopus (69) Google Scholar) and from with or were for oxidosqualene production using GC-MS. were by for at 30 °C in of synthetic medium lacking uracil (16Ausubel F.M. Brent R. 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Scopus Google Scholar) with to and with under at °C were to and under at were from medium to liquid were the liquid by roots a in a of the of the hypocotyl from an were in the for to the at °C for five additional were and were to medium for an additional in the of was used to determine the or of each root from an were on medium at °C for were and of was used to determine the of each and and and from and sqe1–3 were for was isolated using TRI according to the with reverse used a and of the cDNA was using the sqe1–3 the of the and SQE1 of the and SQE2, and SQE3, and and SQE4 and and and and sqe1–3 SQE1, and SQE5 cDNAs were from the using SalI and NotI and subcloned into the (10LeClere S. Bartel B. Plant Mol. Biol. 2001; 46: 695-703Crossref PubMed Scopus (70) Google Scholar) vector cut with and were into C. J. Mol. Scopus Google Scholar), which was used to plants using the Plant J. PubMed Google Scholar). Transformants were selected on medium with mutants were identified in the or using and for the were selected by the of glufosinate in the and were using a Plant and tissues from sqe1–3 and on medium were for these plants were selected from the of a by the root at were selected from plants, and for and were selected from plants. from or and wild-type plants was used for plant and root for and root for and root for and root for and root for and root for was with for were under a with and extracts in were of and of root for of and of root for In extracts were of and of root for of and of root for In extracts were of and of root for of and of root for of the extracts of of was for of cholesterol ethyl ether to Sitosterol was in this for an to for purification for squalene the of the extracts in of of was to in for for These were at °C under for The were then to to and with methyl t-butyl ether for for and with the was of the extracts were using of of with of cholesterol ethyl ether to purification was on from the squalene was and more was The remaining of the extracts were in of and of with were with of and methyl t-butyl ether in and methyl t-butyl ether, and all were to and squalene, and and ether were by of with of at by for for and were on an to an with a 30 were at °C in was at were with at and a °C a of Two were In the the was at °C for at to by an at to and then at °C for at for squalene, at for cholesterol ethyl ether, and at for The used an of °C at for squalene, at for cholesterol ethyl ether, and at for were identified by and with of of squalene and were by to the cholesterol ethyl ether, on Arabidopsis Squalene putative squalene epoxidase genes were identified in the Arabidopsis using a E.W. 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Phytochemistry. 2004; 65: 261-291Crossref PubMed Scopus (435) Google Scholar). the characterized Arabidopsis oxidosqualene all can oxidosqualene a several of these enzymes are oxidosqualene to a of triterpene skeletons with D.R. Rasbery J.M. Bartel B. Matsuda S.P.T. Curr. Opin. Plant Biol. 2006; 9: 305-314Crossref PubMed Scopus (292) Google Scholar). In to the diversity by the oxidosqualene the of six SQE in Arabidopsis that squalene may an additional in triterpenoid The three that to function in yeast A and are and may have and SQE6 are more to Brassica SQE enzymes than to Arabidopsis SQE1, SQE2, SQE3, and putative SQE enzymes from other plants expression of SQE4 and SQE5 to the Arabidopsis sqe1–3 mutant not or the yeast mutant A and consistent with the that SQE4 and SQE5 the may have triterpenoids not an oxidosqualene and may be from squalene M. H. Scopus Google Scholar, H. J. Scopus Google Scholar). be to the and of of the of the that and of genes in function in plant defense Plant Physiol. 2005; PubMed Scopus Google Scholar, R. Plant 2004; PubMed Scopus Google Scholar). SQE in the plant may a for and Triterpenoid biosynthetic mutants have severe defects, the importance of an triterpenoid biosynthetic for plant We have that three of the six Arabidopsis SQE are squalene and that SQE1 is for plant sqe1 mutants have defects and to produce seeds. In sqe1 mutants accumulate squalene, suggesting that triterpenoid biosynthesis is the Arabidopsis SQE that to the Arabidopsis sqe1 mutant to the yeast consistent with the that a subset of Arabidopsis SQE enzymes may have unique Further and into the of the of SQE enzymes in plants.
