Gary D. Bader

Active 1995–2025

Also published as
Gary D Bader
255
Papers
89,969
Citations
117
h-index
229
i10-index

Citations

Citations per year for Gary D. Bader1943: 2 citations1945: 1 citations1959: 1 citations1964: 1 citations1966: 2 citations1968: 3 citations1972: 2 citations1973: 2 citations1974: 2 citations1976: 2 citations1978: 1 citations1979: 1 citations1982: 2 citations1983: 1 citations1984: 3 citations1987: 2 citations1989: 2 citations1990: 1 citations1991: 2 citations1993: 2 citations1994: 1 citations1995: 8 citations1996: 4 citations1997: 1 citations1998: 7 citations1999: 6 citations2000: 2 citations2001: 18 citations2002: 128 citations2003: 357 citations2004: 448 citations2005: 538 citations2006: 516 citations2007: 509 citations2008: 555 citations2009: 546 citations2010: 688 citations2011: 930 citations2012: 987 citations2013: 1,066 citations2014: 1,049 citations2015: 1,240 citations2016: 1,233 citations2017: 1,035 citations2018: 1,108 citations2019: 2,607 citations2020: 3,406 citations2021: 3,951 citations2022: 3,299 citations2023: 2,418 citations2024: 3,661 citations2025: 1,821 citations2026: 142 citations1944: no citations, so this year is not shown1946–1958: no citations, so these years are not shown1960–1963: no citations, so these years are not shown1965: no citations, so this year is not shown1967: no citations, so this year is not shown1969–1971: no citations, so these years are not shown1975: no citations, so this year is not shown1977: no citations, so this year is not shown1980–1981: no citations, so these years are not shown1985–1986: no citations, so these years are not shown1988: no citations, so this year is not shown1992: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 11,635 citing papers, 24.4% of this breakdownChina: 6,306 citing papers, 13.2% of this breakdownUnited Kingdom: 3,360 citing papers, 7% of this breakdownGermany: 3,031 citing papers, 6.3% of this breakdownCanada: 2,756 citing papers, 5.8% of this breakdownItaly: 1,512 citing papers, 3.2% of this breakdownFrance: 1,443 citing papers, 3% of this breakdownSpain: 1,238 citing papers, 2.6% of this breakdownNetherlands: 1,111 citing papers, 2.3% of this breakdownIndia: 1,080 citing papers, 2.3% of this breakdownAustralia: 1,052 citing papers, 2.2% of this breakdownSwitzerland: 1,034 citing papers, 2.2% of this breakdown
0%24.4%Other 25.5%

Fields

  • Biochemistry, Genetics and Molecular Biology58.5%
  • Medicine22.6%
  • Computer Science4.9%
  • Neuroscience3.4%
  • Immunology and Microbiology3%
  • Chemistry1.9%
  • Other5.7%

Topics

  • Bioinformatics and Genomic Networks7.6%
  • Computational Drug Discovery Methods2.6%
  • Cancer Genomics and Diagnostics2.4%
  • Gene expression and cancer classification2.1%
  • RNA modifications and cancer1.9%
  • Single-cell and spatial transcriptomics1.9%
  • Other81.5%

Coauthors

All papers

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  1. The reactome pathway knowledgebase 2022

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio - Nucleic Acids Research, Nucleic Acids Res. 2021 cited by 2,542

  2. Pan-cancer analysis of whole genomes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema, J. Todd Auman, Miriam R. R. Aure, Philip Awadalla, Marta Aymerich, Gary D. Bader, Adrian Baez‐Ortega, Matthew H. Bailey, Peter J. Bailey, Miruna Balasundaram, Saianand Balu, Pratiti Bandopadhayay, Rosamonde E. Banks, Stefano Barbi, Andrew P. Barbour, Jonathan Barenboim, Jill S. Barnholtz‐Sloan, Hugh Barr, Elisabet Barrera, John G. Bartlett, Javier Bartolomé, Claudio Bassi, Oliver F. Bathe, Daniel Baumhoer, Prashant Bavi, Stephen B. Baylin, Wojciech Bażant, Duncan Beardsmore, Timothy A. Beck, Sam Behjati, Andreas Behren, Beifang Niu, Cindy Bell, Sergi Beltrán, Christopher C. Benz, Andrew Berchuck, Anke K. Bergmann, Erik N. Bergstrom, Benjamin P. Berman, Daniel M. Berney, Stephan H. Bernhart, Rameen Beroukhim, Mario Berríos, Samantha Bersani, Johanna Bertl, Miguel Betancourt, Vinayak Bhandari, Shriram G. Bhosle, Andrew V. Biankin, Matthias Bieg, Darell D. Bigner, Hans Binder, Ewan Birney, Michael J. Birrer, Nidhan K. Biswas, Bodil Bjerkehagen, Tom Bodenheimer, Lori Boice, Giada Bonizzato, Johann S. de Bono and 1,224 more - Nature 2020 cited by 3,335

  3. An automated method for finding molecular complexes in large protein interaction networks

    Authors: , - BMC Bioinformatics, BMC Bioinform. 2003 cited by 6,293

  4. The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

    Authors: , , , , , , , , , , , , , , , , - Nucleic Acids Research, Nucleic Acids Res. 2010 cited by 5,113

  5. Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Gordon Keller, Gary D. Bader, Ian D. McGilvray - Nature Communications 2018 cited by 1,620

  6. Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

    Authors: , , , , , , , , , , , - Nature Protocols 2019 cited by 2,143

  7. A reference map of the human binary protein interactome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood - Nature, Nat. 2020 cited by 1,346

  8. Single-cell transcriptomic profiling of the aging mouse brain

    Authors: , , , , , , , , , , , , , , , , , - Nature Neuroscience 2019 cited by 784

  9. Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

    Authors: , , , , - PLoS ONE 2010 cited by 2,441

  10. GeneMANIA update 2018

    Authors: , , , , , , - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 1,435

  11. International network of cancer genome projects

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Joseph G. Vockley, Koichi Watanabe, Huanming Yang, M.M.F. Yuen, T. S. Rao, Martin Bobrow, Anne Cambon‐Thomsen, Lynn G. Dressler, Iris Pauporté, Yann Joly, Patrik Kolar, Jacques Remacle, Pilar Nicolás, Michael Parker, Emmanuelle Rial‐Sebbag, Carlos M. Romeo-Casabona, Laura Lyman Rodriguez, Susan Wallace, Georgia L. Wiesner, Nikolajs Zeps, Jun Kusuda, Tohru Masui, Christian Chabannon, Youyong Lu, Bruno Clément, Feng Chen, Françoise Degos, Xiaofang Xing, Peter Geary, D. Neil Hayes, Thomas J. Hudson, Amber L. Johns, Yasushi Totoki, Hidewaki Nakagawa, Michael R. Stratton, Miguel Á. Piris, Rajiv Sarin, Aldo Scarpa, Zemin Ning, Marc J. van de Vijver, P. Andrew Futreal, Hiroyuki Aburatani, Mónica Bayés, Sancha Martin, Koichi Watanabe, Xavier Estivill, Guangwu Guo, Sean M. Grimmond, Qibin Li, Martin Hirst, Honglong Wu, Shancen Zhao, Marco A. Marra, John D. McPherson, Hidewaki Nakagawa, Zemin Ning, Geng Tian, Yijun Ruan, Yann Joly, Susan Wallace, Bartha M. Knoppers, Harold Swerdlow, Victor E. Velculescu, Emmanuelle Rial-Sebbag, Lynn G. Dressler, Liu Yang, Pilar Nicolás, Gary D. Bader, Paul C. Boutros, Georgia L. Wiesner and 156 more - Nature 2010 cited by 2,428

  12. A draft map of the human proteome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Sandip Chavan, Keshava K. Datta, Yashwanth Subbannayya, Apeksha Sahu, Soujanya D. Yelamanchi, Savita Jayaram, Pavithra Rajagopalan, Jyoti Sharma, Krishna R. Murthy, Nazia Syed, Renu Goel, Aafaque Ahmad Khan, Sartaj Ahmad, Gourav Dey, Keshav Mudgal, Aditi Chatterjee, Tai‐Chung Huang, Jun Zhong, Xinyan Wu, Patrick G. Shaw, Donald Freed, Muhammad Saddiq Zahari, Kanchan K. Mukherjee, Subramanian Shankar, Anita Mahadevan, Henry Lam, Chris J. Mitchell, Susarla Krishna Shankar, Parthasarathy Satishchandra, John T. Schroeder, Ravi Sirdeshmukh, Anirban Maitra, Steven D. Leach, Charles G. Drake, Marc K. Halushka, Thottethodi Subrahmanya Keshava Prasad, Ralph H. Hruban, Candace L. Kerr, Gary D. Bader, Christine A. Iacobuzio–Donahue, Harsha Gowda, Akhilesh Pandey - Nature 2014 cited by 2,311

  13. Functional genomic landscape of cancer-intrinsic evasion of killing by T cells

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Katherine Chan, Hong Han, Xiaowei Wang, Patricia Mero, John H. Brumell, Antonio Finelli, Laurie Ailles, Gary D. Bader, Gromoslaw A. Smolen, Gillian A. Kingsbury, Traver Hart, Charles Kung, Jason Moffat - Nature 2020 cited by 479

  14. The multimodality cell segmentation challenge: toward universal solutions

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Xiaochen Cai, Bizhe Bai, Noah F. Greenwald, David Van Valen, Erin Weisbart, Beth A. Cimini, T. Cheung, Oscar Brück, Gary D. Bader, Bo Wang - Nature Methods 2024 cited by 142

  15. A clinically applicable integrative molecular classification of meningiomas

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , - Nature 2021 cited by 456

  16. Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity

    Authors: , , , , , , , , , , , , , , , , , , , - Hepatology Communications 2021 cited by 281

  17. Intertumoral Heterogeneity within Medulloblastoma Subgroups

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Ian F. Pollack, Ronald L. Hamilton, G. Yancey Gillespie, James M. Olson, Sarah Leary, William A. Weiss, Bolesław Lach, Lola B. Chambless, Reid C. Thompson, Michael K. Cooper, Rajeev Vibhakar, Péter Hauser, Marie‐Lise C. van Veelen, Johan M. Kros, Pim J. French, Young Seob Shin, Toshihiro Kumabe, Enrique López‐Aguilar, Karel Zitterbart, Jaroslav Štěrba, Gaetano Finocchiaro, Maura Massimino, Erwin G. Van Meir, Satoru Osuka, Tomoko Shofuda, Álmos Klekner, Massimo Zollo, Jeffrey R. Leonard, Joshua B. Rubin, Nada Jabado, Steffen Albrecht, Jaume Mora, Timothy Van Meter, Shin Jung, Andrew S. Moore, Andrew R. Hallahan, Jennifer A. Chan, Daniela Pretti da Cunha Tirapelli, Carlos Gilberto Carlotti, Maryam Fouladi, José Pimentel, Cláudia C. Faria, Ali G. Saad, Luca Massimi, Linda M. Liau, Helen Wheeler, Hideo Nakamura, Samer K. Elbabaa, Mario Pérezpeña-Díazconti, Fernando Chico Ponce de León, Shenandoah Robinson, Michal Zápotocký, Álvaro Lassaletta, Annie Huang, Cynthia Hawkins, Uri Tabori, Éric Bouffet, Ute Bartels, Peter B. Dirks, James T. Rutka, Gary D. Bader, Jüri Reimand, Anna Goldenberg, Vijay Ramaswamy, Michael D. Taylor - Cancer Cell 2017 cited by 1,255

  18. Gradient of Developmental and Injury Response transcriptional states defines functional vulnerabilities underpinning glioblastoma heterogeneity

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Mathieu Lupien, H. Artee Luchman, Samuel Weiss, Stéphane Angers, Peter B. Dirks, Gary D. Bader, Trevor J. Pugh - Nature Cancer 2021 cited by 328

  19. Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Klev Diamanti, Nuno A. Fonseca, Abel González-Pérez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Hong Chen, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Young-Wook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, José M. C. Tubío, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng‐Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imieliński, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Gary D. Bader, Pratiti Bandopadhayay, Jonathan Barenboim, Rameen Beroukhim, Johanna Bertl, Keith A. Boroevich, Søren Brunak, Peter J. Campbell and 1,521 more - Nature, Nat. 2020 cited by 671

  20. Comprehensive molecular characterization of mitochondrial genomes in human cancers

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Fátima Al‐Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape, Ludmil B. Alexandrov, Adrian Ally, Kathryn Alsop, Eva G. Álvarez, Fernanda Amary, Samirkumar B. Amin, Brice Aminou, Ole Ammerpohl, Matthew J. Anderson, Yeng Ang, Davide Antonello, Pavana Anur, Samuel Aparício, Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema, J. Todd Auman, Miriam R. R. Aure, Philip Awadalla, Marta Aymerich, Gary D. Bader, Adrian Baez‐Ortega, Matthew H. Bailey, Peter J. Bailey, Miruna Balasundaram, Saianand Balu, Pratiti Bandopadhayay, Rosamonde E. Banks, Stefano Barbi, Andrew P. Barbour, Jonathan Barenboim, Jill S. Barnholtz‐Sloan, Hugh Barr, Elisabet Barrera, John Bartlett, Javier Bartolomé, Claudio Bassi, Oliver F. Bathe, Daniel Baumhoer, Prashant Bavi, Stephen B. Baylin, Wojciech Bażant, Duncan Beardsmore, Timothy A. Beck, Sam Behjati, Andreas Behren, Beifang Niu, Cindy Bell, Sergi Beltrán, Christopher C. Benz, Andrew Berchuck, Anke Bergmann, Erik N. Bergstrom, Benjamin P. Berman, Daniel M. Berney, Stephan H. Bernhart, Rameen Beroukhim, Mario Berríos and 1,241 more - Nature Genetics 2020 cited by 515

  21. Integration of biological networks and gene expression data using Cytoscape

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Trey Ideker, Gary D. Bader - Nature Protocols 2007 cited by 2,574

  22. Cytoscape.js 2023 update: a graph theory library for visualization and analysis

    Authors: , , , , , , , , , - Bioinformatics, Bioinform. 2023 cited by 165

  23. Tracing the origins of relapse in acute myeloid leukaemia to stem cells

    Authors: , , , , , , , , , , , , , , , , , , , - Nature 2017 cited by 593

  24. Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver

    Authors: , , , , , , , , , , , , , , , , , , , , , , - Journal of Hepatology 2024 cited by 159