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Charles L. Brooks

Active 1983–2025

174
Papers
37,250
Citations
103
h-index
167
i10-index

Citations

Citations per year for Charles L. Brooks1962: 4 citations1970: 1 citations1973: 2 citations1974: 1 citations1979: 1 citations1985: 8 citations1987: 3 citations1988: 14 citations1989: 18 citations1990: 23 citations1991: 44 citations1992: 49 citations1993: 47 citations1994: 56 citations1995: 83 citations1996: 98 citations1997: 136 citations1998: 165 citations1999: 183 citations2000: 199 citations2001: 212 citations2002: 229 citations2003: 289 citations2004: 376 citations2005: 385 citations2006: 439 citations2007: 399 citations2008: 396 citations2009: 482 citations2010: 372 citations2011: 387 citations2012: 328 citations2013: 346 citations2014: 280 citations2015: 301 citations2016: 292 citations2017: 323 citations2018: 248 citations2019: 703 citations2020: 696 citations2021: 774 citations2022: 674 citations2023: 526 citations2024: 874 citations2025: 423 citations2026: 42 citations1963–1969: no citations, so these years are not shown1971–1972: no citations, so these years are not shown1975–1978: no citations, so these years are not shown1980–1984: no citations, so these years are not shown1986: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 4,560 citing papers, 35.2% of this breakdownChina: 945 citing papers, 7.3% of this breakdownGermany: 776 citing papers, 6% of this breakdownUnited Kingdom: 679 citing papers, 5.2% of this breakdownFrance: 579 citing papers, 4.5% of this breakdownIndia: 465 citing papers, 3.6% of this breakdownItaly: 340 citing papers, 2.6% of this breakdownSwitzerland: 317 citing papers, 2.4% of this breakdownJapan: 305 citing papers, 2.4% of this breakdownCanada: 278 citing papers, 2.1% of this breakdownSpain: 246 citing papers, 1.9% of this breakdownSweden: 226 citing papers, 1.7% of this breakdown
0%35.2%Other 25.1%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology53.5%
  • Medicine12.2%
  • Computer Science11.3%
  • Physics and Astronomy5.1%
  • Materials Science3.6%
  • Chemistry3.3%
  • Other11%

Topics

  • Protein Structure and Dynamics14%
  • Enzyme Structure and Function5.9%
  • Computational Drug Discovery Methods5.9%
  • RNA and protein synthesis mechanisms4.4%
  • Spectroscopy and Quantum Chemical Studies3.4%
  • Lipid Membrane Structure and Behavior2.4%
  • Other64%

Coauthors

All papers

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  1. CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field

    Authors: Jumin Lee, Xi Cheng, Jason Swails, Min Sun Yeom, Peter Eastman, Justin A. Lemkul, Shuai Wei, Joshua Buckner, Jong Cheol Jeong, Yifei Qi, Sunhwan Jo, Vijay S. Pande, David A. Case, Charles L. Brooks, Alexander D. MacKerell, Jeffery B. Klauda, Wonpil Im - Journal of Chemical Theory and Computation 2015 cited by 4,325

  2. A modified TIP3P water potential for simulation with Ewald summation

    Authors: D.J. Price, Charles L. Brooks - The Journal of Chemical Physics 2004 cited by 1,676

  3. Detailed analysis of grid-based molecular docking: A case study of CDOCKER - A CHARMm-based MD docking algorithm

    Authors: Guosheng Wu, D. H. Robertson, Charles L. Brooks, Michal Vieth - Journal of Computational Chemistry, J. Comput. Chem. 2003 cited by 1,551

  4. Improved Treatment of the Protein Backbone in Empirical Force Fields

    Authors: Alexander D. MacKerell, Michael Feig, Charles L. Brooks - Journal of the American Chemical Society 2003 cited by 1,010

  5. Parametrization of halogen bonds in the CHARMM general force field: Improved treatment of ligand–protein interactions

    Authors: Ignacio Soteras, Fang-Yu Lin, Kenno Vanommeslaeghe, Justin A. Lemkul, Kira A. Armacost, Charles L. Brooks, Alexander D. MacKerell - Bioorganic & Medicinal Chemistry 2016 cited by 297

  6. Molecular Mechanism for Isoform-Selective Inhibition of Acyl Protein Thioesterases 1 and 2 (APT1 and APT2)

    Authors: Sang Joon Won, Dahvid Davda, Kristin Jansen Labby, Sin Ye Hwang, Rachel Pricer, Jaimeen D. Majmudar, Kira A. Armacost, Laura A. Rodriguez, Christina L. Rodriguez, Fei San Chong, Kristopher A. Torossian, Jasmine Palakurthi, Edward S. Hur, Jennifer L. Meagher, Charles L. Brooks, Jeanne A. Stuckey, Brent R. Martin - ACS Chemical Biology 2016 cited by 110

  7. Deciphering protein evolution and fitness landscapes with latent space models

    Authors: Xinqiang Ding, Zhengting Zou, Charles L. Brooks - Nature Communications 2019 cited by 115

  8. λ-dynamics: A new approach to free energy calculations

    Authors: Xianjun Kong, Charles L. Brooks - The Journal of Chemical Physics 1996 cited by 376

  9. CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed

    Authors: Wonmuk Hwang, Steven L. Austin, Arnaud Blondel, Eric D. Boittier, Stefan Boresch, Matthias Buck, Joshua Buckner, Amedeo Caflisch, Hao-Ting Chang, Xi Cheng, Yeol Kyo Choi, Jhih‐Wei Chu, Michael F. Crowley, Qiang Cui, A. Damjanović, Yuqing Deng, M. Devereux, Xinqiang Ding, Michael Feig, Jiali Gao, David R. Glowacki, James E. Gonzales, Mehdi Bagheri Hamaneh, Edward Harder, Ryan L. Hayes, Jing Huang, Yandong Huang, Phillip S. Hudson, Wonpil Im, Shahidul M. Islam, Wei Jiang, Michael R. Jones, Silvan Käser, Fiona L. Kearns, Nathan R. Kern, Jeffery B. Klauda, Themis Lazaridis, Jinhyuk Lee, Justin A. Lemkul, Xiaorong Liu, Yun Luo, Alexander D. MacKerell, Dan Thomas Major, Markus Meuwly, Kwangho Nam, Lennart Nilsson, Victor Ovchinnikov, Emanuele Paci, Soohyung Park, Richard W. Pastor, Amanda R. Pittman, Carol Beth Post, Samarjeet Prasad, Jingzhi Pu, Yifei Qi, Thenmalarchelvi Rathinavelan, Daniel R. Roe, Benoı̂t Roux, Christopher N. Rowley, Jana Shen, Andrew C. Simmonett, Alexander J. Sodt, Kai Töpfer, Meenu Upadhyay, Arjan van der Vaart, Luis Itza Vazquez-Salazar, Richard M. Venable, Luke Warrensford, H. Lee Woodcock, Yujin Wu, Charles L. Brooks, Bernard R. Brooks, Martin Karplus - The Journal of Physical Chemistry B 2024 cited by 114

  10. Albumin Binding to FcRn: Distinct from the FcRn−IgG Interaction

    Authors: Chaity Chaudhury, Charles L. Brooks, Daniel C. Carter, John M. Robinson, Clark L. Anderson - Biochemistry 2006 cited by 282

  11. Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction

    Authors: Chang-Hwa Chiang, Troy Wymore, Attabey Rodríguez Benítez, Azam Hussain, Janet L. Smith, Charles L. Brooks, Alison R. H. Narayan - National Academy of Sciences, Proceedings of the National Academy of Sciences 2023 cited by 35

  12. Hierarchy of RNA Functional Dynamics

    Authors: Anthony M. Mustoe, Charles L. Brooks, Hashim M. Al‐Hashimi - Annual Review of Biochemistry 2014 cited by 217

  13. Constant‐pH molecular dynamics using continuous titration coordinates

    Authors: Michael S. Lee, Freddie R. Salsbury, Charles L. Brooks - Proteins Structure Function and Bioinformatics 2004 cited by 368

  14. MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology

    Authors: Michael Feig, John Karanicolas, Charles L. Brooks - Journal of Molecular Graphics and Modelling 2004 cited by 887

  15. Stochastic boundary conditions for molecular dynamics simulations of ST2 water

    Authors: Axel T. Brünger, Charles L. Brooks, Martin Karplus - Chemical Physics Letters 1984 cited by 634

  16. Multisite λ Dynamics for Simulated Structure–Activity Relationship Studies

    Authors: Jennifer L. Knight, Charles L. Brooks - Journal of Chemical Theory and Computation 2011 cited by 110

  17. Automated, Accurate, and Scalable Relative Protein–Ligand Binding Free-Energy Calculations Using Lambda Dynamics

    Authors: E. Prabhu Raman, Thomas J. Paul, Ryan L. Hayes, Charles L. Brooks - Journal of Chemical Theory and Computation 2020 cited by 78

  18. Constant pH Molecular Dynamics with Proton Tautomerism

    Authors: Jana Khandogin, Charles L. Brooks - Biophysical Journal 2005 cited by 309

  19. Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing

    Authors: Julia R. Widom, Yuri A. Nedialkov, Victoria Rai, Ryan L. Hayes, Charles L. Brooks, Irina Artsimovitch, Nils G. Walter - Molecular Cell 2018 cited by 85

  20. BLaDE: A Basic Lambda Dynamics Engine for GPU-Accelerated Molecular Dynamics Free Energy Calculations

    Authors: Ryan L. Hayes, Joshua Buckner, Charles L. Brooks - Journal of Chemical Theory and Computation 2021 cited by 52

  21. Structural Basis for Selectivity in Flavin-Dependent Monooxygenase-Catalyzed Oxidative Dearomatization

    Authors: Attabey Rodríguez Benítez, Sara E. Tweedy, Summer A. Baker Dockrey, April L. Lukowski, Troy Wymore, Dheeraj Khare, Charles L. Brooks, Bruce A. Palfey, Janet L. Smith, Alison R. H. Narayan - ACS Catalysis 2019 cited by 41

  22. Molecular Mechanisms of Prolactin and Its Receptor

    Authors: Charles L. Brooks - Endocrine Reviews 2012 cited by 164

  23. Constant pH molecular dynamics of proteins in explicit solvent with proton tautomerism

    Authors: Garrett B. Goh, Benjamin S. Hulbert, Huiqing Zhou, Charles L. Brooks - Proteins Structure Function and Bioinformatics 2013 cited by 131

  24. Adaptive Landscape Flattening Accelerates Sampling of Alchemical Space in Multisite λ Dynamics

    Authors: Ryan L. Hayes, Kira A. Armacost, Jonah Z. Vilseck, Charles L. Brooks - The Journal of Physical Chemistry B 2017 cited by 78