Quaid Morris
Active 1995–2025
- 157
- Papers
- 33,351
- Citations
- 77
- h-index
- 127
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology69%
- Medicine17%
- Computer Science4.5%
- Immunology and Microbiology2.4%
- Agricultural and Biological Sciences2%
- Neuroscience1.6%
- Other3.5%
Topics
- RNA Research and Splicing7.4%
- RNA modifications and cancer6.2%
- Bioinformatics and Genomic Networks5.3%
- RNA and protein synthesis mechanisms4.7%
- Gene expression and cancer classification2.7%
- Cancer-related molecular mechanisms research2.6%
- Other71.1%
Coauthors
- Timothy R. Hughes40
- Brendan J. Frey21
- Amit G. Deshwar17
- Benjamin J. Blencowe16
- Debashish Ray15
- Gary D. Bader10
- Jeff Wintersinger10
- Paul C. Boutros9
- Wen Zhang9
- Hong Zheng8
- Howard D. Lipshitz8
- Kaitlin U. Laverty8
- Maxime Tarabichi8
- Mihai Albu8
- Yulia Rubanova8
- Esther T. Chan7
- Hilal Kazan7
- Khalid Zuberi7
- Matthew T. Weirauch7
- Sara Mostafavi7
- Stefan C. Dentro7
- Xiao Li7
- Arttu Jolma6
- David J. Adams6
All papers
- The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
Authors: David Warde-Farley, Sylva L. Donaldson, Ovi Comes, Khalid Zuberi, Rashad Badrawi, Pauline Chao, Max Franz, Chris Grouios, Farzana Kazi, Christian Tannus Lopes, Anson Maitland, Sara Mostafavi, Jason Montojo, Quentin Shao, George Wright, Gary D. Bader, Quaid Morris - Nucleic Acids Research, Nucleic Acids Res. 2010 cited by 5,113
- GeneMANIA update 2018
Authors: Max Franz, Harold Rodriguez, Christian Tannus Lopes, Khalid Zuberi, Jason Montojo, Gary D. Bader, Quaid Morris - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 1,435
- Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Authors: Stefan C. Dentro, Ignaty Leshchiner, Kerstin Haase, Maxime Tarabichi, Jeff Wintersinger, Amit G. Deshwar, Kaixian Yu, Yulia Rubanova, Geoff Macintyre, Jonas Demeulemeester, Ignacio Vázquez-Garćıa, Kortine Kleinheinz, Dimitri Livitz, Salem Malikić, Nilgun Donmez, Subhajit Sengupta, Pavana Anur, Clemency Jolly, Marek Cmero, Daniel Rosebrock, Steven E. Schumacher, Yu Fan, Matthew W. Fittall, Ruben M. Drews, Xiaotong Yao, Thomas B.K. Watkins, Ju‐Hee Lee, Matthias Schlesner, Hongtu Zhu, David J. Adams, Nicholas McGranahan, Charles Swanton, Gad Getz, Paul C. Boutros, Marcin Imieliński, Rameen Beroukhim, S. Cenk Şahinalp, Yuan Ji, Martin Peifer, Iñigo Martincorena, Florian Markowetz, Ville Mustonen, Ke Yuan, Moritz Gerstung, Paul T. Spellman, Wenyi Wang, Quaid Morris, David C. Wedge, Peter Van Loo, Stefan C. Dentro, Ignaty Leshchiner, Moritz Gerstung, Clemency Jolly, Kerstin Haase, Maxime Tarabichi, Jeff Wintersinger, Amit G. Deshwar, Kaixian Yu, Santiago González, Yulia Rubanova, Geoff Macintyre, Jonas Demeulemeester, David J. Adams, Pavana Anur, Rameen Beroukhim, Paul C. Boutros, David D.L. Bowtell, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Marek Cmero, Yupeng Cun, Kevin J. Dawson, Nilgun Donmez, Ruben M. Drews, Roland Eils, Yu Fan, Matthew W. Fittall, Dale W. Garsed, Gad Getz, Gavin Ha, Marcin Imieliński, Lara Jerman, Yuan Ji, Kortine Kleinheinz, Juhee Lee, Henry Lee-Six, Dimitri Livitz, Salem Malikić, Florian Markowetz, Iñigo Martincorena, Thomas J. Mitchell, Ville Mustonen, Layla Oesper, Martin Peifer, Myron Peto, Benjamin J. Raphael, Daniel Rosebrock, S. Cenk Şahinalp, Adriana Salcedo and 19 more - Cell 2021 cited by 571
- Colorectal Cancer Cells Enter a Diapause-like DTP State to Survive Chemotherapy
Authors: Sumaiyah K. Rehman, Jennifer Haynes, Évelyne Collignon, Kevin R. Brown, Yadong Wang, Allison M.L. Nixon, Jeffrey P. Bruce, Jeffrey A. Wintersinger, Arvind Singh Mer, Edwyn B.L. Lo, Cherry Leung, Evelyne Lima‐Fernandes, Nicholas Pedley, Fraser Soares, Sophie McGibbon, Housheng Hansen He, Aaron Pollet, Trevor J. Pugh, Benjamin Haibe‐Kains, Quaid Morris, Miguel Ramalho‐Santos, Sidhartha Goyal, Jason Moffat, Catherine O′Brien - Cell 2021 cited by 509
- A compendium of RNA-binding motifs for decoding gene regulation
Authors: Debashish Ray, Hilal Kazan, Kate B. Cook, Matthew T. Weirauch, Hamed S. Najafabadi, Xiao Li, Serge Gueroussov, Mihai Albu, Hong Zheng, Ally Yang, Hong Na, Manuel Irimia, Leah H. Matzat, Ryan K. Dale, Sarah A. Smith, Christopher A. Yarosh, Seth M. Kelly, Behnam Nabet, Desirea Mecenas, Weimin Li, Rakesh S. Laishram, Mei Qiao, Howard D. Lipshitz, Fabio Piano, Anita H. Corbett, Russ P. Carstens, Brendan J. Frey, Richard A. Anderson, Kristen W. Lynch, Luiz O. F. Penalva, Elissa P. Lei, Andrew G. Fraser, Benjamin J. Blencowe, Quaid Morris, Timothy R. Hughes - Nature, Nat. 2013 cited by 1,646
- High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies
Authors: Ji‐Young Youn, Wade H. Dunham, Seo Jung Hong, James D.R. Knight, Mikhail Bashkurov, Ginny I. Chen, Halil Bagci, Bhavisha Rathod, Graham MacLeod, Simon Eng, Stéphane Angers, Quaid Morris, Marc R. Fabian, Jean‐François Côté, Anne‐Claude Gingras - Molecular Cell 2018 cited by 820
- The human splicing code reveals new insights into the genetic determinants of disease
Authors: Hui Xiong, Babak Alipanahi, Leo J. Lee, Hannes Bretschneider, Daniele Merico, Ryan K. C. Yuen, Yimin Hua, Serge Gueroussov, Hamed S. Najafabadi, Timothy Hughes, Quaid Morris, Yoseph Barash, Adrian R. Krainer, Nebojša Jojić, Stephen W. Scherer, Benjamin J. Blencowe, Brendan J. Frey - Science 2014 cited by 1,318
- GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
Authors: Sara Mostafavi, Debajyoti Ray, David Warde-Farley, Chris Grouios, Quaid Morris - Genome biology 2008 cited by 1,126
- RBPDB: a database of RNA-binding specificities
Authors: Kate B. Cook, Hilal Kazan, Khalid Zuberi, Quaid Morris, Timothy R. Hughes - Nucleic Acids Research, Nucleic Acids Res. 2006 cited by 702
- A practical guide to cancer subclonal reconstruction from DNA sequencing
Authors: Maxime Tarabichi, Adriana Salcedo, Amit G. Deshwar, Máire Ní Leathlobhair, Jeff Wintersinger, David C. Wedge, Peter Van Loo, Quaid Morris, Paul C. Boutros - Nature Methods 2021 cited by 201
- A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
Authors: Wei Jiao, Gurnit Atwal, Paz Polak, Rosa Karlić, Edwin Cuppen, Fátima Al‐Shahrour, Gurnit Atwal, Peter J. Bailey, Andrew V. Biankin, Paul C. Boutros, Peter J. Campbell, David K. Chang, Susanna L. Cooke, Vikram Deshpande, Bishoy M. Faltas, William C. Faquin, Levi A. Garraway, Gad Getz, Sean M. Grimmond, Syed Haider, Katherine A. Hoadley, Wei Jiao, Vera B. Kaiser, Rosa Karlić, Mamoru Kato, Kirsten Kübler, Alexander J. Lazar, Constance H. Li, David N. Louis, Adam Margolin, Sancha Martin, Hardeep K. Nahal-Bose, G. Petur Nielsen, Serena Nik‐Zainal, Larsson Omberg, Christine P’ng, Marc D. Perry, Paz Polak, Esther Rheinbay, Mark A. Rubin, Colin A. Semple, Dennis C. Sgroi, Tatsuhiro Shibata, Reiner Siebert, John A. Smith, Lincoln Stein, Miranda D. Stobbe, Ren Sun, Kevin Thai, Derek Wright, Chin‐Lee Wu, Ke Yuan, Junjun Zhang, Alexandra Danyi, Jeroen de Ridder, Carla van Herpen, Martijn P. Lolkema, Neeltje Steeghs, Gad Getz, Quaid Morris, Lincoln Stein, Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams, Nishant Agrawal, Keun Soo Ahn, Sung-Min Ahn, Hiroshi Aikata, Rehan Akbani, Kadir C. Akdemir, Hikmat Al‐Ahmadie, Sultan T. Al‐Sedairy, Fátima Al‐Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape, Ludmil B. Alexandrov, Adrian Ally, Kathryn Alsop, Eva G. Álvarez, Fernanda Amary, Samirkumar B. Amin, Brice Aminou, Ole Ammerpohl, Matthew J. Anderson, Yeng Ang, Davide Antonello, Pavana Anur, Samuel Aparício, Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov and 1,285 more - Nature Communications 2020 cited by 238
- The Genetic Landscape of a Cell
Authors: Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St.Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renée L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy H.Y. Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne‐Claude Gingras, Quaid Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda Andrews, Charles Boone - Science 2010 cited by 2,265
- Diversity and Complexity in DNA Recognition by Transcription Factors
Authors: Gwenaël Badis, Michael F. Berger, Anthony Philippakis, Shaheynoor Talukder, Andrew R. Gehrke, Savina Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna S. Kuznetsov, Chi-Fong Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk - Science 2009 cited by 1,044
- PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
Authors: Amit G. Deshwar, Shankar Vembu, Christina K. Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris - Genome Biology 2015 cited by 491
- The Evolutionary Landscape of Localized Prostate Cancers Drives Clinical Aggression
Authors: Shadrielle M. G. Espiritu, Lydia Liu, Yulia Rubanova, Vinayak Bhandari, Erle M. Holgersen, Lesia Szyca, Natalie S. Fox, Melvin L.K. Chua, Takafumi N. Yamaguchi, Lawrence E. Heisler, Julie Livingstone, Jeff Wintersinger, Fouad Yousif, Emilie Lalonde, Alexandre Rouette, Adriana Salcedo, Kathleen E. Houlahan, Constance H. Li, Vincent Huang, Michael Fraser, Theodorus van der Kwast, Quaid Morris, Robert G. Bristow, Paul C. Boutros - Cell 2018 cited by 274
- Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
Authors: Debashish Ray, Hilal Kazan, Esther T. Chan, Lourdes Peña‐Castillo, Sidharth Chaudhry, Shaheynoor Talukder, Benjamin J. Blencowe, Quaid Morris, Timothy R. Hughes - Nature Biotechnology 2009 cited by 497
- Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences
Authors: Arttu Jolma, Jilin Zhang, Estefanía Mondragón, Ekaterina Morgunova, Teemu Kivioja, Kaitlin U. Laverty, Yimeng Yin, Fangjie Zhu, Gleb Bourenkov, Quaid Morris, Timothy R. Hughes, L. James Maher, Jussi Taipale - Genome Research 2020 cited by 125
- Similarity regression predicts evolution of transcription factor sequence specificity
Authors: Samuel A. Lambert, Ally Yang, Alexander Sasse, Gwendolyn Cowley, Mihai Albu, Mark X. Caddick, Quaid Morris, Matthew T. Weirauch, Timothy R. Hughes - Nature Genetics 2019 cited by 159
- GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop
Authors: Jason Montojo, Khalid Zuberi, Harold Rodriguez, Farzana Kazi, George Wright, Sylva L. Donaldson, Quaid Morris, Gary D. Bader - Bioinformatics, Bioinform. 2010 cited by 661
- Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences
Authors: Michael F. Berger, Gwenaël Badis, Andrew R. Gehrke, Shaheynoor Talukder, Anthony Philippakis, Lourdes Peña‐Castillo, Trevis M. Alleyne, Sanié Mnaimneh, Olga Botvinnik, Esther T. Chan, Faiqua Khalid, Wen Zhang, Daniel E. Newburger, Savina Jaeger, Quaid Morris, Martha L. Bulyk, Timothy R. Hughes - Cell 2008 cited by 641
- The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation
Authors: Adam Kosti, Patricia Rosa De Araujo, Wei-Qing Li, Gabriela D. A. Guardia, Jennifer Chiou, Caihong Yi, Debashish Ray, Fabiana Meliso, Yi-Ming Li, Talia Delambre, Mei Qiao, Suzanne S. Burns, Franziska K. Lorbeer, Fanny Georgi, Markus Flosbach, Sarah Klinnert, Anne Jenseit, Xiufen Lei, Carolina Romero Sandoval, Kevin Ha, Hong Zheng, Renu Pandey, Aleksandra Gruslova, Yogesh K. Gupta, Andrew Brenner, Erzsebet Kokovay, Timothy R. Hughes, Quaid Morris, Pedro A. F. Galante, Stefano Tiziani, Luiz O. F. Penalva - Genome biology 2020 cited by 125
- Cytoscape Web: an interactive web-based network browser
Authors: Christian Tannus Lopes, Max Franz, Farzana Kazi, Sylva L. Donaldson, Quaid Morris, Gary D. Bader - Bioinformatics, Bioinform. 2010 cited by 746
- Exploration of Essential Gene Functions via Titratable Promoter Alleles
Authors: Sanié Mnaimneh, Armaity P. Davierwala, Jennifer Haynes, Jason Moffat, Wentao Peng, Wen Zhang, Xueqi Yang, Jeff Pootoolal, Gordon Chua, Andrés López, Miles Trochesset, Darcy L Morse, Nevan J. Krogan, Shawna L. Hiley, Zhijian Li, Quaid Morris, Jörg Grigull, Nicholas Mitsakakis, Christopher J. Roberts, Jack Greenblatt, Charles Boone, Chris A. Kaiser, Brenda Andrews, Timothy R. Hughes - Cell 2004 cited by 620
- Evaluation of methods for modeling transcription factor sequence specificity
Authors: Matthew T. Weirauch, Atina G. Coté, Raquel Norel, Matti Annala, Yue Zhao, Todd Riley, Julio Sáez-Rodríguez, Thomas Cokelaer, Anastasia Vedenko, Shaheynoor Talukder, Harmen J. Bussemaker, Quaid Morris, Martha L. Bulyk, Gustavo Stolovitzky, Timothy R. Hughes - Nature Biotechnology 2013 cited by 411
