Nicholas J. Loman

Active 2007–2025

92
Papers
37,160
Citations
67
h-index
90
i10-index

Citations

Citations per year for Nicholas J. Loman1983: 1 citations1992: 1 citations1999: 1 citations2004: 2 citations2006: 4 citations2007: 1 citations2008: 4 citations2009: 4 citations2010: 8 citations2011: 18 citations2012: 86 citations2013: 139 citations2014: 165 citations2015: 268 citations2016: 379 citations2017: 494 citations2018: 527 citations2019: 1,486 citations2020: 1,935 citations2021: 3,029 citations2022: 2,039 citations2023: 1,179 citations2024: 1,414 citations2025: 685 citations2026: 36 citations1984–1991: no citations, so these years are not shown1993–1998: no citations, so these years are not shown2000–2003: no citations, so these years are not shown2005: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 4,251 citing papers, 20.7% of this breakdownUnited Kingdom: 2,045 citing papers, 10% of this breakdownChina: 1,545 citing papers, 7.5% of this breakdownGermany: 996 citing papers, 4.9% of this breakdownAustralia: 749 citing papers, 3.7% of this breakdownFrance: 702 citing papers, 3.4% of this breakdownCanada: 676 citing papers, 3.3% of this breakdownBrazil: 596 citing papers, 2.9% of this breakdownItaly: 596 citing papers, 2.9% of this breakdownNetherlands: 479 citing papers, 2.3% of this breakdownSpain: 473 citing papers, 2.3% of this breakdownSwitzerland: 465 citing papers, 2.3% of this breakdown
0%20.7%Other 33.8%

Fields

  • Biochemistry, Genetics and Molecular Biology38.6%
  • Medicine36.3%
  • Environmental Science7.2%
  • Agricultural and Biological Sciences5.7%
  • Immunology and Microbiology4.2%
  • Mathematics2.2%
  • Other5.8%

Topics

  • Genomics and Phylogenetic Studies8.2%
  • SARS-CoV-2 and COVID-19 Research6.6%
  • Gut microbiota and health4.9%
  • Microbial Community Ecology and Physiology2.8%
  • COVID-19 Clinical Research Studies2.8%
  • SARS-CoV-2 detection and testing2.6%
  • Other72.1%

Coauthors

All papers

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  1. Binning metagenomic contigs by coverage and composition

    Authors: , , , , , , , , , - Nature Methods 2014 cited by 2,971

  2. Shotgun metagenomics, from sampling to analysis

    Authors: , , , , - Nature Biotechnology 2017 cited by 2,155

  3. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

    Authors: , , , , , , , , , - BMC Biology 2014 cited by 3,494

  4. Nanopore sequencing and assembly of a human genome with ultra-long reads

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , - Nature Biotechnology 2017 cited by 2,098

  5. Nanopore native RNA sequencing of a human poly(A) transcriptome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , - Nature Methods 2019 cited by 750

  6. An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

    Authors: , , , , , , , , , , , , , , , , - Genome biology 2019 cited by 1,156

  7. Real-time, portable genome sequencing for Ebola surveillance

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Antonio Mazzarelli, Sarah Meisel, Marc Mertens, Janine Michel, Didier Ngabo, Katja Nitzsche, Elisa Pallasch, Livia Victoria Patrono, Jasmine Portmann, Johanna Repits, Natasha Y. Rickett, Andreas Sachse, Katrin Singethan, Inês Vitoriano, Rahel L. Yemanaberhan, Elsa Gayle Zekeng, Trina Racine, Alexander Bello, Amadou Alpha Sall, Ousmane Faye, Oumar Faye, N’Faly Magassouba, C.V. Williams, Victoria Amburgey, Linda Winona, Emily Davis, Jon Gerlach, F Clarke -Washington, Vanessa Monteil, Marine Jourdain, Marion Bererd, Alimou Camara, Hermann Somlaré, Abdoulaye Camara, Marianne Gérard, Guillaume Bado, Bernard Baillet, Déborah Delaune, Koumpingnin Nebié, Abdoulaye Diarra, Yacouba Savane, Raymond Pallawo, Giovanna Jaramillo Gutierrez, Natacha Milhano, Isabelle Roger, Christopher J. Williams, Facinet Yattara, Kuiama Lewandowski, James G. Taylor, Phillip A. Rachwal, Daniel J. Turner, Georgios Pollakis, Julian A. Hiscox, David A. Matthews, Matthew K. O’ Shea, Andrew Johnston, Duncan Wilson, Emma Hutley, Erasmus Smit, Antonino Di, Roman Wölfel, Kilian Stoecker, Erna Fleischmann, Martin Gabriel, Simon A. Weller, Lamine Koivogui, Boubacar Diallo, Sakoba Keïta, Andrew Rambaut, Pierre Formenty and 2 more - Nature 2016 cited by 1,584

  8. APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

    Authors: , , , , , , , , , , , , , , , , , , , , - Science 2023 cited by 201

  9. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , - Nature Protocols 2017 cited by 1,309

  10. A complete bacterial genome assembled de novo using only nanopore sequencing data

    Authors: , , - Nature Methods 2015 cited by 1,513

  11. Towards a genomics-informed, real-time, global pathogen surveillance system

    Authors: , - Nature Reviews Genetics 2017 cited by 801

  12. Telomere-to-telomere assembly of a complete human X chromosome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Megan Y. Dennis, Daniela C. Soto, Ruta Sahasrabudhe, Gulhan Kaya, Josh Quick, Nicholas J. Loman, Nadine Holmes, Matthew Loose, Urvashi Surti, Rosa Ana Risques, Tina Lindsay, Robert S. Fulton, Ira M. Hall, Benedict Paten, Kerstin Howe, Winston Timp, Alice Young, James C. Mullikin, Pavel A. Pevzner, Jennifer L. Gerton, Beth A. Sullivan, Evan E. Eichler, Adam M. Phillippy - Nature 2020 cited by 840

  13. Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Susan Hopkins, Axel Gandy, Andrew Rambaut, Neil M. Ferguson - Nature 2021 cited by 1,308

  14. Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Frederico Scott Varella Malta, Aline Brito de Lima, Joice do Prado Silva, Danielle Alves Gomes Zauli, Alessandro Clayton de Souza Ferreira, Ricardo Parolin Schnekenberg, Daniel J. Laydon, Patrick Walker, Hannah M. Schlüter, Ana L. P. dos Santos, Maria S. Vidal, Valentina S. Del, Rosinaldo M. F. Filho, Helem M. dos Santos, Renato Santana Aguiar, José Luiz Proença‐Módena, Bruce Nelson, James A. Hay, Mélodie Monod, Xenia Miscouridou, Helen Coupland, Raphael Sonabend, Michaela Vollmer, Axel Gandy, Carlos A. Prete, Vítor H. Nascimento, Marc A. Suchard, Thomas A. Bowden, Sergei L. Kosakovsky Pond, Chieh‐Hsi Wu, Oliver Ratmann, Neil M. Ferguson, Christopher Dye, Nicholas J. Loman, Philippe Lemey, Andrew Rambaut, Nelson Abrahim Fraiji, Maria do P. S. S. Carvalho, Oliver G. Pybus, Seth Flaxman, Samir Bhatt, Éster Cerdeira Sabino - Science 2021 cited by 1,550

  15. De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing

    Authors: , , , , , , , , - 2016 cited by 309

  16. Establishment and cryptic transmission of Zika virus in Brazil and the Americas

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , César González-Bonilla, Carlos F. Arias, Lia Laura Lewis‐Ximenez, Sally A. Baylis, Alexandre Chieppe, Shirlei Ferreira de Aguiar, Carlos Augusto Fernandes, P. S. Lemos, Bruna Laís Sena do Nascimento, H. A. O Monteiro, Isadora Cristina de Siqueira, Maria Gabriela de Queiroz, Themis Rocha de Souza, João Felipe Bezerra, Marisa Lemos, G. F. Pereira, D. Loudal, Lúcia Cristina Corrêa Moura, Rafael Dhália, R. F. França, Tereza Magalhães, Ernesto T. A. Marques, Thomas Jaenisch, Gabriel Luz Wallau, Magliones Carneiro de Lima, Valdinete Alves do Nascimento, Erenilde Marques de Cerqueira, Maricélia Maia de Lima, D. L. Mascarenhas, José Pereira de Moura Neto, Anna S. Levin, Tânia Regina Tozetto‐Mendoza, Sílvia Nunes Szente Fonseca, Maria Cássia Mendes-Corrêa, Flavio Augusto de Pádua Milagres, Aluísio Augusto Cotrim Segurado, Edward C. Holmes, Andrew Rambaut, Trevor Bedford, Márcio Roberto Teixeira Nunes, Éster Cerdeira Sabino, L. C. J. Alcantara, Nicholas J. Loman, Oliver G. Pybus - Nature, Nat. 2017 cited by 674

  17. Virus genomes reveal factors that spread and sustained the Ebola epidemic

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal Reusken, Mariano Sánchez-Lockhart, S. F. Schaffner, John S. Schieffelin, Rachel Sealfon, Etienne Simon‐Lorière, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Tobin, Mohamed Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, S Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma K. Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N’Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou A. Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut - Nature, Nat. 2017 cited by 461

  18. Genomic and epidemiological monitoring of yellow fever virus transmission potential

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Talita Adelino, Marluce Aparecida Assunção Oliveira, M. V. F. Silva, Lívia Sacchetto, P. O. Figueiredo, Izabela Maurício de Rezende, Érica Munhoz de Mello, Rana Said, D. A. Santos, Marcela Lencine Ferraz, Mariana Gontijo de Brito, L. F. Santana, Mariane Talon de Menezes, Rodrigo Brindeiro, Amílcar Tanuri, Fabiana Cristina Pereira dos Santos, Mariana Sequetin Cunha, Juliana Silva Nogueira, Iray Maria Rocco, Antônio Charlys da Costa, Shirley Vasconcelos Komninakis, Vasco Azevedo, Alexandre Chieppe, Eliane Saraiva Machado de Araújo, Marcos César Lima de Mendonça, C. C. dos Santos, Chagas Dos Santos, A. M. Mares-Guia, Rita Maria Ribeiro Nogueira, Patrícia Carvalho de Sequeira, Ricardo Gadelha de Abreu, M. H. O. Garcia, André Luiz de Abreu, Osnei Okumoto, Erna Geessien Kroon, Carlos F. Campelo de Albuquerque, Kuiama Lewandowski, Steven T. Pullan, Miles W. Carroll, Túlio de Oliveira, Éster Cerdeira Sabino, Renato Pereira de Souza, Marc A. Suchard, Philippe Lemey, G. S. Trindade, Betânia Paiva Drumond, Ana María Bispo de Filippis, Nicholas J. Loman, Simon Cauchemez, Luíz Carlos Júnior Alcântara, Oliver G. Pybus - Science 2018 cited by 387

  19. Ultra-deep, long-read nanopore sequencing of mock microbial community standards

    Authors: , , , - GigaScience 2019 cited by 341

  20. Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic

    Authors: , , , , , , , , , , , , , , , , , , , , , , , - Cell 2021 cited by 270

  21. Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Luke B. Snell, Catherine Moore, Ewan M. Harrison, Sónia Gonçalves, Derek Fairley, Matthew Loose, Joanne Watkins, Rich Livett, Samuel Moses, Roberto Amato, Samuel M. Nicholls, Matthew Bull, Darren Smith, Jeff Barrett, David M. Aanensen, Martin D. Curran, Surendra Parmar, Dinesh Aggarwal, James G. Shepherd, Matthew D. Parker, Sharon Glaysher, Matthew Bashton, Anthony P. Underwood, Nicole Pacchiarini, Katie F. Loveson, Kate Templeton, Cordelia F. Langford, John Sillitoe, Thushan I. de Silva, Dennis Wang, Dominic Kwiatkowski, Andrew Rambaut, Justin O’Grady, Simon Cottrell, Matthew T. G. Holden, Emma C. Thomson, Husam Osman, Monique Andersson, Anoop Chauhan, Mohammed O. Hassan-Ibrahim, Mara Lawniczak, Alex Alderton, Meera Chand, Chrystala Constantinidou, Meera Unnikrishnan, Alistair C. Darby, Julian A. Hiscox, Steve Paterson, Inigo Martincorena, Erik Volz, Andrew J. Page, Oliver G. Pybus, Andrew R. Bassett, Cristina V. Ariani, Michael H. Spencer Chapman, Kathy K. Li, Rajiv Shah, Natasha Jesudason, Yusri Taha, M. McHugh, Rebecca Dewar, Aminu S. Jahun, Claire McMurray, Sarojini Pandey, James McKenna, Andrew Nelson, Gregory R. Young, Clare M. McCann, Scott Elliott, Hannah Lowe and 782 more - Cell Reports 2021 cited by 452

  22. Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , - Science 2021 cited by 516

  23. A Pilot Integrative Analysis of Colonic Gene Expression, Gut Microbiota, and Immune Infiltration in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Association of Disease With Bile Acid Pathways

    Authors: , , , , , , , , , , , , , - Journal of Crohn s and Colitis 2020 cited by 141

  24. Genomic epidemiology reveals multiple introductions of Zika virus into the United States

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , S. F. Schaffner, Christopher H. Tomkins-Tinch, Kendra West, S Winnicki, Shirlee Wohl, Nathan L. Yozwiak, Joshua Quick, Joseph R. Fauver, Kamran Khan, Shannon E. Brent, Robert C. Reiner, Paola N. Lichtenberger, Michael J. Ricciardi, Varian K. Bailey, David I. Watkins, Marshall Cone, Edgar Kopp, Kelly N. Hogan, Andrew C. Cannons, Reynald Jean, Andrew J. Monaghan, Robert F. Garry, Nicholas J. Loman, Nuno R. Faria, Mario C. Porcelli, Chalmers Vasquez, Elyse R. Nagle, Derek A. T. Cummings, Danielle Stanek, Andrew Rambaut, Mariano Sánchez-Lockhart, Pardis C. Sabeti, Leah D. Gillis, Scott F. Michael, Trevor Bedford, Oliver G. Pybus, Sharon Isern, Gustavo Palacios, Kristian G. Andersen - Nature 2017 cited by 395