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Fangfang Xia

Active 2006–2025

71
Papers
18,001
Citations
35
h-index
55
i10-index

Citations

Citations per year for Fangfang Xia1988: 1 citations1991: 1 citations1992: 1 citations2000: 2 citations2002: 1 citations2003: 3 citations2008: 4 citations2010: 1 citations2011: 3 citations2012: 29 citations2013: 39 citations2014: 75 citations2015: 79 citations2016: 103 citations2017: 122 citations2018: 153 citations2019: 603 citations2020: 688 citations2021: 765 citations2022: 654 citations2023: 491 citations2024: 833 citations2025: 404 citations2026: 32 citations1989–1990: no citations, so these years are not shown1993–1999: no citations, so these years are not shown2001: no citations, so this year is not shown2004–2007: no citations, so these years are not shown2009: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 1,573 citing papers, 21.4% of this breakdownChina: 985 citing papers, 13.4% of this breakdownGermany: 397 citing papers, 5.4% of this breakdownUnited Kingdom: 367 citing papers, 5% of this breakdownFrance: 265 citing papers, 3.6% of this breakdownIndia: 223 citing papers, 3.1% of this breakdownCanada: 221 citing papers, 3% of this breakdownSpain: 192 citing papers, 2.6% of this breakdownAustralia: 186 citing papers, 2.6% of this breakdownItaly: 163 citing papers, 2.2% of this breakdownDenmark: 149 citing papers, 2% of this breakdownNetherlands: 144 citing papers, 2% of this breakdown
0%21.4%Other 33.7%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology47.8%
  • Environmental Science12.7%
  • Medicine10.7%
  • Agricultural and Biological Sciences8.6%
  • Engineering6.4%
  • Computer Science5.9%
  • Other7.9%

Topics

  • Genomics and Phylogenetic Studies9%
  • Antibiotic Resistance in Bacteria4.8%
  • Bacteriophages and microbial interactions4%
  • Microbial Community Ecology and Physiology3.6%
  • Gut microbiota and health3.4%
  • Microbial Metabolic Engineering and Bioproduction2.4%
  • Other72.8%

Coauthors

All papers

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  1. Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

    Authors: Robert D. Olson, Rida Assaf, Thomas S. Brettin, Neal Conrad, Clark Cucinell, James J. Davis, Donald M. Dempsey, Allan Dickerman, Emily M. Dietrich, Ronald W. Kenyon, Mehmet Kuscuoglu, Elliot J. Lefkowitz, Jian Lu, Dustin Machi, Catherine Macken, Chunhong Mao, Anna Maria Niewiadomska, Marcus Nguyen, Gary J. Olsen, Jamie C. Overbeek, Bruce D. Parrello, Victoria Parrello, Jacob s Porter, Gordon D. Pusch, Maulik Shukla, Indresh Singh, Lucy Stewart, Gene Tan, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Zachary S. Wallace, Andrew S. Warren, Alice R. Wattam, Fangfang Xia, Hyun Seung Yoo, Yun Zhang, Christian M. Zmasek, Richard H. Scheuermann, Rick L. Stevens - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 1,221

  2. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

    Authors: Ross A. Overbeek, Robert Olson, Gordon D. Pusch, Gary J. Olsen, James J. Davis, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Bruce D. Parrello, Maulik Shukla, Veronika Vonstein, Alice R. Wattam, Fangfang Xia, Rick Stevens - Nucleic Acids Research, Nucleic Acids Res. 2013 cited by 4,639

  3. RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

    Authors: Thomas Brettin, James J. Davis, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Gary J. Olsen, Robert Olson, Ross Overbeek, Bruce Parrello, Gordon D. Pusch, Maulik Shukla, James Thomason, Rick Stevens, Veronika Vonstein, Alice R. Wattam, Fangfang Xia - Scientific Reports 2015 cited by 2,897

  4. KBase: The United States Department of Energy Systems Biology Knowledgebase

    Authors: Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry, Nomi L. Harris, Rick Stevens, Sergei Maslov, Paramvir Dehal, Doreen Ware, Fernando Pérez, Shane Canon, Michael W. Sneddon, Matthew Henderson, William J. Riehl, Dan Murphy-Olson, Stephen Y. Chan, Roy T. Kamimura, Sunita Kumari, Meghan M. Drake, Thomas Brettin, Elizabeth M. Glass, Dylan Chivian, Dan Gunter, David J. Weston, Benjamin Allen, Jason K. Baumohl, Aaron A. Best, Ben Bowen, Steven E. Brenner, Christopher Bun, John‐Marc Chandonia, Jer-Ming Chia, Ric Colasanti, Neal Conrad, James J. Davis, Brian H. Davison, Matthew DeJongh, Scott Devoid, Emily Dietrich, Inna Dubchak, Janaka N. Edirisinghe, Gang Fang, José P. Faria, Paul M Frybarger, Wolfgang Gerlach, Mark Gerstein, Annette Greiner, James Gurtowski, Holly L Haun, Fei He, Rashmi Jain, Marcin P. Joachimiak, Kevin Keegan, Shinnosuke Kondo, Vivek Kumar, Miriam Land, Folker Meyer, Marissa Mills, Pavel S. Novichkov, Taeyun Oh, Gary J. Olsen, Robert Olson, Bruce Parrello, Shiran Pasternak, Erik Pearson, Sarah Poon, Gavin A Price, Srividya Ramakrishnan, Priya Ranjan, Pamela C. Ronald, Michael C. Schatz, Samuel M. D. Seaver, Maulik Shukla, Roman A. Sutormin, Mustafa Syed, James Thomason, Nathan Tintle, Daifeng Wang, Fangfang Xia, Hyunseung Yoo, Shinjae Yoo, Dantong Yu - Nature Biotechnology 2018 cited by 1,670

  5. Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

    Authors: Alice R. Wattam, James J. Davis, Rida Assaf, Sébastien Boisvert, Thomas S. Brettin, Christopher Bun, Neal Conrad, Emily M. Dietrich, Terry Disz, Joseph L. Gabbard, Svetlana Gerdes, Christopher S. Henry, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Gary J. Olsen, Daniel E. Murphy-Olson, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla, Veronika Vonstein, Andrew S. Warren, Fangfang Xia, Hyun Seung Yoo, Rick L. Stevens - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 1,710

  6. The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

    Authors: James J. Davis, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, Ralph Butler, Rory Butler, Philippe Chlenski, Neal Conrad, Allan Dickerman, Emily M. Dietrich, Joseph L. Gabbard, Svetlana Gerdes, Andrew Guard, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Marcus Nguyen, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Jamie C. Overbeek, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren, Fangfang Xia, Dawen Xie, Hyun Seung Yoo, Rick Stevens - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 962

  7. Converting tabular data into images for deep learning with convolutional neural networks

    Authors: Yitan Zhu, Thomas Brettin, Fangfang Xia, Alexander Partin, Maulik Shukla, Hyunseung Yoo, Yvonne A. Evrard, James H. Doroshow, Rick Stevens - Scientific Reports 2021 cited by 195

  8. Antimicrobial Resistance Prediction in PATRIC and RAST

    Authors: James J. Davis, Sébastien Boisvert, Thomas Brettin, Ronald W. Kenyon, Chunhong Mao, Robert Olson, Ross Overbeek, John Santerre, Maulik Shukla, Alice R. Wattam, Rebecca Will, Fangfang Xia, Rick Stevens - Scientific Reports 2016 cited by 247

  9. Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae

    Authors: Marcus Nguyen, Thomas Brettin, S. Wesley Long, James M. Musser, Randall J. Olsen, Robert Olson, Maulik Shukla, Rick Stevens, Fangfang Xia, Hyunseung Yoo, James J. Davis - Scientific Reports 2018 cited by 197

  10. Surgical tool classification and localization: results and methods from the MICCAI 2022 SurgToolLoc challenge

    Authors: Aneeq Zia, Max Berniker, Rogerio Garcia Nespolo, Zhang, Xiaorui, Kiran Bhattacharyya, Xi Liu, Ziheng Wang, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Bo Liu, David Austin, Yiheng Wang, Michal Futrega, Jean‐François Puget, Zhenqiang Li, Yoichi Sato, Ryo Fujii, Ryo Hachiuma, Mana Masuda, Hideo Saitô, An Wang, Mengya Xu, Mobarakol Islam, Long Bai, Winnie Pang, Hongliang Ren, Chinedu Innocent Nwoye, Luca Sestini, Nicolas Padoy, Maximilian Nielsen, Samuel Schüttler, Thilo Sentker, Hümeyra Husseini, Ivo M. Baltruschat, Rüdiger Schmitz, René Werner, Aleksandr Matsun, Mugariya Farooq, Numan Saaed, Jose Viera, Mohammad Yaqub, Neil Getty, Fangfang Xia, Zixuan Zhao, Xiaotian Duan, Xing Yao, Ange Lou, Hao Yang, Jintong Han, Jack H. Noble, Noble, Jack, Tamer Abdulbaki Alshirbaji, Nour Aldeen Jalal, Herag Arabian, Ning Ding, Knut Möeller, Weiliang Chen, Quan He, He, Quan, Bilal, Muhammad, Akinosho, Taofeek, Qayyum, Adnan, Caputo, Massimo, Vohra, Hunaid, Loizou, Michael, Ajayi, Anuoluwapo, Berrou, Ilhem, Niyi-Odumosu, Faatihah, Budd, Charlie, Alabi, Oluwatosin, Vercauteren, Tom, Zhao, Ruoxi, Acar, Ayberk, Han, John, Atoum, Jumanh, Qin, Yinhong, Hua, Surong, Ping, Lu, Wu, Wenming, Wei, Rongfeng, Wu, Jinlin, Pang, You, Chen, Zhen, Jaspers, Tim, Yamlahi, Amine, Kalinowski, Piotr, Michael, Dominik, Rädsch, Tim, Hübner, Marco, Danail Stoyanov, Stefanie Speidel, Lena Maier‐Hein, Anthony Jarc, Zhang, Ruxin, Nguyen, Khang Hoang, Nguyen, Anh Quoc, Nguyen, Tam Minh, Tran, Khoi Dinh, Nhat, Minh Nguyen Dang and 56 more - arXiv (Cornell University), CoRR 2023 cited by 26

  11. Molecular Engineering of Aptamer Self-Assemblies Increases in Vivo Stability and Targeted Recognition

    Authors: Fangfang Xia, Axin He, Haitao Zhao, Yang Sun, Qiao Duan, Sk Jahir Abbas, Jianjun Liu, Zeyu Xiao, Weihong Tan - ACS Nano 2021 cited by 79

  12. ExoSD chips for high-purity immunomagnetic separation and high-sensitivity detection of gastric cancer cell-derived exosomes

    Authors: Zixian Yu, Shujing Lin, Fangfang Xia, Yanlei Liu, Di Zhang, Fei Wang, Yanpu Wang, Qichao Li, Jiaqi Niu, Chengxi Cao, Daxiang Cui, Nengquan Sheng, Jiazi Ren, Zhigang Wang, Di Chen, Zhigang Wang, Di Chen - Biosensors and Bioelectronics 2021 cited by 72

  13. A tumor microenvironment responsive biodegradable CaCO3/MnO2- based nanoplatform for the enhanced photodynamic therapy and improved PD-L1 immunotherapy

    Authors: Yanlei Liu, Yun‐Xiang Pan, Wen Cao, Fangfang Xia, Bin Liu, Jiaqi Niu, Gabriel Alfranca, Xiyang Sun, Lijun Ma, Jesús M. de la Fuente, Jie Song, Jian Ni, Daxiang Cui - Theranostics 2019 cited by 169

  14. Inhibition of IKKβ/NF-κB signaling facilitates tendinopathy healing by rejuvenating inflamm-aging induced tendon-derived stem/progenitor cell senescence

    Authors: Chongyang Wang, Zhekun Zhou, Wei Song, Zhuochang Cai, Zhenyu Ding, Daoyun Chen, Fangfang Xia, Yaohua He - Molecular Therapy — Nucleic Acids 2021 cited by 49

  15. Predicting tumor cell line response to drug pairs with deep learning

    Authors: Fangfang Xia, Maulik Shukla, Thomas S. Brettin, Cristina Garcia-Cardona, Judith D. Cohn, Jonathan E. Allen, Sergei Maslov, Susan L. Holbeck, James H. Doroshow, Yvonne A. Evrard, Eric A. Stahlberg, Rick L. Stevens - BMC Bioinformatics, BMC Bioinform. 2018 cited by 134

  16. Population Genomic Analysis of 1,777 Extended-Spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Isolates, Houston, Texas: Unexpected Abundance of Clonal Group 307

    Authors: S. Wesley Long, Randall J. Olsen, Todd N. Eagar, Stephen B. Beres, Picheng Zhao, James J. Davis, Thomas Brettin, Fangfang Xia, James M. Musser - mBio 2017 cited by 157

  17. PATRIC as a unique resource for studying antimicrobial resistance

    Authors: Dionysios A. Antonopoulos, Rida Assaf, Ramy Karam Aziz, Thomas S. Brettin, Christopher Bun, Neal Conrad, James J. Davis, Emily M. Dietrich, Terry Disz, Svetlana Gerdes, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, John Santerre, Maulik Shukla, Rick L. Stevens, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren, Alice R. Wattam, Fangfang Xia, Hyun Seung Yoo - Briefings in Bioinformatics, Briefings Bioinform. 2017 cited by 140

  18. Recovering complete and draft population genomes from metagenome datasets

    Authors: Naseer Sangwan, Fangfang Xia, Jack A. Gilbert - Microbiome 2016 cited by 269

  19. AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing

    Authors: Tanmoy Bhattacharya, Thomas Brettin, James H. Doroshow, Yvonne A. Evrard, Emily J. Greenspan, Amy L. Gryshuk, Thuc Hoang, Carolyn B. Lauzon, Dwight V. Nissley, Lynne Penberthy, Eric Stahlberg, Rick Stevens, Fred Streitz, Georgia D. Tourassi, Fangfang Xia, George Zaki - Frontiers in Oncology 2019 cited by 42

  20. CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research

    Authors: Justin M. Wozniak, Rajeev Jain, Prasanna Balaprakash, Jonathan Ozik, Nicholson T. Collier, John Bauer, Fangfang Xia, Thomas S. Brettin, Rick Stevens, Jamaludin Mohd-Yusof, Cristina Garcia-Cardona, Brian Van Essen, Matthew Baughman - BMC Bioinformatics, BMC Bioinform. 2018 cited by 84

  21. Scalable Reinforcement-Learning-Based Neural Architecture Search for Cancer Deep Learning Research

    Authors: Prasanna Balaprakash, Romain Egele, Misha Salim, Stefan M. Wild, Venkatram Vishwanath, Fangfang Xia, Tom Brettin, Rick Stevens - Conference for High Performance Computing, SC 2019 cited by 35

  22. Matrix metallopeptidase 2 targeted delivery of gold nanostars decorated with IR-780 iodide for dual-modal imaging and enhanced photothermal/photodynamic therapy

    Authors: Fangfang Xia, Jiaqi Niu, Yuping Hong, Chenlu Li, Wen Cao, Lirui Wang, Wenxiu Hou, Yanlei Liu, Daxiang Cui - Acta Biomaterialia 2019 cited by 78

  23. MnO2@Ce6-loaded mesenchymal stem cells as an “oxygen-laden guided-missile” for the enhanced photodynamic therapy on lung cancer

    Authors: Wen Cao, Bin Liu, Fangfang Xia, Meng Duan, Yuping Hong, Jiaqi Niu, Lirui Wang, Yanlei Liu, Can Li, Daxiang Cui - Nanoscale 2019 cited by 77

  24. Assemblathon 1: A competitive assessment of de novo short read assembly methods

    Authors: Dent Earl, Keith Bradnam, John St. John, Aaron E. Darling, Dawei Lin, Joseph Fass, Hung On Ken Yu, Vince Buffalo, Daniel R. Zerbino, Mark Diekhans, Ngan Nguyen, Pramila Ariyaratne, Wing‐Kin Sung, Zemin Ning, Matthias Haimel, Jared T. Simpson, Nuno A. Fonseca, İnanç Birol, Roderick Docking, Isaac Ho, Daniel S. Rokhsar, Rayan Chikhi, Dominique Lavenier, Guillaume Chapuis, Delphine Naquin, Nicolas Maillet, Michael C. Schatz, David R. Kelley, Adam M. Phillippy, Sergey Koren, Shiaw‐Pyng Yang, Wei Wu, Wen‐Chi Chou, Anuj Srivastava, Timothy I. Shaw, J. Graham Ruby, Peter Skewes-Cox, Miguel Betegon, Michelle Dimon, Victor Solovyev, Igor Seledtsov, Petr Kosarev, Denis Vorobyev, Ricardo H. Ramírez-González, Richard M. Leggett, Dan MacLean, Fangfang Xia, Ruibang Luo, Zhenyu Li, Yinlong Xie, Binghang Liu, Sante Gnerre, Iain MacCallum, Dariusz Przybylski, Filipe J. Ribeiro, Shuangye Yin, Ted Sharpe, Giles Hall, Paul Kersey, Richard Durbin, Shaun D. Jackman, Jarrod Chapman, Xiaoqiu Huang, Joseph L. DeRisi, Mario Cáccamo, Yingrui Li, David B. Jaffe, Richard E. Green, David Haussler, Ian Korf, Benedict Paten - Genome Research 2011 cited by 539