Arne Elofsson
Active 1993–2026
- 141
- Papers
- 21,644
- Citations
- 75
- h-index
- 125
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology68.3%
- Computer Science9.9%
- Medicine6.7%
- Agricultural and Biological Sciences3.2%
- Immunology and Microbiology2%
- Materials Science1.9%
- Other8%
Topics
- Protein Structure and Dynamics12.9%
- Machine Learning in Bioinformatics7.3%
- RNA and protein synthesis mechanisms6.5%
- Enzyme Structure and Function5.2%
- Computational Drug Discovery Methods5.1%
- Genomics and Phylogenetic Studies4.3%
- Other58.7%
Coauthors
- Björn Wallner13
- Daniel Fischer12
- Gunnar von Heijne12
- Leszek Rychlewski12
- Patrick Bryant9
- David Menéndez Hurtado8
- Gabriele Pozzati8
- Håkan Viklund8
- Aditi Shenoy7
- Claudio Bassot7
- Diana Ekman7
- Marcin J. Skwark7
- Nanjiang Shu7
- Norman E. Davey7
- Wensi Zhu7
- John Lamb6
- Mirco Michel6
- Åsa K. Björklund6
- Bálint Mészáros5
- Erik Lindahl5
- Hossein Azizpour5
- Konstantinos D. Tsirigos5
- Petras J. Kundrotas5
- Sikander Hayat5
All papers
- TransformerCPI: improving compound-protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments
Authors: Lifan Chen, Xiaoqin Tan, Dingyan Wang, Feisheng Zhong, Xiaohong Liu, Tianbiao Yang, Xiaomin Luo, Kaixian Chen, Hualiang Jiang, Mingyue Zheng, Arne Elofsson - Bioinformatics, Bioinform. 2020 cited by 568
- A structural biology community assessment of AlphaFold2 applications
Authors: Mehmet Akdel, Douglas E. V. Pires, Eduard Porta‐Pardo, Jürgen Jänes, Arthur O. Zalevsky, Bálint Mészáros, Patrick Bryant, Lydia L. Good, Roman A. Laskowski, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Petras J. Kundrotas, Victoria Ruiz‐Serra, Carlos H. M. Rodrigues, Alistair S. Dunham, David F. Burke, Neera Borkakoti, Sameer Velankar, Adam Frost, J. Basquin, Kresten Lindorff‐Larsen, Alex Bateman, Andrey V. Kajava, Alfonso Valencia, Sergey Ovchinnikov, Janani Durairaj, David B. Ascher, Janet M. Thornton, Norman E. Davey, Amelie Stein, Arne Elofsson, Tristan I. Croll, Pedro Beltrão - Nature Structural & Molecular Biology 2022 cited by 718
- Detecting sequence signals in targeting peptides using deep learning
Authors: José Juan Almagro Armenteros, Marco Salvatore, Olof Emanuelsson, Ole Winther, Gunnar von Heijne, Arne Elofsson, Henrik Nielsen - Life Science Alliance 2019 cited by 1,114
- Critical assessment of protein intrinsic disorder prediction
Authors: Marco Necci, Damiano Piovesan, CAID Predictors, Md Tamjidul Hoque, Ian Walsh, Sumaiya Iqbal, Michele Vendruscolo, Pietro Sormanni, Chen Wang, Daniele Raimondi, Ronesh Sharma, Yaoqi Zhou, Thomas Litfin, Oxana V. Galzitskaya, Michail Yu. Lobanov, Wim Vranken, Björn Wallner, Claudio Mirabello, Nawar Malhis, Zsuzsanna Dosztányi, Gábor Erdős, Bálint Mészáros, Jianzhao Gao, Kui Wang, Gang Hu, Zhonghua Wu, Alok Sharma, Jack Hanson, K.K. Paliwal, Isabelle Callebaut, Tristan Bitard-Feildel, Gabriele Orlando, Zhenling Peng, Jinbo Xu, Sheng Wang, David T. Jones, Domenico Cozzetto, Fanchi Meng, Jing Yan, Jörg Gsponer, Jianlin Cheng, Tianqi Wu, Lukasz Kurgan, DisProt Curators, Vasilis J. Promponas, Stella Tamana, Cristina Marino‐Buslje, Elizabeth Martínez‐Pérez, Anastasia Chasapi, Christos Ouzounis, A. Keith Dunker, Andrey V. Kajava, Jérémy Leclercq, Burcu Aykaç Fas, Matteo Lambrughi, Emiliano Maiani, Elena Papaleo, Lucía B. Chemes, Lucía Álvarez, Nicolás S. González Foutel, Valentín Iglesias, Jordi Pujols, Salvador Ventura, Nicolás Palópoli, Guillermo Ignacio Benítez, Gustavo Parisi, Claudio Bassot, Arne Elofsson, Sudha Govindarajan, John Lamb, Marco Salvatore, András Hatos, Alexander Miguel Monzón, Martina Bevilacqua, Ivan Mičetić, Giovanni Minervini, Lisanna Paladin, Federica Quaglia, Emanuela Leonardi, Norman E. Davey, Tamás Horváth, Orsolya Panna Kovacs, Nikoletta Murvai, Rita Pancsa, Éva Schád, Beáta Szabó, Ágnes Tantos, Sandra Macedo‐Ribeiro, José A. Manso, Pedro José Barbosa Pereira, Radoslav Davidović, Nevena Veljković, Borbála Hajdu-Soltész, Mátyás Pajkos, Tamás Szaniszló, Mainak Guharoy, Tamás Lázár, Mauricio Macossay-Castillo, Péter Tompa, Silvio C. E. Tosatto - Nature Methods 2021 cited by 363
- Structure is three to ten times more conserved than sequence—A study of structural response in protein cores
Authors: Kristoffer Illergård, David H. Ardell, Arne Elofsson - Proteins Structure Function and Bioinformatics 2009 cited by 597
- The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
Authors: Konstantinos D. Tsirigos, Christoph Peters, Nanjiang Shu, Lukas Käll, Arne Elofsson - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 1,001
- Progress at protein structure prediction, as seen in CASP15
Authors: Arne Elofsson - Current Opinion in Structural Biology 2023 cited by 102
- DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
Authors: Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan - Nucleic Acids Research, Nucleic Acids Res. 2021 cited by 189
- GraphQA: protein model quality assessment using graph convolutional networks
Authors: Federico Baldassarre, David Menéndez Hurtado, Arne Elofsson, Hossein Azizpour - Bioinformatics, Bioinform. 2020 cited by 124
- PconsC4: fast, accurate and hassle-free contact predictions
Authors: Mirco Michel, David Menéndez Hurtado, Arne Elofsson - Bioinformatics, Bioinform. 2018 cited by 100
- The structural basis of hyperpromiscuity in a core combinatorial network of type II toxin–antitoxin and related phage defense systems
Authors: Karin Ernits, Chayan Kumar Saha, Tetiana Brodiazhenko, Bhanupratap Singh Chouhan, Aditi Shenoy, Jessica A. Buttress, Julián J. Duque-Pedraza, Veda Bojar, Jose A. Nakamoto, Tatsuaki Kurata, Artyom A. Egorov, Lena Shyrokova, Marcus Johansson, Toomas Mets, Aytan Rustamova, Jelisaveta Džigurski, Tanel Tenson, Abel Garcia‐Pino, Henrik Strahl, Arne Elofsson, Vasili Hauryliuk, Gemma C. Atkinson - National Academy of Sciences, Proceedings of the National Academy of Sciences 2023 cited by 50
- AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network
Authors: Yanlei Kang, Arne Elofsson, Yunliang Jiang, Weihong Huang, Minzhe Yu, Zhong Li - Bioinformatics, Bioinform. 2023 cited by 41
- Molecular architecture of the active mitochondrial protein gate
Authors: Takuya Shiota, Kenichiro Imai, Jian Qiu, Victoria L. Hewitt, Khershing Tan, Hsin‐Hui Shen, Noriyuki Sakiyama, Yoshinori Fukasawa, Sikander Hayat, Megumi Kamiya, Arne Elofsson, Kentaro Tomii, Paul Horton, Nils Wiedemann, Nikolaus Pfanner, Trevor Lithgow, Toshiya Endo - Science 2015 cited by 234
- DisProt: intrinsic protein disorder annotation in 2020
Authors: András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 246
- DisProt 7.0: a major update of the database of disordered proteins
Authors: Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 297
- Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain
Authors: F.‐Xabier Contreras, Andreas M. Ernst, Per Haberkant, Patrik Björkholm, Erik Lindahl, Başak Gönen, Christian Tischer, Arne Elofsson, Gunnar von Heijne, Christoph Thiele, Rainer Pepperkok, Felix Wieland, Britta Brügger - Nature 2012 cited by 373
- Peptide binder design with inverse folding and protein structure prediction
Authors: Patrick Bryant, Arne Elofsson - Communications Chemistry 2023 cited by 34
- Can correct protein models be identified?
Authors: Björn Wallner, Arne Elofsson - Protein Science 2003 cited by 715
- ProQ3D: improved model quality assessments using deep learning
Authors: Karolis Uziela, David Menéndez Hurtado, Nanjiang Shu, Björn Wallner, Arne Elofsson - Bioinformatics, Bioinform. 2016 cited by 189
- EvoBind: in silico directed evolution of peptide binders with AlphaFold
Authors: Patrick Bryant, Arne Elofsson - 2022 cited by 30
- Limits and potential of combined folding and docking
Authors: Gabriele Pozzati, Wensi Zhu, Claudio Bassot, John Lamb, Petras Kundrotas, Arne Elofsson - Bioinformatics, Bioinform. 2021 cited by 24
- Towards a structurally resolved human protein interaction network
Authors: David F. Burke, Patrick Bryant, Inigo Barrio‐Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S. Dunham, Pascal Albanese, Andrew Keller, Richard A. Scheltema, James E. Bruce, Alexander Leitner, Petras J. Kundrotas, Pedro Beltrão, Arne Elofsson - Nature Structural & Molecular Biology 2021 cited by 261
- The interface of protein structure, protein biophysics, and molecular evolution
Authors: David A. Liberles, Sarah A. Teichmann, İvet Bahar, Ugo Bastolla, Jesse D. Bloom, Erich Bornberg‐Bauer, Lucy J. Colwell, A. P. Jason de Koning, Nikolay V. Dokholyan, Julián Echave, Arne Elofsson, Dietlind L. Gerloff, Richard A. Goldstein, Johan A. Grahnen, Mark T. Holder, Clemens Lakner, Nicholas Lartillot, Simon C. Lovell, Gavin J. P. Naylor, Tina Perica, David D. Pollock, Tal Pupko, Lynne Regan, Andrew J. Roger, Nimrod D. Rubinstein, Eugene I. Shakhnovich, Kimmen Sjölander, Shamil Sunyaev, A Teufel, Jeffrey L. Thorne, Joseph W. Thornton, Daniel Weinreich, Simon Whelan - Protein Science 2012 cited by 233
- Estimation of model accuracy in CASP13
Authors: Jianlin Cheng, Myong‐Ho Choe, Arne Elofsson, Kun‐Sop Han, Jie Hou, Ali H. A. Maghrabi, Liam J. McGuffin, David Menéndez‐Hurtado, Kliment Olechnovič, Torsten Schwede, Gabriel Studer, Karolis Uziela, Česlovas Venclovas, Björn Wallner - Proteins Structure Function and Bioinformatics 2019 cited by 100
