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Ron Shamir

Active 1986–2026

243
Papers
21,826
Citations
76
h-index
176
i10-index

Citations

Citations per year for Ron Shamir1954: 1 citations1967: 1 citations1974: 1 citations1980: 1 citations1981: 1 citations1982: 1 citations1986: 3 citations1987: 4 citations1989: 1 citations1990: 8 citations1991: 6 citations1992: 9 citations1993: 31 citations1994: 19 citations1995: 29 citations1996: 35 citations1997: 40 citations1998: 42 citations1999: 64 citations2000: 79 citations2001: 117 citations2002: 137 citations2003: 205 citations2004: 271 citations2005: 370 citations2006: 444 citations2007: 415 citations2008: 478 citations2009: 533 citations2010: 569 citations2011: 545 citations2012: 432 citations2013: 470 citations2014: 412 citations2015: 447 citations2016: 309 citations2017: 337 citations2018: 310 citations2019: 476 citations2020: 503 citations2021: 480 citations2022: 377 citations2023: 298 citations2024: 366 citations2025: 249 citations2026: 40 citations2027: 1 citations1955–1966: no citations, so these years are not shown1968–1973: no citations, so these years are not shown1975–1979: no citations, so these years are not shown1983–1985: no citations, so these years are not shown1988: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,249 citing papers, 26.8% of this breakdownChina: 1,080 citing papers, 8.9% of this breakdownGermany: 787 citing papers, 6.5% of this breakdownUnited Kingdom: 669 citing papers, 5.5% of this breakdownCanada: 534 citing papers, 4.4% of this breakdownIsrael: 516 citing papers, 4.3% of this breakdownFrance: 504 citing papers, 4.2% of this breakdownItaly: 433 citing papers, 3.6% of this breakdownIndia: 340 citing papers, 2.8% of this breakdownJapan: 269 citing papers, 2.2% of this breakdownAustralia: 268 citing papers, 2.2% of this breakdownSpain: 267 citing papers, 2.2% of this breakdown
0%26.8%Other 26.4%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology63.4%
  • Computer Science19.9%
  • Medicine5.2%
  • Engineering2.3%
  • Physics and Astronomy1.9%
  • Agricultural and Biological Sciences1.5%
  • Other5.8%

Topics

  • Bioinformatics and Genomic Networks9.8%
  • Gene expression and cancer classification7.4%
  • Gene Regulatory Network Analysis4%
  • Genomics and Phylogenetic Studies2.9%
  • Advanced Graph Theory Research2.5%
  • Genomics and Chromatin Dynamics2.1%
  • Other71.3%

Coauthors

All papers

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  1. Multi-omic and multi-view clustering algorithms: review and cancer benchmark

    Authors: Nimrod Rappoport, Ron Shamir - Nucleic Acids Research 2018 cited by 555

  2. Modelling and analysis of gene regulatory networks

    Authors: Guy Karlebach, Ron Shamir - Nature Reviews Molecular Cell Biology 2008 cited by 1,359

  3. Network‐based prediction of protein function

    Authors: Roded Sharan, Igor Ulitsky, Ron Shamir - Molecular Systems Biology 2007 cited by 1,098

  4. Discovering statistically significant biclusters in gene expression data

    Authors: Amos Tanay, Roded Sharan, Ron Shamir - Bioinformatics, ISMB 2002 cited by 861

  5. A Fast Algorithm for Joint Reconstruction of Ancestral Amino Acid Sequences

    Authors: Tal Pupko, Itsik Pe, Ron Shamir, Dan Graur - Molecular Biology and Evolution 2000 cited by 400

  6. DOMINO: a network‐based active module identification algorithm with reduced rate of false calls

    Authors: Hagai Levi, Ran Elkon, Ron Shamir - Molecular Systems Biology 2021 cited by 94

  7. Analysis of blood-based gene expression in idiopathic Parkinson disease

    Authors: Ron Shamir, Christine Klein, David Amar, Eva-Juliane Vollstedt, Michael von Bonin, Marija Usenovic, Yvette C. Wong, Aleš Maver, Sven Poths, Hershel M. Safer, Jean‐Christophe Corvol, Suzanne Lesage, Ofer Lavi, Günther Deuschl, Gregor Kuhlenbäeumer, Heike Pawlack, Igor Ulitsky, Meike Kasten, Olaf Rieß, Alexis Brice, Borut Peterlin, Dimitri Krainc - Neurology 2017 cited by 151

  8. Clustering Gene Expression Patterns

    Authors: Amir Ben-Dor, Ron Shamir, Zohar Yakhini - Journal of Computational Biology, J. Comput. Biol. 1999 cited by 1,229

  9. Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ESCs and iPSCs during Reprogramming and Time in Culture

    Authors: Louise C. Laurent, Igor Ulitsky, Ileana Slavin, Ha Thi Thanh Tran, Andrew J. Schork, Robert Morey, C. Lynch, Julie V. Harness, Sunray Lee, María J. Barrero, Sherman Ku, M. Yu. Martynova, Ruslan Semechkin, Vasiliy Galat, Joel Gottesfeld, Juan Carlos Izpisúa Belmonte, Chuck Murry, Hans S. Keirstead, Hyun-Sook Park, Uli Schmidt, Andrew L. Laslett, Franz-Josef Muller, Caroline M. Nievergelt, Ron Shamir, Jeanne F. Loring - Cell stem cell 2011 cited by 894

  10. Recycler: an algorithm for detecting plasmids from de novo assembly graphs

    Authors: Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, Ron Shamir - Bioinformatics, Bioinform. 2016 cited by 159

  11. Reduced changes in protein compared to mRNA levels across non-proliferating tissues

    Authors: Kobi Perl, Kathy Ushakov, Yair Pozniak, Ofer Yizhar‐Barnea, Yoni Bhonker, Shaked Shivatzki, Tamar Geiger, Karen B. Avraham, Ron Shamir - BMC Genomics 2017 cited by 162

  12. A clustering algorithm based on graph connectivity

    Authors: Erez Hartuv, Ron Shamir - Information Processing Letters, Inf. Process. Lett. 2000 cited by 489

  13. Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing

    Authors: Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D. Bader, Sylvie Baier, David B. Blumenthal, Jing Chen, Maria L. Elkjaer, Carlos García-Hernández, Mohamed Helmy, Markus Hoffmann, Igor Jurišica, Max Kotlyar, Olga Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noël Malod‐Dognin, Quirin Manz, Julian Matschinske, Miles W. Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R. Pico, Rudolf Pillich, Julian Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Sáez-Rodríguez, Suryadipto Sarkar, Gideon M. Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui‐Sheng Wang, Olga Zolotareva, Jan Baumbach - Nucleic Acids Research 2024 cited by 29

  14. Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape

    Authors: Nimrod Rappoport, Elad Chomsky, Takashi Nagano, Charlie Seibert, Yaniv Lubling, Yael Baran, Aviezer Lifshitz, Wing‐Kit Leung, Zohar Mukamel, Ron Shamir, Peter Fraser, Amos Tanay - Nature Communications 2023 cited by 22

  15. Regulatory networks define phenotypic classes of human stem cell lines

    Authors: Franz-Josef Müller, Louise C. Laurent, Dennis Kostka, Igor Ulitsky, Roy Williams, Christina Lu, In‐Hyun Park, Mahendra S. Rao, Ron Shamir, Philip H. Schwartz, Nils Ole Schmidt, Jeanne F. Loring - Nature 2008 cited by 350

  16. Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing

    Authors: Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford - PLoS Computational Biology, PLoS Comput. Biol. 2017 cited by 62

  17. Integration of gene expression and DNA methylation data across different experiments

    Authors: Yonatan Itai, Nimrod Rappoport, Ron Shamir - Nucleic Acids Research 2023 cited by 31

  18. Environmental Stresses Disrupt Telomere Length Homeostasis

    Authors: Gal Hagit Romano, Yaniv Harari, Tal Yehuda, Ariel Podhorzer, Linda Rubinstein, Ron Shamir, Assaf Gottlieb, Yael Silberberg, Dana Pe’er, Eytan Ruppin, Roded Sharan, Martin Kupiec - PLoS Genetics 2013 cited by 108

  19. Compact Universal k-mer Hitting Sets

    Authors: Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford - Lecture notes in computer science, WABI 2016 cited by 40

  20. Efficient minimizer orders for large values of k using minimum decycling sets

    Authors: David Pellow, Lianrong Pu, Barış Ekim, Lior Kotlar, Bonnie Berger, Ron Shamir, Yaron Orenstein - Genome Research 2023 cited by 19

  21. Complexity Classification of Some Edge Modification Problems

    Authors: Assaf Natanzon, Ron Shamir, Roded Sharan - Discrete Applied Mathematics, Discret. Appl. Math. 1999 cited by 173

  22. Pathwidth, Bandwidth, and Completion Problems to Proper Interval Graphs with Small Cliques

    Authors: Haim Kaplan, Ron Shamir - SIAM Journal on Computing, SIAM J. Comput. 1996 cited by 110

  23. Quantification of protein half-lives in the budding yeast proteome

    Authors: Archana Belle, Amos Tanay, Ledion Bitincka, Ron Shamir, Erin K. O’Shea - National Academy of Sciences, Proceedings of the National Academy of Sciences 2006 cited by 702

  24. CLICK and EXPANDER: a system for clustering and visualizing gene expression data

    Authors: Roded Sharan, Adi Maron-Katz, Ron Shamir - Bioinformatics, Bioinform. 2003 cited by 367