A communal catalogue reveals Earth’s multiscale microbial diversity

著者: Luke Thompson, Jon G. Sanders, Daniel McDonald, Amnon Amir, Joshua Ladau, Kenneth J. Locey, Robert J. Prill, Anupriya Tripathi, Sean M. Gibbons, Gail Ackermann, José A. Navas-Molina, Stefan Janssen, Evguenia Kopylova, Yoshiki Vázquez‐Baeza, Antonio González, James T. Morton, Siavash Mirarab, Zhenjiang Zech Xu, Lingjing Jiang, Mohamed Fauzi Haroon, Jad Kanbar, Qiyun Zhu, Se Jin Song, Tomasz Kościółek, Nicholas A. Bokulich, Joshua Lefler, Colin Brislawn, Gregory Humphrey, Sarah M. Owens, Jarrad Hampton‐Marcell, Donna Berg-Lyons, Valerie J. McKenzie, Noah Fierer, Jed A. Fuhrman, Aaron Clauset, Rick Stevens, Ashley Shade, Katherine S. Pollard, Kelly D. Goodwin, Janet Jansson, Jack A. Gilbert, Rob Knight, Jose L. Agosto Rivera, Lisa Al-Moosawi, John C. Alverdy, Katherine R. Amato, Jason Andras, Largus T. Angenent, Dionysios A. Antonopoulos, Amy Apprill, David Armitage, Kate A. Ballantine, Jiří Bárta, Julia K. Baum, Allison Berry, Ashish Bhatnagar, Monica Bhatnagar, Jennifer F. Biddle, Lucie Bittner, Bazartseren Boldgiv, Eric Bottos, Donal M. Boyer, Josephine Braun, William J. Brazelton, Francis Q. Brearley, Alexandra H. Campbell, J. Gregory Caporaso, César Cardona, JoLynn Carroll, S. Craig Cary, Brenda B. Casper, Trevor C. Charles, Haiyan Chu, Danielle C. Claar, Robert G. Clark, Jonathan B. Clayton, José C. Clemente, Alyssa T. Cochran, Maureen L. Coleman, Gavin Collins, Rita R. Colwell, Mónica Contreras, Benjamin B. Crary, Simon Creer, Daniel A. Cristol, Byron C. Crump, Duoying Cui, Sarah E. Daly, Liliana M. Dávalos, Russell D. Dawson, Jennifer R. DeFazio, Frédéric Delsuc, Hebe M. Dionisi, Maria Gloria Domínguez-Bello, Robin D. Dowell, Eric A. Dubinsky, Peter O. Dunn, Danilo Ercolini, Robert E. Espinoza, Vanessa O. Ezenwa, Nathalie Fenner, Helen S. Findlay, Irma D Fleming, Vincenzo Fogliano, Anna Forsman, Chris Freeman, Elliot S. Friedman, Giancarlo Galindo, Liza Garcia, María Alexandra García-Amado, David L. Garshelis, Robin B. Gasser, Gunnar Gerdts, Molly K. Gibson, Isaac Gifford, Ryan T. Gill, Tuğrul Giray, Antje Gittel, Peter N. Golyshin, Donglai Gong, Hans‐Peter Grossart, Kristina Guyton, Sarah–Jane Haig, Vanessa L. Hale, Ross S. Hall, Steven Hallam, Kim M. Handley, Nur A. Hasan, Shane R. Haydon, Jonathan E. Hickman, Glida Hidalgo, Kirsten Hofmockel, Jeff Hooker, Stefan Hulth, Jenni Hultman, Embriette R. Hyde, Juan Diego Ibáñez‐Álamo, Julie Jastrow, Aaron R. Jex, L. Scott Johnson, Eric R. Johnston, Stephen Joseph, Stephanie D. Jurburg, Diogo Jurelevicius, Anders Karlsson, Roger Karlsson, Seth N. Kauppinen, Colleen T. E. Kellogg, Suzanne Kennedy, Lee J. Kerkhof, Gary M. King, George W. Kling, Anson V. Koehler, Monika A. Krezalek, Jordan G. Kueneman, Regina Lamendella, Emily Landon, K. E. Lane-deGraaf, Julie LaRoche, Peter A. Larsen, Bonnie Laverock, Simon Lax, Miguel Lentino, Iris I. Levin, Pierre Liancourt, Wenju Liang, Alexandra M. Linz, David A. Lipson, Yongqin Liu, Manuel E. Lladser, Mariana Lozada, Catherine M. Spirito, Walter P. Mac Cormack, Aurora MacRae-Crerar, Magda Magris, Antonio M. Martín‐Platero, Manuel Martín‐Vivaldi, L. Margarita Martínez, Manuel Martínez‐Bueno, Ezequiel M. Marzinelli, Olivia U. Mason, Gregory D. Mayer, Jamie M. McDevitt‐Irwin, James E. McDonald, Krista L. McGuire, Katherine D. McMahon, Ryan McMinds, Mónica Medina, Joseph R. Mendelson, Jessica L. Metcalf, Folker Meyer, Fabián A. Michelangeli, Kimberley E. Miller, David A. Mills, Jeremiah J. Minich, Stéfano Mocali, Lucas Moitinho‐Silva, A. W. Moore, Rachael M. Morgan‐Kiss, Paul Munroe, David D. Myrold, Josh D. Neufeld, Yingying Ni, Graeme W. Nicol, Shaun Nielsen, Jozef I. Nissimov, Kefeng Niu, Matthew J. Nolan, Karen V. Noyce, S. L. O'Brien, Noriko Okamoto, Ludovic Orlando, Yadira Ortiz Castellano, Olayinka Osuolale, Wyatt Oswald, Jacob Parnell, Juan Manuel Peralta‐Sánchez, Peter S. Petraitis, Catherine A. Pfister, Elizabeth A. H. Pilon‐Smits, Paola Piombino, Stephen B. Pointing, F. Joseph Pollock, Caitlin Potter, Bharath Prithiviraj, Christopher Quince, Asha Rani, Ravi Ranjan, Subramanya Rao, Andrew P. Rees, Miles Richardson, Ulf Riebesell, Carol Robinson, Karl J. Rockne, Selena Marie Rodriguezl, Forest Rohwer, Wayne Roundstone, Rebecca J. Safran, Naseer Sangwan, Virginia Sanz, Matthew O. Schrenk, Mark D. Schrenzel, Nicole M. Scott, Rita L. Seger, Andaine Seguin‐Orlando, Lucy Seldin, Lauren Seyler, Baddr A. Shakhsheer, Gabriela M. Sheets, Congcong Shen, Yu Shi, Hakdong Shin, Benjamin D. Shogan, Dave Shutler, Jeffrey A. Siegel, Steve Simmons, Sara Sjöling, Daniel P. Smith, Juan José Soler, Martin Sperling, Peter D. Steinberg, Brent Stephens, Melita Stevens, Safiyh Taghavi, Vera Tai, Karen Tait, Chia L. Tan, Neslihan Taş, D. Lee Taylor, Torsten Thomas, Ina Timling, Benjamin L. Turner, Tim Urich, Luke K. Ursell, Daniël van der Lelie, William Van Treuren, Lukas Van Zwieten, Daniela Vargas-Robles, Rebecca Vega Thurber, Paola Vitaglione, Donald A. Walker, William A. Walters, Shi Wang, Tao Wang, Tom Weaver, Nicole S. Webster, Beck A. Wehrle, Pamela Weisenhorn, Sophie Weiss, Jeffrey J. Werner, Kristin West, Andrew Whitehead, Susan R. Whitehead, Linda A. Whittingham, Eske Willerslev, Allison E. Williams, Stephen A. Wood, Douglas C. Woodhams, Yeqin Yang, Jesse Zaneveld, Iratxe Zarraonaindia, Qikun Zhang, Hongxia Zhao - Nature 2017 被引用: 2,950

Our growing awareness of the microbial world's importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite recent advances in DNA sequencing, a lack of standardized protocols and common analytical frameworks impedes comparisons among studies, hindering the development of global inferences about microbial life on Earth. Here we present a meta-analysis of microbial community samples collected by hundreds of researchers for the Earth Microbiome Project. Coordinated protocols and new analytical methods, particularly the use of exact sequences instead of clustered operational taxonomic units, enable bacterial and archaeal ribosomal RNA gene sequences to be followed across multiple studies and allow us to explore patterns of diversity at an unprecedented scale. The result is both a reference database giving global context to DNA sequence data and a framework for incorporating data from future studies, fostering increasingly complete characterization of Earth's microbial diversity.