litlas
Log inCreate account

Blake A. Simmons

Active 2001–2025

150
Papers
24,177
Citations
81
h-index
142
i10-index

Citations

Citations per year for Blake A. Simmons1983: 2 citations2002: 3 citations2003: 4 citations2004: 6 citations2005: 23 citations2006: 28 citations2007: 30 citations2008: 29 citations2009: 35 citations2010: 78 citations2011: 145 citations2012: 155 citations2013: 169 citations2014: 184 citations2015: 206 citations2016: 226 citations2017: 207 citations2018: 211 citations2019: 670 citations2020: 706 citations2021: 792 citations2022: 633 citations2023: 459 citations2024: 684 citations2025: 417 citations2026: 8 citations1984–2001: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 1,724 citing papers, 21.6% of this breakdownChina: 1,201 citing papers, 15% of this breakdownGermany: 413 citing papers, 5.2% of this breakdownIndia: 380 citing papers, 4.8% of this breakdownUnited Kingdom: 371 citing papers, 4.6% of this breakdownFrance: 228 citing papers, 2.9% of this breakdownAustralia: 219 citing papers, 2.7% of this breakdownBrazil: 210 citing papers, 2.6% of this breakdownCanada: 209 citing papers, 2.6% of this breakdownDenmark: 198 citing papers, 2.5% of this breakdownNetherlands: 186 citing papers, 2.3% of this breakdownJapan: 183 citing papers, 2.3% of this breakdown
0%21.6%Other 30.9%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology36.7%
  • Engineering31%
  • Environmental Science9.2%
  • Agricultural and Biological Sciences8.4%
  • Medicine4.6%
  • Chemistry2.3%
  • Other7.8%

Topics

  • Biofuel production and bioconversion10.2%
  • Microbial Metabolic Engineering and Bioproduction8.7%
  • Genomics and Phylogenetic Studies5%
  • Lignin and Wood Chemistry3.8%
  • Catalysis for Biomass Conversion3.6%
  • Microbial Community Ecology and Physiology3.5%
  • Other65.2%

Coauthors

All papers

Open in search
  1. MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

    Authors: Yu-Wei Wu, Blake A. Simmons, Steven W. Singer - Bioinformatics, Bioinform. 2015 cited by 2,959

  2. Machine learning for metabolic engineering: A review

    Authors: Christopher E. Lawson, Jose Manuel Martí, Tijana Radivojević, Sai Vamshi R. Jonnalagadda, Reinhard Gentz, Nathan J. Hillson, Sean Peisert, Joonhoon Kim, Blake A. Simmons, Christopher J. Petzold, Steven W. Singer, Aindrila Mukhopadhyay, Deepti Tanjore, Joshua G. Dunn, Héctor García Martín - Metabolic Engineering 2020 cited by 301

  3. MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

    Authors: Yu‐Wei Wu, Yung-Hsu Tang, Susannah G. Tringe, Blake A. Simmons, Steven W. Singer - Microbiome 2014 cited by 756

  4. Perspectives for self-driving labs in synthetic biology

    Authors: Héctor García Martín, Tijana Radivojević, Jeremy Zucker, Kristofer E. Bouchard, Jess Sustarich, Sean Peisert, Dan Arnold, Nathan J. Hillson, G. Babnigg, Jose Manuel Martí, Chris Mungall, Gregg T. Beckham, Lucas Waldburger, James M. Carothers, ShivShankar Sundaram, D. Agarwal, Blake A. Simmons, Tyler W. H. Backman, Deepanwita Banerjee, Deepti Tanjore, Lavanya Ramakrishnan, Anup K. Singh - Current Opinion in Biotechnology 2023 cited by 102

  5. A comparative genomics study of 23 Aspergillus species from section Flavi

    Authors: Inge Kjærbølling, Tammi Vesth, Jens C. Frisvad, Jane Lind Nybo Rasmussen, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt, Alan Kuo, Atsushi Sato, Ellen Kirstine Lyhne, Martin E. Kogle, Ad Wiebenga, Roland S. Kun, Ronnie J. M. Lubbers, Miia Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt LaButti, Anna Lipzen, Stephen J. Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A. Simmons, Jon Magnuson, Bernard Henrissat, Uffe Hasbro Mortensen, Thomas Ostenfeld Larsen, Ronald P. de Vries, Igor V. Grigoriev, Masayuki Machida, Scott Baker, Mikael Rørdam Andersen - Nature Communications 2020 cited by 208

  6. The challenge of enzyme cost in the production of lignocellulosic biofuels

    Authors: Daniel Klein‐Marcuschamer, Piotr Oleśkowicz-Popiel, Blake A. Simmons, Harvey W. Blanch - Biotechnology and Bioengineering 2011 cited by 986

  7. A mosaic monoploid reference sequence for the highly complex genome of sugarcane

    Authors: Olivier Garsmeur, Gaëtan Droc, Rudie Antonise, Jane Grimwood, Bernard Potier, Karen S. Aitken, Jerry Jenkins, Guillaume Martin, Carine Charron, Catherine Hervouet, Laurent Costet, Nabila Yahiaoui, Adam Healey, David Sims, Yesesri Cherukuri, Avinash Sreedasyam, Andrzej Kilian, Agnes P. Chan, Marie‐Anne Van Sluys, Kankshita Swaminathan, Christopher D. Town, Hélène Bergès, Blake A. Simmons, J. C. Glaszmann, Edwin van der Vossen, Robert J Henry, Jeremy Schmutz, Angélique D’Hont - Nature Communications 2018 cited by 456

  8. Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts

    Authors: Junko Yaegashi, James Kirby, Masakazu Ito, Jian Sun, Tanmoy Dutta, Mona Mirsiaghi, Eric Sundström, Alberto Rodriguez, Edward E. K. Baidoo, Deepti Tanjore, Todd Pray, Kenneth L. Sale, Seema Singh, Jay D. Keasling, Blake A. Simmons, Steven W. Singer, Jon Magnuson, Adam P. Arkin, Jeffrey M. Skerker, John M. Gladden - Biotechnology for Biofuels 2017 cited by 248

  9. Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides

    Authors: Joonhoon Kim, Samuel T. Coradetti, Young‐Mo Kim, Yuqian Gao, Junko Yaegashi, Jeremy Zucker, Nathalie Munoz Munoz, Erika Zink, Kristin Burnum-Johnson, Scott Baker, Blake A. Simmons, Jeffrey M. Skerker, John M. Gladden, Jon Magnuson - Frontiers in Bioengineering and Biotechnology 2021 cited by 63

  10. Biomass pretreatment using deep eutectic solvents from lignin derived phenols

    Authors: Kwang Ho Kim, Tanmoy Dutta, Jian Sun, Blake A. Simmons, Seema Singh - Green Chemistry 2018 cited by 369

  11. Review of advances in the development of laccases for the valorization of lignin to enable the production of lignocellulosic biofuels and bioproducts

    Authors: L.M. Curran, Le Thanh Mai Pham, Kenneth L. Sale, Blake A. Simmons - Biotechnology Advances 2021 cited by 133

  12. Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance

    Authors: Elsayed T. Mohamed, Allison Z. Werner, Davinia Salvachúa, Christine A. Singer, Kiki Szostkiewicz, Manuel Rafael Jiménez-Díaz, Thomas Eng, Mohammad Radi, Blake A. Simmons, Aindrila Mukhopadhyay, Markus J. Herrgård, Steven W. Singer, Gregg T. Beckham, Adam M. Feist - Metabolic Engineering Communications 2020 cited by 131

  13. Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides

    Authors: Samuel T. Coradetti, Dominic Pinel, Gina M. Geiselman, Masakazu Ito, Stephen J. Mondo, Morgann C. Reilly, Yafang Cheng, Štefan Bauer, Igor V. Grigoriev, John M. Gladden, Blake A. Simmons, Rachel B. Brem, Adam P. Arkin, Jeffrey M. Skerker - eLife 2018 cited by 163

  14. Sustainable bioproduction of the blue pigment indigoidine: Expanding the range of heterologous products inR. toruloidesto include non-ribosomal peptides

    Authors: Maren Wehrs, John M. Gladden, Yuzhong Liu, Lukas Platz, Jan‐Philip Prahl, Jadie Moon, Gabriella Papa, Eric Sundström, Gina M. Geiselman, Deepti Tanjore, Jay D. Keasling, Todd Pray, Blake A. Simmons, Aindrila Mukhopadhyay - Green Chemistry 2019 cited by 96

  15. Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

    Authors: Tammi Vesth, Jane Lind Nybo Rasmussen, Sebastian Theobald, Jens C. Frisvad, Thomas Ostenfeld Larsen, Kristian Fog Nielsen, Jakob Blæsbjerg Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John M. Gladden, Pallavi A. Phatale, Morten T. Nielsen, Ellen Kirstine Lyhne, Martin E. Kogle, Kimchi Strasser, Erin McDonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt LaButti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Élodie Drula, Adrian Tsang, Jon Magnuson, Bernard Henrissat, Ad Wiebenga, Blake A. Simmons, Miia Mäkelä, Ronald P. de Vries, Igor V. Grigoriev, Uffe Hasbro Mortensen, Scott Baker, Mikael Rørdam Andersen - Nature Genetics 2018 cited by 235

  16. Short-chain ketone production by engineered polyketide synthases in Streptomyces albus

    Authors: Satoshi Yuzawa, Mona Mirsiaghi, Renee Jocic, Tatsuya Fujii, Fabrice Masson, Veronica T. Benites, Edward E. K. Baidoo, Eric Sundström, Deepti Tanjore, Todd Pray, Anthe George, Ryan Davis, John M. Gladden, Blake A. Simmons, Leonard Katz, Jay D. Keasling - Nature Communications 2018 cited by 93

  17. Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering

    Authors: Thomas Eng, Deepanwita Banerjee, Javier Menasalvas, Yan Chen, Jennifer Gin, Hemant Choudhary, Edward E. K. Baidoo, Jian-Hua Chen, Axel Ekman, Ramu Kakumanu, Yuzhong Liu Diercks, Alex Codik, Carolyn A. Larabell, John M. Gladden, Blake A. Simmons, Jay D. Keasling, Christopher J. Petzold, Aindrila Mukhopadhyay - Cell Reports 2023 cited by 41

  18. Genome-scale and pathway engineering for the sustainable aviation fuel precursor isoprenol production in Pseudomonas putida

    Authors: Deepanwita Banerjee, Ian Sofian Yunus, Xi Wang, Jinho Kim, Jinho Kim, Aparajitha Srinivasan, Russel Menchavez, Yan Chen, Jennifer Gin, Christopher J. Petzold, Héctor García Martín, Jon Magnuson, Paul D. Adams, Blake A. Simmons, Aindrila Mukhopadhyay, Joonhoon Kim, Joonhoon Kim, Taek Soon Lee - Metabolic Engineering 2024 cited by 39

  19. Evaluation of bacterial hosts for conversion of lignin-derived p-coumaric acid to 4-vinylphenol

    Authors: Alberto Rodriguez, Jamie A. Meadows, Ning Sun, Blake A. Simmons, John M. Gladden - Microbial Cell Factories 2021 cited by 27

  20. The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

    Authors: Daniela S. Gerhard, Lukas Wagner, Elise A. Feingold, Carolyn M. Shenmen, Lynette Grouse, Greg Schuler, Steven L. Klein, Susan Old, Rebekah S. Rasooly, Peter J. Good, Mark S. Guyer, Allison M. Peck, Jeffery G. Derge, David J. Lipman, Francis S. Collins, Wonhee Jang, Steven Sherry, Mike Feolo, Leonie Misquitta, Eduardo Lee, Kirill E. Rotmistrovsky, Susan F. Greenhut, Carl F. Schaefer, Kenneth H. Buetow, Tom I. Bonner, David Haussler, Jim Kent, Mark Kiekhaus, Terry Furey, Michael R. Brent, Christa Prange, Kirsten Schreiber, Nicole Shapiro, Narayan Bhat, Ralph F. Hopkins, Florence Hsie, Tom Driscoll, Marcelo B. Soares, T.L. Casavant, Todd E. Scheetz, Michael J Brown-stein, Ted B. Usdin, Toshiyuki Shiraki, Piero Carninci, Yulan Piao, Dawood B. Dudekula, Minoru S.H. Ko, Koichi Kawakami, Yutaka Suzuki, Sumio Sugano, C. E. Gruber, M. Smith, Blake A. Simmons, Troy Moore, Richard Waterman, Stephen L. Johnson, Yijun Ruan, Chia Lin Wei, Sinnakaruppan Mathavan, Preethi H. Gunaratne, Jiaqian Wu, Angela Garcia, Stephen W. Hulyk, Edwin Fuh, Ye Yuan, Anna Sneed, Carla Kowis, Anne V. Hodgson, Donna M. Muzny, John D. McPherson, Richard A. Gibbs, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez, Michelle Whiting, Anup Madari, Alice Young, Keith Wetherby, Steven J Granite, Peggy N Kwong, Charles P. Brinkley, Russell L Pearson, Gerard G. Bouffard, Robert W Blakesly, Eric D. Green, Mark Dickson, Álex Rodríguez, Jane Grimwood, Jeremy Schmutz, R Myers, Yaron S.N. Butterfield, Malachi Griffith, Obi L. Griffith, Martin Krzywinski, Nancy Liao, Ryan Morin, Ryan Morrin and 15 more - Genome Research 2004 cited by 590

  21. A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides

    Authors: Luísa Czamanski Nora, Maren Wehrs, Joonhoon Kim, Jan‐Fang Cheng, Angela Tarver, Blake A. Simmons, Jon Magnuson, Miranda Harmon‐Smith, Rafael Silva‐Rocha, John M. Gladden, Aindrila Mukhopadhyay, Jeffrey M. Skerker, James Kirby - Microbial Cell Factories 2019 cited by 72

  22. Generation of Pseudomonas putida KT2440 Strains with Efficient Utilization of Xylose and Galactose via Adaptive Laboratory Evolution

    Authors: Hyun Gyu Lim, Thomas Eng, Deepanwita Banerjee, Geovanni Alarcon, Andrew K. Lau, Mee‐Rye Park, Blake A. Simmons, Bernhard Ø. Palsson, Steven W. Singer, Aindrila Mukhopadhyay, Adam M. Feist - ACS Sustainable Chemistry & Engineering 2021 cited by 62

  23. In vivo lipidomics using single-cell Raman spectroscopy

    Authors: Huawen Wu, Joanne V. Volponi, Ann E. Oliver, Atul N. Parikh, Blake A. Simmons, Seema Singh - National Academy of Sciences, Proceedings of the National Academy of Sciences 2011 cited by 430

  24. From lignin subunits to aggregates: insights into lignin solubilization

    Authors: Wenwen Zhao, Ling‐Ping Xiao, Guoyong Song, Run‐Cang Sun, Lilin He, Seema Singh, Blake A. Simmons, Gang Cheng - Green Chemistry 2017 cited by 243