Andrew D. Smith
Active 1997–2025
- 162
- Papers
- 19,693
- Citations
- 77
- h-index
- 142
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology49.9%
- Medicine32.7%
- Agricultural and Biological Sciences3.8%
- Computer Science2.4%
- Chemistry2.2%
- Immunology and Microbiology2.2%
- Other6.8%
Topics
- Epigenetics and DNA Methylation5.8%
- Genomics and Chromatin Dynamics4.3%
- RNA modifications and cancer3.9%
- RNA Research and Splicing3.1%
- Genomics and Phylogenetic Studies2.9%
- Radiomics and Machine Learning in Medical Imaging2.7%
- Other77.3%
Coauthors
- Gregory J. Hannon15
- Michael Q. Zhang15
- Asser Abou Elkassem13
- Alexandra M. Z. Slawin10
- Emily Hodges10
- Guilherme De Sena Brandine9
- Erick M. Remer8
- Philip J. Uren8
- Luiz O. F. Penalva7
- Steven Rothenberg7
- W. Richard McCombie6
- Andrei S. Purysko5
- Andrej Lyshchik5
- Andrew P. McMahon5
- Antoine Molaro5
- Brendan H. Grubbs5
- Cody Savage5
- Dhakshinamoorthy Ganeshan5
- Gaurav Khatri5
- James Hicks5
- Mark E. Lockhart5
- Mei Qiao5
- Paul Nikolaidis5
- Qiang Song5
All papers
- Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Authors: Joshua Quick, Nathan D. Grubaugh, Steven T. Pullan, Ingra Morales Claro, Andrew D. Smith, Karthik Gangavarapu, Glenn Oliveira, Refugio Robles‐Sikisaka, Thomas F. Rogers, Nathan Beutler, Dennis R. Burton, Lia Laura Lewis‐Ximenez, Jaqueline Góes de Jesus, Marta Giovanetti, Sarah C. Hill, Allison Black, Trevor Bedford, Miles W. Carroll, Márcio Roberto Teixeira Nunes, Luíz Carlos Júnior Alcântara, Éster Cerdeira Sabino, Sally A. Baylis, Nuno R. Faria, Matthew Loose, Jared T. Simpson, Oliver G. Pybus, Kristian G. Andersen, Nicholas J. Loman - Nature Protocols 2017 cited by 1,309
- Potential Use Cases for ChatGPT in Radiology Reporting
Authors: Asser Abou Elkassem, Andrew D. Smith - American Journal of Roentgenology 2023 cited by 132
- CT Texture Analysis: Definitions, Applications, Biologic Correlates, and Challenges
Authors: Meghan G. Lubner, Andrew D. Smith, Kumar Sandrasegaran, Dushyant V. Sahani, Perry J. Pickhardt - Radiographics 2017 cited by 788
- Falco: high-speed FastQC emulation for quality control of sequencing data
Authors: Guilherme De Sena Brandine, Andrew D. Smith - F1000Research 2019 cited by 359
- A Reference Methylome Database and Analysis Pipeline to Facilitate Integrative and Comparative Epigenomics
Authors: Qiang Song, Benjamin E. Decato, Elizabeth E. Hong, Meng Zhou, Fang Fang, Jianghan Qu, Tyler H. Garvin, Michael D. Kessler, Jun Zhou, Andrew D. Smith - PLoS ONE 2013 cited by 475
- Bosniak Classification of Cystic Renal Masses, Version 2019: An Update Proposal and Needs Assessment
Authors: Stuart G. Silverman, Iván Pedrosa, James H. Ellis, Nicole Hindman, Nicola Schieda, Andrew D. Smith, Erick M. Remer, Atul B. Shinagare, Nicole E. Curci, Steven S. Raman, Shane A. Wells, Samuel D. Kaffenberger, Zhen J. Wang, Hersh Chandarana, Matthew S. Davenport - Radiology 2019 cited by 511
- Molecular characterization of the transition from acute to chronic kidney injury following ischemia/reperfusion
Authors: Jing Liu, Sanjeev Kumar, Egor Dolzhenko, Gregory F. Alvarado, Jinjin Guo, Can Lü, Yibu Chen, Meng Li, Mark C. Dessing, Riana K. Parvez, Pietro E. Cippà, A. Michaela Krautzberger, Gohar Saribekyan, Andrew D. Smith, Andrew P. McMahon - JCI Insight 2017 cited by 294
- Prospective Evaluation of AI Triage of Pulmonary Emboli on CT Pulmonary Angiograms
Authors: Steven Rothenberg, Cody Savage, Asser Abou Elkassem, Satinder P. Singh, Mostafa Abozeed, Omar Hamki, Kevin Junck, Srini Tridandapani, Mei Li, Yufeng Li, Andrew D. Smith - Radiology 2023 cited by 66
- An evolutionarily conserved gene family encodes proton-selective ion channels
Authors: Yu-Hsiang Tu, Alexander J. Cooper, Bochuan Teng, Rui B. Chang, Daniel J. Artiga, Heather N. Turner, Eric M. Mulhall, Wenlei Ye, Andrew D. Smith, Emily R. Liman - Science 2018 cited by 305
- Artificial Intelligence Literacy: Developing a Multi-institutional Infrastructure for AI Education
Authors: Jordan D. Perchik, Andrew D. Smith, Asser Abou Elkassem, Joo-Yeun Park, Steven Rothenberg, Manoj Tanwar, Paul H. Yi, Adam Sturdivant, Srini Tridandapani, Houman Sotoudeh - Academic Radiology 2022 cited by 69
- Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome
Authors: Tae Hoon Kim, Ziedulla Abdullaev, Andrew D. Smith, Keith A. Ching, Dmitri Loukinov, Roland D. Green, Michael Q. Zhang, Victor V. Lobanenkov, Bing Ren - Cell 2007 cited by 1,071
- Predicting the molecular complexity of sequencing libraries
Authors: Timothy Daley, Andrew D. Smith - Nature Methods 2013 cited by 391
- A model of breast cancer heterogeneity reveals vascular mimicry as a driver of metastasis
Authors: Elvin Wagenblast, Mar Soto, Sara Gutiérrez-Ángel, Christina Hartl, Annika L. Gable, Ashley R. Maceli, Nicolas Erard, Alissa M. Williams, Sun Y. Kim, Steffen Dickopf, J. Chuck Harrell, Andrew D. Smith, Charles M. Perou, John E. Wilkinson, Gregory J. Hannon, Simon Knott - Nature 2015 cited by 459
- Circulating Tumor Cells Exhibit Metastatic Tropism and Reveal Brain Metastasis Drivers
Authors: Rémi Klotz, Amal Thomas, Teng Teng, Sung Min Han, Oihana Iriondo, Lin Li, Sara Restrepo-Vassalli, Alan Wang, Negeen Izadian, Matthew MacKay, Byoung-San Moon, Kevin J. Liu, Sathish Kumar Ganesan, Grace Lee, Diane S. Kang, Charlotte S. Walmsley, Christopher J. Pinto, Michael F. Press, Wange Lu, Janice Lu, Dejan Juric, Aditya Bardia, James Hicks, Bodour Salhia, Frank J. Attenello, Andrew D. Smith, Min Yu - Cancer Discovery 2019 cited by 142
- An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia
Authors: Yair Benita, Hirotoshi Kikuchi, Andrew D. Smith, Michael Q. Zhang, Daniel C. Chung, Ramnik J. Xavier - Nucleic Acids Research 2009 cited by 477
- PRC2-AgeIndex as a universal biomarker of aging and rejuvenation
Authors: Mahdi Moqri, Andrea Cipriano, Daniel J. Simpson, Sajede Rasouli, Tara Murty, Tineke A. de Jong, Daniel Nachun, Guilherme De Sena Brandine, Kejun Ying, Andrei E. Tarkhov, Karolina A. Åberg, Edwin J. C. G. van den Oord, Wanding Zhou, Andrew D. Smith, Crystal L. Mackall, Vadim N. Gladyshev, Steve Horvath, M Snyder, Vittorio Sebastiano - Nature Communications 2024 cited by 60
- Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates
Authors: Antoine Molaro, Emily Hodges, Fang Fang, Qiang Song, W. Richard McCombie, Gregory J. Hannon, Andrew D. Smith - Cell 2011 cited by 445
- Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore
Authors: John R. Tyson, Phillip James, David Stoddart, Natalie Sparks, Arthur Wickenhagen, Grant Hall, Ji Hyun Choi, Hope R. Lapointe, Kimia Kamelian, Andrew D. Smith, Natalie Prystajecky, Ian Goodfellow, Sam J. Wilson, Richard Harrigan, Terrance P. Snutch, Nicholas J. Loman, Joshua Quick - 2020 cited by 431
- Site identification in high-throughput RNA-protein interaction data
Authors: Philip J. Uren, Emad Bahrami Samani, Suzanne C. Burns, Mei Qiao, Fedor V. Karginov, Emily Hodges, Gregory J. Hannon, Jeremy R. Sanford, Luiz O. F. Penalva, Andrew D. Smith - Bioinformatics, Bioinform. 2012 cited by 370
- Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney
Authors: Nils O. Lindström, Jinjin Guo, Albert D. Kim, Tracy Tran, Qiuyu Guo, Guilherme De Sena Brandine, Andrew Ransick, Riana K. Parvez, Matthew E. Thornton, Laurence Basking, Brendan H. Grubbs, Jill A. McMahon, Andrew D. Smith, Andrew P. McMahon - Journal of the American Society of Nephrology 2018 cited by 213
- Before It Gets Started: Regulating Translation at the 5′ UTR
Authors: Patrícia R. Araújo, Kihoon Yoon, Daijin Ko, Andrew D. Smith, Mei Qiao, Uthra Suresh, Suzanne Perea Burns, Luiz O. F. Penalva - Comparative and Functional Genomics 2012 cited by 303
- Accurate detection of short and long active ORFs using Ribo-seq data
Authors: Saket Choudhary, Wenzheng Li, Andrew D. Smith - Bioinformatics, Bioinform. 2019 cited by 82
- ATAC-Me Captures Prolonged DNA Methylation of Dynamic Chromatin Accessibility Loci during Cell Fate Transitions
Authors: Kelly R. Barnett, Benjamin E. Decato, Timothy J. Scott, Tyler Hansen, Bob Chen, Jonathan Attalla, Andrew D. Smith, Emily Hodges - Molecular Cell 2020 cited by 106
- In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes
Authors: Tracy Tran, Nils O. Lindström, Andrew Ransick, Guilherme De Sena Brandine, Qiuyu Guo, Albert D. Kim, Bálint Dér, János Peti‐Peterdi, Andrew D. Smith, Matthew E. Thornton, Brendan H. Grubbs, Jill A. McMahon, Andrew P. McMahon - Developmental Cell 2019 cited by 103
