Marc Gillespie

• Lisa Matthews18
• Peter D’Eustachio17
• Guanming Wu16
• Bijay Jassal15
• Lincoln Stein15
• Henning Hermjakob12
• Bruce May11
• Joel Weiser10
• Veronica Shamovsky10
• Karen Rothfels9
• Robin Haw9
• Ewan Birney8
• M Orlic-Milacic8
• Cristoffer Sevilla7
• David Croft7
• Esther Schmidt7
• Imre Vastrik7
• Bernard de Bono6
• Chuqiao Gong6
• Gopal Gopinath6
• Suzanna Lewis6
• Antonio Fabregat5
• Eliot Ragueneau5
• Konstantinos Sidiropoulos5

1. The reactome pathway knowledgebase 2022

   Authors: Marc Gillespie, Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro, Johannes Griss, Cristoffer Sevilla, Lisa Matthews, Chuqiao Gong, Chuan Deng, Thawfeek Varusai, Eliot Ragueneau, Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson, Nasim Sanati, Liam Beckman, Xiang Shao, Antonio Fabregat, Konstantinos Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon I. Shorser, Gary D. Bader, Emek Demir, Chris Sander, Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio - Nucleic Acids Research, Nucleic Acids Res. 2021 cited by 2,542

2. The Reactome Pathway Knowledgebase 2024

   Authors: M Orlic-Milacic, Deidre Beavers, Patrick Conley, Chuqiao Gong, Marc Gillespie, Johannes Griss, Robin Haw, Bijay Jassal, Lisa Matthews, Bruce May, Robert Petryszak, Eliot Ragueneau, Karen Rothfels, Cristoffer Sevilla, Veronica Shamovsky, Ralf Stephan, Krishna Kumar Tiwari, Thawfeek Varusai, Joel Weiser, A. Jordan Wright, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio - Nucleic Acids Research 2023 cited by 1,339

3. The Reactome pathway Knowledgebase

   Authors: Antonio Fabregat, Konstantinos Sidiropoulos, Phani Garapati, Marc Gillespie, Kerstin Hausmann, Robin Haw, Bijay Jassal, S Jupe, Florian Korninger, Sheldon McKay, Lisa Matthews, Bruce May, M Orlic-Milacic, Karen Rothfels, Veronica Shamovsky, Marissa Webber, Joel Weiser, Mark Williams, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 6,014

4. The reactome pathway knowledgebase

   Authors: Bijay Jassal, Lisa Matthews, Guilherme Viteri, Chuqiao Gong, Pascual Lorente, Antonio Fabregat, Konstantinos Sidiropoulos, Justin Cook, Marc Gillespie, Robin Haw, Fred Loney, Bruce May, M Orlic-Milacic, Karen Rothfels, Cristoffer Sevilla, Veronica Shamovsky, Solomon I. Shorser, Thawfeek Varusai, Joel Weiser, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 2,363

5. The Reactome Pathway Knowledgebase

   Authors: Antonio Fabregat, Steven Jupe, Lisa Matthews, Konstantinos Sidiropoulos, Marc Gillespie, Phani Garapati, Robin Haw, Bijay Jassal, Florian Korninger, Bruce May, M Orlic-Milacic, Corina Duenas Roca, Karen Rothfels, Cristoffer Sevilla, Veronica Shamovsky, Solomon I. Shorser, Thawfeek Varusai, Guilherme Viteri, Joel Weiser, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio - Nucleic Acids Research, Nucleic Acids Res. 2017 cited by 3,172

6. Reactome: a database of reactions, pathways and biological processes

   Authors: David Croft, Gavin O'Kelly, Guanming Wu, Robin Haw, Marc Gillespie, Lisa Matthews, Michael Caudy, Phani V. Garapati, Gopal Gopinath, Bijay Jassal, Steven Jupe, Irina Kalatskaya, Shahana Mahajan, Bruce May, Nelson Ndegwa, Esther Schmidt, Veronica Shamovsky, Christina K. Yung, Ewan Birney, Henning Hermjakob, Peter D'Eustachio, Lincoln Stein - Nucleic Acids Research, Nucleic Acids Res. 2010 cited by 1,799

7. The Reactome pathway knowledgebase

   Authors: David Croft, Antonio Fabregat Mundo, Robin Haw, M Orlic-Milacic, Joel Weiser, Guanming Wu, Michael Caudy, Phani Garapati, Marc Gillespie, Maulik R. Kamdar, Bijay Jassal, Steven Jupe, Lisa Matthews, Bruce May, Stanislav Palatnik, Karen Rothfels, Veronica Shamovsky, Heeyeon Song, Mark Williams, Ewan Birney, Henning Hermjakob, Lincoln Stein, Peter D’Eustachio - Nucleic Acids Research, Nucleic Acids Res. 2013 cited by 1,957

8. Reactome: a knowledgebase of biological pathways

   Authors: G. Joshi-Tope, Marc Gillespie, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Bernard de Bono, Bijay Jassal, Gopal R. Gopinath, G. R. Wu, Lisa Matthews, Suzanna Lewis, Ewan Birney, Lincoln Stein - Nucleic Acids Research, Nucleic Acids Res. 2004 cited by 1,316

9. The BioPAX community standard for pathway data sharing

   Authors: Emek Demir, Michael P. Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Imre Västrik, Guanming Wu, Peter D’Eustachio, Carl F. Schaefer, Joanne Luciano, Frank Schacherer, Irma Martínez‐Flores, Zhenjun Hu, Verónica Jiménez‐Jacinto, Joshi-Tope Geeta, Kumaran Kandasamy, Alejandra López-Fuentes, Huaiyu Mi, Elgar Pichler, Igor Rodchenkov, Andrea Splendiani, Sasha Tkachev, Jeremy Zucker, Gopal Gopinath, Harsha Rajasimha, Ranjani Ramakrishnan, Imran Shah, Mustafa Syed, Nadia Anwar, Özgün Babur, Michael L. Blinov, Erik Brauner, Dan Corwin, Sylva L. Donaldson, Frank Gibbons, Robert N. Goldberg, Peter Hornbeck, Augustin Luna, Peter Murray‐Rust, Eric Neumann, Oliver Ruebenacker, Matthias Samwald, Martijn van Iersel, Sarala Wimalaratne, K.W. Allen, Burk Braun, Michelle Whirl‐Carrillo, Kei-Hoi Cheung, Kam D Dahlquist, Andrew Finney, Marc Gillespie, Elizabeth M. Glass, Li Gong, Robin Haw, Michael Honig, Olivier Hubaut, David W. Kane, Shiva Krupa, Martina Kutmon, Julie Mosty Leonard, Debbie Marks, David Merberg, Victoria Petri, Alexander R. Pico, Dean Ravenscroft, Liya Ren, Nigam H. Shah, Margot Sunshine, Rebecca Tang, Ryan Whaley, Stan Letovksy, Kenneth H. Buetow, Andrey Rzhetsky, Vincent Schächter, Bruno S Sobral, Uğur Doğrusöz, Shannon K. McWeeney, Mirit I. Aladjem, Ewan Birney, Julio Collado‐Vides, Susumu Goto, Michael Hucka, Nicolas Le Novère, Natalia Maltsev, Akhilesh Pandey, Paul D. Thomas, Edgar Wingender, Peter D. Karp, Chris Sander, Gary D. Bader - Nature Biotechnology 2010 cited by 756

10. Reactome: a knowledge base of biologic pathways and processes

    Authors: Imre Västrik, Peter D’Eustachio, Esther Schmidt, Joshi-Tope Geeta, Gopal Gopinath, David Croft, Bernard de Bono, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein - Genome biology 2007 cited by 661

11. Reactome knowledgebase of human biological pathways and processes

    Authors: Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono, Phani V. Garapati, Jill Hemish, Henning Hermjakob, Bijay Jassal, Alexander Kanapin, Suzanna Lewis, Shahana Mahajan, Bruce May, Esther Schmidt, Imre Vastrik, Guanming Wu, Ewan Birney, Lincoln Stein, Peter D'Eustachio - Nucleic Acids Research, Nucleic Acids Res. 2008 cited by 886

12. Using the Reactome Database

    Authors: Karen Rothfels, M Orlic-Milacic, Lisa Matthews, Robin Haw, Cristoffer Sevilla, Marc Gillespie, Ralf Stephan, Chuqiao Gong, Eliot Ragueneau, Bruce May, Veronica Shamovsky, A. Jordan Wright, Joel Weiser, Deidre Beavers, Patrick Conley, Krishna Kumar Tiwari, Bijay Jassal, Johannes Griss, Andrea Senff‐Ribeiro, Timothy Brunson, Robert Petryszak, Henning Hermjakob, Peter D’Eustachio, Guanming Wu, Lincoln Stein - Current Protocols 2023 cited by 56

13. COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

    Authors: Marek Ostaszewski, Alexander Mazein, Marc Gillespie, Inna Kuperstein, Anna Niarakis, Henning Hermjakob, Alexander R. Pico, Egon Willighagen, Chris T. Evelo, Jan Hasenauer, Falk Schreiber, Andreas Dräger, Emek Demir, Olaf Wolkenhauer, Laura I. Furlong, Emmanuel Barillot, Joaquı́n Dopazo, Aurelio Orta‐Resendiz, Francesco Messina, Alfonso Valencia, Akira Funahashi, Hiroaki Kitano, Charles Auffray, Rudi Balling, Reinhard Schneider - Scientific Data 2020 cited by 153

14. RNAcentral: a hub of information for non-coding RNA sequences

    Authors: Blake Sweeney, Anton I. Petrov, Boris Burkov, ROBERT FINN, Alex Bateman, M. Szymański, Wojciech M. Karłowski, Jan Gorodkin, Stefan E. Seemann, Jamie J. Cannone, Robin R. Gutell, Petra Fey, Siddhartha Basu, Simon Kay, Guy Cochrane, Kostantinos Billis, David Emmert, Steven J Marygold, Rachael P. Huntley, Ruth C. Lovering, Adam Frankish, Patricia P. Chan, Todd M. Lowe, Elspeth A. Bruford, Ruth L. Seal, Jo Vandesompele, Pieter‐Jan Volders, Maria D. Paraskevopoulou, Lina Ma, Zhang Zhang, Sam Griffiths‐Jones, Janusz M. Bujnicki, Pietro Boccaletto, Judith A. Blake, Carol J. Bult, Runsheng Chen, Yi Zhao, Valerie Wood, Kim Rutherford, Elena Rivas, James H. Cole, Stanley J. F. Laulederkind, Mary Shimoyama, Marc Gillespie, M Orlic-Milacic, Ioanna Kalvari, Eric P. Nawrocki, Stacia R. Engel, J. Michael Cherry, SILVA Team, Tanya Berardini, Artemis G. Hatzigeorgiou, Dimitra Karagkouni, Kevin Howe, Paul Davis, Marcel E. Dinger, Shunmin He, Maki Yoshihama, Naoya Kenmochi, Peter F. Stadler, Kelly P. Williams - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 93

15. Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

    Authors: Anna Niarakis, Marek Ostaszewski, Alexander Mazein, Inna Kuperstein, Martina Kutmon, Marc Gillespie, Akira Funahashi, Márcio Luís Acencio, Ahmed Abdelmonem Hemedan, Michael Aichem, Karsten Klein, Tobias Czauderna, Felicia Burtscher, Takahiro Yamada, Yusuke Hiki, Noriko Hiroi, Finterly Hu, Nhung Pham, Friederike Ehrhart, Egon Willighagen, Alberto Valdeolivas, Aurélien Dugourd, Francesco Messina, Marina Esteban‐Medina, María Peña-Chilet, Kinza Rian, Sylvain Soliman, Sara Sadat Aghamiri, Bhanwar Lal Puniya, Aurélien Naldi, Tomáš Helikar, Vidisha Singh, Marco Fariñas Fernández, Viviam Bermudez, Eirini Tsirvouli, Arnau Montagud, Vincent Noël, Miguel Ponce-de-León, Dieter Maier, Angela Bauch, Benjamin M. Gyori, John A. Bachman, Augustin Luna, Janet Piñero, Laura I. Furlong, Irina Balaur, Adrien Rougny, Yohan Jarosz, Rupert W. Overall, Robert D. Phair, Livia Perfetto, Lisa Matthews, Devasahayam Arokia Balaya Rex, Marija Orlic-Milacic, Luis Cristóbal Monraz Gómez, Bertrand De Meulder, Jean‐Marie Ravel, Bijay Jassal, Venkata Satagopam, Guanming Wu, Martin Golebiewski, Piotr Gawron, Laurence Calzone, J. Beckmann, Chris T. Evelo, Peter D’Eustachio, Falk Schreiber, Julio Sáez-Rodríguez, Joaquı́n Dopazo, Martin Kuiper, Alfonso Valencia, Olaf Wolkenhauer, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID-19 Disease Map Community - Frontiers in Immunology 2024 cited by 21

16. Reactome and ORCID - fine-grained credit attribution for community curation

    Authors: Guilherme Viteri, Lisa Matthews, Thawfeek M. Varusai, Marc Gillespie, Marija Milacic, Justin Cook, Joel Weiser, Solomon Shorser, Konstantinos Sidiropoulos, Antonio Fabregat, Robin Haw, Guanming Wu, Lincoln Stein, Peter D'Eustachio, Henning Hermjakob - Database, Database J. Biol. Databases Curation 2019 cited by 20

17. REACTOME: A KNOWLEDGEBASE OF BIOLOGICAL PATHWAYS

    Authors: Lincoln Stein, Peter D’Eustachio, Gopal Gopinathrao, Marc Gillespie, Lisa Matthews, Guanming Wu, Imre Västrik, Esther Schmidt, Bernard de Bono, Bijay Jassal, David Croft, Ewan Birney, Suzanna Lewis - Computational Systems Bioinformatics 2006 cited by 189

18. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

    Authors: Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin G. Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu - Database, Database J. Biol. Databases Curation 2013 cited by 75

19. Reactome - A Knowledgebase of Biological Pathways

    Authors: Esther Schmidt, Ewan Birney, David Croft, Bernard de Bono, Peter D'Eustachio, Marc Gillespie, Gopal Gopinath, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Lincoln Stein, Imre Vastrik, Guanming Wu - Lecture notes in computer science, OTM Workshops (1) 2006 cited by 69

20. The Reactome Knowledgebase 2026

    Authors: Eliot Ragueneau, Chuqiao Gong, Pierre Sinquin, Cristoffer Sevilla, Deidre Beavers, Alexander Grentner, Johannes Griss, Gregory Hogue, Nancy T. Li, Lisa Matthews, Bruce May, M Orlic-Milacic, Helia Mohammadi, Robert Petryszak, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Krishna Kumar Tiwari, Joel Weiser, Adam Wright, Marc Gillespie, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio - Nucleic Acids Research 2025 cited by 26

21. Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

    Authors: Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam J. Wright, Bijay Jassal, Veronica Shamovsky, Quang M. Trinh, Marc Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D. Stein, Peter D'Eustachio, Guanming Wu - Database, Database J. Biol. Databases Curation 2023 cited by 4

22. Reactome: An integrated expert model of human molecular processes and access toolkit

    Authors: Bernard de Bono, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Gopal Gopinath, David Croft, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein - Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics, J. Integr. Bioinform. 2007 cited by 2

All 22 papers shown.