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Tal Pupko

Active 2000–2025

86
Papers
20,257
Citations
54
h-index
74
i10-index

Citations

Citations per year for Tal Pupko1962: 1 citations1974: 1 citations1980: 2 citations1993: 1 citations1994: 1 citations1995: 1 citations1998: 2 citations2001: 3 citations2002: 7 citations2003: 23 citations2004: 49 citations2005: 77 citations2006: 114 citations2007: 161 citations2008: 133 citations2009: 134 citations2010: 171 citations2011: 172 citations2012: 171 citations2013: 233 citations2014: 214 citations2015: 209 citations2016: 224 citations2017: 179 citations2018: 197 citations2019: 623 citations2020: 610 citations2021: 651 citations2022: 533 citations2023: 366 citations2024: 626 citations2025: 267 citations2026: 20 citations1963–1973: no citations, so these years are not shown1975–1979: no citations, so these years are not shown1981–1992: no citations, so these years are not shown1996–1997: no citations, so these years are not shown1999–2000: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,090 citing papers, 23.8% of this breakdownUnited Kingdom: 804 citing papers, 9.2% of this breakdownChina: 652 citing papers, 7.4% of this breakdownGermany: 553 citing papers, 6.3% of this breakdownFrance: 410 citing papers, 4.7% of this breakdownCanada: 320 citing papers, 3.6% of this breakdownIsrael: 316 citing papers, 3.6% of this breakdownAustralia: 268 citing papers, 3% of this breakdownSpain: 243 citing papers, 2.8% of this breakdownIndia: 225 citing papers, 2.6% of this breakdownSwitzerland: 218 citing papers, 2.5% of this breakdownJapan: 216 citing papers, 2.5% of this breakdown
0%23.8%Other 28%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology64.6%
  • Medicine13.3%
  • Agricultural and Biological Sciences5.7%
  • Immunology and Microbiology3.5%
  • Computer Science3.5%
  • Environmental Science2.8%
  • Other6.6%

Topics

  • Genomics and Phylogenetic Studies5.7%
  • RNA and protein synthesis mechanisms5%
  • Protein Structure and Dynamics4%
  • RNA Research and Splicing2.3%
  • RNA modifications and cancer2.2%
  • Enzyme Structure and Function2.2%
  • Other78.6%

Coauthors

All papers

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  1. ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

    Authors: Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 3,447

  2. Using evolutionary data to make sense of macromolecules with a “face‐lifted” ConSurf

    Authors: Barak Yariv, Elon Yariv, Amit Kessel, Gal Masrati, Adi Ben Chorin, Eric Martz, Itay Mayrose, Tal Pupko, Nir Ben‐Tal - Protein Science 2023 cited by 436

  3. ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

    Authors: Haim Ashkenazy, Elana Erez, Eric Martz, Tal Pupko, Nir Ben-Tal - Nucleic Acids Research, Nucleic Acids Res. 2010 cited by 1,911

  4. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

    Authors: Meytal Landau, Itay Mayrose, Yossi Rosenberg, Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal - Nucleic Acids Research, Nucleic Acids Res. 2005 cited by 1,455

  5. GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

    Authors: Itamar Sela, Haim Ashkenazy, Kazutaka Katoh, Tal Pupko - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 887

  6. Model selection may not be a mandatory step for phylogeny reconstruction

    Authors: Shiran Abadi, Dana Azouri, Tal Pupko, Itay Mayrose - Nature Communications 2019 cited by 425

  7. ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information

    Authors: Fabian Glaser, Tal Pupko, Inbal Paz, Rachel E Bell, Dalit Bechor-Shental, Eric Martz, Nir Ben‐Tal - Bioinformatics, Bioinform. 2002 cited by 1,261

  8. FastML: a web server for probabilistic reconstruction of ancestral sequences

    Authors: Haim Ashkenazy, Osnat Penn, Adi Doron-Faigenboim, Ofir Cohen, Gina Cannarozzi, Oren Zomer, Tal Pupko - Nucleic Acids Research, Nucleic Acids Res. 2012 cited by 373

  9. Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

    Authors: Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal - Bioinformatics, ISMB 2002 cited by 658

  10. ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

    Authors: Gershon Celniker, Guy Nimrod, Haim Ashkenazy, Fabian Glaser, Eric Martz, Itay Mayrose, Tal Pupko, Nir Ben‐Tal - Israel Journal of Chemistry 2013 cited by 598

  11. Harnessing machine learning to guide phylogenetic-tree search algorithms

    Authors: Dana Azouri, Shiran Abadi, Yishay Mansour, Itay Mayrose, Tal Pupko - Nature Communications 2021 cited by 70

  12. Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires

    Authors: David Burstein, Francisco Amaro, Tal Zusman, Ziv Lifshitz, Ofir Cohen, Jack A. Gilbert, Tal Pupko, Howard A. Shuman, Gil Segal - Nature Genetics 2016 cited by 295

  13. A Fast Algorithm for Joint Reconstruction of Ancestral Amino Acid Sequences

    Authors: Tal Pupko, Itsik Pe, Ron Shamir, Dan Graur - Molecular Biology and Evolution 2000 cited by 400

  14. Type III secretion system effectors form robust and flexible intracellular virulence networks

    Authors: David Ruano‐Gallego, Julia Sanchez‐Garrido, Zuza Kozik, Elena Núñez Berrueco, Massiel Cepeda-Molero, Caroline Mullineaux-Sanders, Yasaman Naemi Baghshomali, Sabrina L. Slater, Naama Wagner, Izabela Glegola-Madejska, Theodoros I. Roumeliotis, Tal Pupko, Luis Ángel Fernández, Alfonso Rodríguez‐Patón, Jyoti S. Choudhary, Gad Frankel - Science 2021 cited by 115

  15. ModelTeller: Model Selection for Optimal Phylogenetic Reconstruction Using Machine Learning

    Authors: Shiran Abadi, Oren Avram, Saharon Rosset, Tal Pupko, Itay Mayrose - Molecular Biology and Evolution 2020 cited by 56

  16. GUIDANCE: a web server for assessing alignment confidence scores

    Authors: Osnat Penn, Eyal Privman, Haim Ashkenazy, Giddy Landan, Dan Graur, Tal Pupko - Nucleic Acids Research, Nucleic Acids Res. 2010 cited by 632

  17. Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition

    Authors: Maayan Amit, Maya Donyo, Dror Hollander, Amir Goren, Eddo Kim, Sahar Gelfman, Galit Lev-Maor, David Burstein, Schraga Schwartz, Benny Postolsky, Tal Pupko, Gil Ast - Cell Reports 2012 cited by 365

  18. Genome-Scale Identification of Legionella pneumophila Effectors Using a Machine Learning Approach

    Authors: David Burstein, Tal Zusman, Elena Degtyar, Ram Viner, Gil Segal, Tal Pupko - PLoS Pathogens 2009 cited by 270

  19. Epitopia: a web-server for predicting B-cell epitopes

    Authors: Nimrod D. Rubinstein, Itay Mayrose, Eric Martz, Tal Pupko - BMC Bioinformatics, BMC Bioinform. 2009 cited by 232

  20. Evaluation of the Ability of AlphaFold to Predict the Three-Dimensional Structures of Antibodies and Epitopes

    Authors: Ksenia Polonsky, Tal Pupko, Natalia T. Freund - The Journal of Immunology 2023 cited by 34

  21. ConSeq: the identification of functionally and structurally important residues in protein sequences

    Authors: Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal - Bioinformatics, Bioinform. 2004 cited by 521

  22. The interface of protein structure, protein biophysics, and molecular evolution

    Authors: David A. Liberles, Sarah A. Teichmann, İvet Bahar, Ugo Bastolla, Jesse D. Bloom, Erich Bornberg‐Bauer, Lucy J. Colwell, A. P. Jason de Koning, Nikolay V. Dokholyan, Julián Echave, Arne Elofsson, Dietlind L. Gerloff, Richard A. Goldstein, Johan A. Grahnen, Mark T. Holder, Clemens Lakner, Nicholas Lartillot, Simon C. Lovell, Gavin J. P. Naylor, Tina Perica, David D. Pollock, Tal Pupko, Lynne Regan, Andrew J. Roger, Nimrod D. Rubinstein, Eugene I. Shakhnovich, Kimmen Sjölander, Shamil Sunyaev, A Teufel, Jeffrey L. Thorne, Joseph W. Thornton, Daniel Weinreich, Simon Whelan - Protein Science 2012 cited by 233

  23. Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

    Authors: Alan McNally, Yaara Oren, Darren J. Kelly, Ben Pascoe, Steven Dunn, Tristan Sreecharan, Minna Vehkala, Niko Välimäki, Michael B. Prentice, Amgad Ashour, Oren Avram, Tal Pupko, Ulrich Dobrindt, Ivan Literák, Sebastian Guenther, Katharina Schaufler, Lothar H. Wieler, Zong Zhiyong, Samuel K. Sheppard, James O. McInerney, Jukka Corander - PLoS Genetics 2016 cited by 213

  24. M1CR0B1AL1Z3R - a user-friendly web server for the analysis of large-scale microbial genomics data

    Authors: Oren Avram, Dana Rapoport, Shir Portugez, Tal Pupko - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 121