Dana Pe’er
Active 1999–2025
- Also published as
- Dana Pe'er
- 139
- Papers
- 52,793
- Citations
- 84
- h-index
- 126
- i10-index
Citations
Citation sources
Countries
Institutions
- Harvard University1.3%
- Stanford University0.9%
- Broad Institute0.7%
- Inserm0.7%
- Memorial Sloan Kettering Cancer Center0.6%
- Howard Hughes Medical Institute0.6%
- Other95.2%
Fields
- Biochemistry, Genetics and Molecular Biology43.6%
- Medicine31.5%
- Immunology and Microbiology12.9%
- Computer Science5.5%
- Neuroscience2.1%
- Engineering1.5%
- Other2.9%
Topics
- Single-cell and spatial transcriptomics8.4%
- Cancer Immunotherapy and Biomarkers3.9%
- Immune Cell Function and Interaction3.2%
- Immune cells in cancer3.2%
- Bioinformatics and Genomic Networks2.9%
- Gene expression and cancer classification2.8%
- Other75.6%
Coauthors
- Linas Mažutis19
- Roshan Sharma17
- Ignas Masilionis14
- Manu Setty13
- Garry P. Nolan12
- Ronan Chaligné12
- Tal Nawy12
- Aviv Regev11
- Cassandra Burdziak11
- Elham Azizi9
- Doron Haviv8
- Jacob Levine8
- Joseph M. Chan8
- Scott W. Lowe8
- Alexander Y. Rudensky7
- Ambrose Carr7
- El-ad David Amir7
- Nir Friedman7
- Sean C. Bendall7
- Smita Krishnaswamy7
- Christine A. Iacobuzio–Donahue6
- Chrysothemis C. Brown6
- Yu-Jui Ho6
- Yubin Xie6
All papers
- The Human Cell Atlas
Authors: Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy, Hans Clevers, Bart Deplancke, Ian Dunham, James Eberwine, Roland Eils, Wolfgang Enard, Andrew Farmer, Lars Fugger, Berthold Göttgens, Nir Hacohen, Muzlifah Haniffa, Martin Hemberg, Seung Kim, Paul Klenerman, Arnold Kriegstein, Ed Lein, Sten Linnarsson, Emma Lundberg, Joakim Lundeberg, Partha Majumder, John C Marioni, Miriam Merad, Musa Mhlanga, Martijn Nawijn, Mihai Netea, Garry Nolan, Dana Pe'er, Anthony Phillipakis, Chris P Ponting, Stephen Quake, Wolf Reik, Orit Rozenblatt-Rosen, Joshua Sanes, Rahul Satija, Ton N Schumacher, Alex Shalek, Ehud Shapiro, Padmanee Sharma, Jay W Shin, Oliver Stegle, Michael Stratton, Michael J T Stubbington, Fabian J Theis, Matthias Uhlen, Alexander van Oudenaarden, Allon Wagner, Fiona Watt, Jonathan Weissman, Barbara Wold, Ramnik Xavier, Nir Yosef, Human Cell Atlas Meeting Participants - eLife 2017 cited by 2,352
- Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
Authors: Elham Azizi, Ambrose Carr, George Plitas, Andrew Cornish, Catherine Konopacki, Sandhya Prabhakaran, Juozas Nainys, Kenmin Wu, Vaidotas Kiseliovas, Manu Setty, Kristy Choi, Rachel M. Fromme, Phuong Dao, Peter T. McKenney, Ruby Wasti, Krishna Kadaveru, Linas Mažutis, Alexander Y. Rudensky, Dana Pe’er - Cell 2018 cited by 2,173
- Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
Authors: David van Dijk, Roshan Sharma, Juozas Nainys, Kristina Yim, Pooja Kathail, Ambrose Carr, Cassandra Burdziak, Kevin R. Moon, Christine L. Chaffer, Diwakar R. Pattabiraman, Brian Bierie, Linas Mažutis, Guy Wolf, Smita Krishnaswamy, Dana Pe’er - Cell 2018 cited by 1,914
- Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis
Authors: Jacob Levine, Erin F. Simonds, Sean C. Bendall, Kara L. Davis, El-ad David Amir, Michelle D. Tadmor, Oren Litvin, Harris G. Fienberg, Astraea Jager, Eli R. Zunder, Rachel Finck, Amanda Larson Gedman, Ina Radtke, James R. Downing, Dana Pe’er, Garry P. Nolan - Cell 2015 cited by 2,604
- An integrated cell atlas of the lung in health and disease
Authors: Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel Strobl, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov, Laure‐Emmanuelle Zaragosi, Yuge Ji, Meshal Ansari, Marie‐Jeanne Arguel, Leonie Apperloo, Martin Banchero, Christophe Bécavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-I Chung, Antoine Collin, Aurore Gay, Janine Gote-Schniering, Baharak Hooshiar Kashani, Kemal İnecik, Manu Jain, Theodore S. Kapellos, Tessa Kole, Sylvie Leroy, Christoph H. Mayr, Amanda J. Oliver, Michael von Papen, Lance Peter, Chase J. Taylor, Thomas Walzthoeni, Chuan Xu, Linh T. Bui, Carlo De Donno, Leander Dony, Alen Faiz, Minzhe Guo, Austin J. Gutierrez, Lukas Heumos, Ni Huang, Ignacio L. Ibarra, Nathan D. Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera‐López, Kyle J. Travaglini, Anna Wilbrey-Clark, Kaylee B. Worlock, Masahiro Yoshida, Yuexin Chen, James S. Hagood, Ahmed Agami, Péter Horváth, Joakim Lundeberg, Charles‐Hugo Marquette, Gloria Pryhuber, Chistos Samakovlis, Xin Sun, Lorraine B. Ware, Kun Zhang, Maarten van den Berge, Yohan Bossé, Tushar Desai, Oliver Eickelberg, Naftali Kaminski, Mark A. Krasnow, Robert Lafyatis, Marko Nikolić, Joseph E. Powell, Jayaraj Rajagopal, Mauricio Rojas, Orit Rozenblatt–Rosen, Max A. Seibold, Dean Sheppard, Douglas P. Shepherd, Don D. Sin, Wim Timens, Alexander M. Tsankov, Jeffrey A. Whitsett, Yan Xu, Nicholas E. Banovich, Pascal Barbry, Thu Elizabeth Duong, Christine S. Falk, Kerstin B. Meyer, Jonathan A. Kropski, Dana Pe’er, Herbert B. Schiller, Purushothama Rao Tata, Joachim L. Schultze, Sara A. Teichmann, Alexander V. Misharin, Martijn C. Nawijn, Malte D. Luecken, Fabian J. Theis - Nature Medicine 2023 cited by 760
- Chromosomal instability drives metastasis through a cytosolic DNA response
Authors: Samuel F. Bakhoum, Bryan Ngo, Ashley M. Laughney, Julie‐Ann Cavallo, Charles J. Murphy, Peter Ly, Pragya Shah, Roshan K. Sriram, Thomas B.K. Watkins, Neil K. Taunk, Mercedes A. Duran Paez, Chantal Pauli, C. H. Shaw, Kalyani Chadalavada, Vinagolu K. Rajasekhar, Giulio Genovese, Subramanian Venkatesan, Nicolai J. Birkbak, Nicholas McGranahan, Mark R. Lundquist, Quincey LaPlant, John H. Healey, Olivier Elemento, Christine H. Chung, Nancy Y. Lee, Marcin Imielenski, Gouri J. Nanjangud, Dana Pe’er, Don W. Cleveland, Simon N. Powell, Jan Lammerding, Charles Swanton, Lewis C. Cantley - Nature 2018 cited by 1,595
- Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology
Authors: Tinyi Chu, Zhong Wang, Dana Pe’er, Charles G. Danko - Nature Cancer 2022 cited by 624
- Characterization of cell fate probabilities in single-cell data with Palantir
Authors: Manu Setty, Vaidotas Kiseliovas, Jacob Levine, Adam Gayoso, Linas Mažutis, Dana Pe’er - Nature Biotechnology 2019 cited by 907
- Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade
Authors: Spencer C. Wei, Jacob Levine, Alexandria P. Cogdill, Yang Zhao, Nana-Ama A.S. Anang, Miles C. Andrews, Padmanee Sharma, Jing Wang, Jennifer A. Wargo, Dana Pe’er, James P. Allison - Cell 2017 cited by 1,301
- Lineage plasticity in prostate cancer depends on JAK/STAT inflammatory signaling
Authors: Joseph M. Chan, Samir Zaidi, Jillian R Love, Jimmy L. Zhao, Manu Setty, Kristine M. Wadosky, Anuradha Gopalan, Zi-Ning Choo, Sitara Persad, Jungmin Choi, Justin LaClair, Kayla E. Lawrence, Ojasvi Chaudhary, Tianhao Xu, Ignas Masilionis, Irina Linkov, Shangqian Wang, Cindy Lee, Afşar Barlas, Michael J. Morris, Linas Mažutis, Ronan Chaligné, Yu Chen, David W. Goodrich, Wouter R. Karthaus, Dana Pe’er, Charles L. Sawyers - Science 2022 cited by 357
- Integrated Single-Cell Atlas of Endothelial Cells of the Human Lung
Authors: Jonas C. Schupp, Taylor Adams, Carlos Cosme, Micha Sam Brickman Raredon, Yifan Yuan, Norihito Omote, Sergio Poli, Maurizio Chioccioli, Kadi-Ann Rose, Edward P. Manning, Maor Sauler, Giuseppe DeIuliis, Farida Ahangari, Nir Neumark, Arun C. Habermann, Austin J. Gutierrez, Linh T. Bui, Robert Lafyatis, Richard W. Pierce, Kerstin B. Meyer, Martijn C. Nawijn, Sarah A. Teichmann, Nicholas E. Banovich, Jonathan A. Kropski, Laura E. Niklason, Dana Pe’er, Xiting Yan, Robert Homer, Iván O. Rosas, Naftali Kaminski - Circulation 2021 cited by 458
- Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data
Authors: Karen Sachs, Omar D. Perez, Dana Pe’er, Douglas A. Lauffenburger, Garry P. Nolan - Science 2005 cited by 1,754
- Lineage plasticity in cancer: a shared pathway of therapeutic resistance
Authors: Àlvaro Quintanal-Villalonga, Joseph M. Chan, Helena A. Yu, Dana Pe’er, Charles L. Sawyers, Triparna Sen, Charles M. Rudin - Nature Reviews Clinical Oncology 2020 cited by 559
- Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Authors: Joseph M. Chan, Àlvaro Quintanal-Villalonga, Vianne R. Gao, Yubin Xie, Viola Allaj, Ojasvi Chaudhary, Ignas Masilionis, Jacklynn V. Egger, Andrew Chow, Thomas Walle, Marissa S. Mattar, Dig Vijay Kumar Yarlagadda, James L. Wang, Fathema Uddin, Michael Offin, Metamia Ciampricotti, Besnik Qeriqi, Amber Bahr, Elisa de Stanchina, Umesh Bhanot, W. Victoria Lai, Matthew J. Bott, David R. Jones, Arvin Ruiz, Marina K. Baine, Yanyun Li, Natasha Rekhtman, John T. Poirier, Tal Nawy, Triparna Sen, Linas Mažutis, Travis J. Hollmann, Dana Pe’er, Charles M. Rudin - Cancer Cell 2021 cited by 430
- The scverse project provides a computational ecosystem for single-cell omics data analysis
Authors: Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Scverse Community, Philipp Angerer, Volker Bergen, Pierre Boyeau, Maren Büttner, Gökçen Eraslan, David S. Fischer, Max Frank, Justin Hong, Michal Klein, Marius Lange, Romain Lopez, Mohammad Lotfollahi, Malte D. Luecken, Fidel Ramírez, Jeffrey Regier, Sergei Rybakov, Anna C. Schaar, Valeh Valiollah Pour Amiri, Philipp Weiler, Galen Xing, Bonnie Berger, Dana Pe’er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle, Fabian J. Theis - Nature Biotechnology 2023 cited by 343
- Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity
Authors: Chrysothemis C. Brown, Herman Gudjonson, Yuri Pritykin, Deeksha Deep, Vincent‐Philippe Lavallée, Alejandra Mendoza, Rachel M. Fromme, Linas Mažutis, Charlotte E. Ariyan, Christina S. Leslie, Dana Pe’er, Alexander Y. Rudensky - Cell 2019 cited by 631
- STING inhibits the reactivation of dormant metastasis in lung adenocarcinoma
Authors: Jing Hu, Francisco J. Sánchez‐Rivera, Zhenghan Wang, Gabriela N. Johnson, Yu-Jui Ho, Karuna Ganesh, Shigeaki Umeda, Siting Gan, Adriana M. Mujal, Rebecca B. Delconte, Jessica P. Hampton, HuiYong Zhao, Sanjay Kottapalli, Elisa de Stanchina, Christine A. Iacobuzio–Donahue, Dana Pe’er, Scott W. Lowe, Joseph C. Sun, Joan Massagué - Nature 2023 cited by 233
- SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Authors: Carly G.K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, Ian Mbano, Vincent N. Miao, Constantine N. Tzouanas, Yuming Cao, Ashraf S. Yousif, Julia Bals, Blake M. Hauser, Jared Feldman, Christoph Muus, Marc H. Wadsworth, Samuel W. Kazer, Travis K. Hughes, Benjamin A. Doran, G. James Gatter, Marko Vukovic, Faith Taliaferro, Benjamin E. Mead, Zhiru Guo, Jennifer Wang, Delphine Gras, Magali Plaisant, Meshal Ansari, Ilias Angelidis, Heiko Adler, Jennifer M. S. Sucre, Chase J. Taylor, Brian Lin, Avinash Waghray, Vanessa Mitsialis, Daniel F. Dwyer, Kathleen M. Buchheit, Joshua A. Boyce, Nora A. Barrett, Tanya M. Laidlaw, Shaina L. Carroll, Lucrezia Colonna, Victor Tkachev, Christopher W. Peterson, Alison Yu, Hengqi Zheng, Hannah P. Gideon, Caylin G. Winchell, Philana Ling Lin, Colin D. Bingle, Scott B. Snapper, Jonathan A. Kropski, Fabian J. Theis, Herbert B. Schiller, Laure‐Emmanuelle Zaragosi, Pascal Barbry, Alasdair Leslie, Hans‐Peter Kiem, JoAnne L. Flynn, Sarah M. Fortune, Bonnie Berger, Robert W. Finberg, Leslie S. Kean, Manuel Garber, Aaron G. Schmidt, Daniel Lingwood, Alex K. Shalek, José Ordovás-Montañés, Nicholas E. Banovich, Pascal Barbry, Alvis Brāzma, Tushar Desai, Thu Elizabeth Duong, Oliver Eickelberg, Christine S. Falk, Michael Farzan, Ian A. Glass, Muzlifah Haniffa, Péter Horváth, Deborah Hung, Naftali Kaminski, Mark A. Krasnow, Jonathan A. Kropski, Malte Kühnemund, Robert Lafyatis, Haeock Lee, Sylvie Leroy, Sten Linnarson, Joakim Lundeberg, Kerstin Meyer, Alexander Misharin, Martijn C. Nawijn, Marko Nikolić, José Ordovás-Montañés, Dana Pe’er, Joseph E. Powell, Stephen R. Quake, Jayaraj Rajagopal, Purushothama Rao Tata, Emma L. Rawlins, Aviv Regev, Paul A. Reyfman, Mauricio Rojas and 21 more - Cell 2020 cited by 2,494
- The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution
Authors: Orit Rozenblatt–Rosen, Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer Rood, Orr Ashenberg, Ethan Cerami, Robert J. Coffey, Emek Demir, Li Ding, Edward D. Esplin, James M. Ford, Jeremy Goecks, Sharmistha Ghosh, Joe W. Gray, Justin Guinney, Sean E. Hanlon, Shannon K. Hughes, E. Shelley Hwang, Christine A. Iacobuzio–Donahue, Judit Jané‐Valbuena, Bruce E. Johnson, Ken S. Lau, Tracy Lively, Sarah A. Mazzilli, Dana Pe’er, Sandro Santagata, Alex K. Shalek, Denis Schapiro, M Snyder, Peter K. Sorger, Avrum Spira, Sudhir Srivastava, Kai Tan, Robert B. West, Elizabeth H. Williams, Denise R. Aberle, Samuel I. Achilefu, Foluso O. Ademuyiwa, Andrew Adey, Rebecca Aft, Rachana Agarwal, Ruben A. Aguilar, Fatemeh Alikarami, Viola Allaj, Christopher I. Amos, Robert A. Anders, Michael Angelo, Kristen Anton, Orr Ashenberg, Jon C. Aster, Özgün Babur, Amir Bahmani, Akshay Balsubramani, David Barrett, Jennifer Beane, Diane E. Bender, Kathrin M. Bernt, Lynne D. Berry, Courtney B. Betts, Julie Bletz, Katie E. Blise, Adrienne Boire, Genevieve M. Boland, Alexander Borowsky, Kristopher R. Bosse, Matthew J. Bott, Ed Boyden, James D. Brooks, Raphael Bueno, Erik A. Burlingame, Qiuyin Cai, Joshua D. Campbell, Wagma Caravan, Ethan Cerami, Hassan Chaı̈b, Joseph M. Chan, Young Hwan Chang, Deyali Chatterjee, Ojasvi Chaudhary, Alyce A. Chen, Bob Chen, Changya Chen, Chia‐Hui Chen, Feng Chen, Yuan Chen, Milan G. Chheda, Koei Chin, Roxanne Chiu, Shih‐Kai Chu, Rodrigo Chuaqui, Jaeyoung Chun, Luis Cisneros, Robert J. Coffey, Graham A. Colditz, Kristina A. Cole, Natalie B. Collins, Kévin Contrepois, Lisa M. Coussens and 294 more - Cell 2020 cited by 615
- Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses
Authors: Yonit Lavin, Soma Kobayashi, Andrew M. Leader, El-ad David Amir, Naama Elefant, Camille Bigenwald, Romain Remark, Robert E. Sweeney, Christian Becker, Jacob Levine, Klaus Meinhof, Andrew Chow, Seunghee Kim-Shulze, Andrea Wolf, Chiara Medaglia, Hanjie Li, Julie Rytlewski, Ryan Emerson, Alexander Solovyov, Benjamin D. Greenbaum, Catherine Sanders, Marissa Vignali, Mary Beth Beasley, Raja M. Flores, Sacha Gnjatic, Dana Pe’er, Adeeb Rahman, Ido Amit, Miriam Mérad - Cell 2017 cited by 1,227
- Spatial CRISPR genomics identifies regulators of the tumor microenvironment
Authors: Maxime Dhainaut, Samuel A. Rose, Güray Aktürk, Aleksandra Wroblewska, Sebastian R. Nielsen, Eun Sook Park, Mark Buckup, Vladimir Roudko, Luisanna Pia, Robert E. Sweeney, Jessica Le Bérichel, C. Matthias Wilk, Anela Bektesevic, Brian H. Lee, Nina Bhardwaj, Adeeb Rahman, Alessia Baccarini, Sacha Gnjatic, Dana Pe’er, Miriam Mérad, Brian D. Brown - Cell 2022 cited by 286
- A Single-Cell Atlas of the Human Healthy Airways
Authors: Marie Deprez, Laure‐Emmanuelle Zaragosi, Marin Truchi, Christophe Bécavin, Sandra Ruiz García, Marie‐Jeanne Arguel, Magali Plaisant, Virginie Magnone, Kévin Lebrigand, Sophie Abélanet, Frédéric Brau, Agnès Paquet, Dana Pe’er, Charles‐Hugo Marquette, Sylvie Leroy, Pascal Barbry - American Journal of Respiratory and Critical Care Medicine 2020 cited by 498
- Regenerative lineages and immune-mediated pruning in lung cancer metastasis
Authors: Ashley M. Laughney, Jing Hu, Nathaniel R. Campbell, Samuel F. Bakhoum, Manu Setty, Vincent‐Philippe Lavallée, Yubin Xie, Ignas Masilionis, Ambrose Carr, Sanjay Kottapalli, Viola Allaj, Marissa S. Mattar, Natasha Rekhtman, João B. Xavier, Linas Mažutis, John T. Poirier, Charles M. Rudin, Dana Pe’er, Joan Massagué - Nature Medicine 2020 cited by 496
- An Immune Atlas of Clear Cell Renal Cell Carcinoma
Authors: Stéphane Chevrier, Jacob Levine, Vito Riccardo Tomaso Zanotelli, Karīna Siliņa, Daniel Schulz, Marina Bacac, Carola H. Ries, Laurie Ailles, Michael Alexander Spencer Jewett, Holger Moch, Maries van den Broek, Christian Beisel, Michael Stadler, Craig Gedye, Bernhard Reis, Dana Pe’er, Bernd Bodenmiller - Cell 2017 cited by 1,048
