Daniel S. Rokhsar

Active 1987–2025

133
Papers
70,663
Citations
102
h-index
131
i10-index

Citations

Citations per year for Daniel S. Rokhsar1984: 2 citations1986: 1 citations1987: 4 citations1988: 27 citations1989: 14 citations1990: 4 citations1991: 5 citations1992: 2 citations1993: 6 citations1994: 4 citations1995: 3 citations1996: 7 citations1997: 8 citations1998: 17 citations1999: 52 citations2000: 71 citations2001: 63 citations2002: 79 citations2003: 197 citations2004: 259 citations2005: 318 citations2006: 221 citations2007: 299 citations2008: 501 citations2009: 641 citations2010: 714 citations2011: 774 citations2012: 715 citations2013: 706 citations2014: 839 citations2015: 844 citations2016: 772 citations2017: 777 citations2018: 631 citations2019: 1,767 citations2020: 1,653 citations2021: 1,621 citations2022: 1,246 citations2023: 869 citations2024: 1,351 citations2025: 504 citations2026: 28 citations1985: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 6,386 citing papers, 24.6% of this breakdownChina: 3,093 citing papers, 11.9% of this breakdownGermany: 1,639 citing papers, 6.3% of this breakdownUnited Kingdom: 1,628 citing papers, 6.3% of this breakdownFrance: 1,283 citing papers, 5% of this breakdownCanada: 1,026 citing papers, 4% of this breakdownJapan: 931 citing papers, 3.6% of this breakdownAustralia: 857 citing papers, 3.3% of this breakdownSpain: 706 citing papers, 2.7% of this breakdownItaly: 610 citing papers, 2.4% of this breakdownIndia: 552 citing papers, 2.1% of this breakdownSweden: 445 citing papers, 1.7% of this breakdown
0%24.6%Other 26.1%

Fields

  • Biochemistry, Genetics and Molecular Biology46.8%
  • Agricultural and Biological Sciences25.9%
  • Environmental Science5.9%
  • Medicine3.4%
  • Earth and Planetary Sciences3%
  • Physics and Astronomy2.4%
  • Other12.6%

Topics

  • Genomics and Phylogenetic Studies7.3%
  • Chromosomal and Genetic Variations3.7%
  • Plant Molecular Biology Research2.5%
  • Photosynthetic Processes and Mechanisms2.2%
  • Genetic Mapping and Diversity in Plants and Animals2.2%
  • Microbial Community Ecology and Physiology2.1%
  • Other80%

Coauthors

All papers

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  1. Phytozome: a comparative platform for green plant genomics

    Authors: , , , , , , , , , , - Nucleic Acids Research, Nucleic Acids Res. 2011 cited by 5,762

  2. Ancient gene linkages support ctenophores as sister to other animals

    Authors: , , , , , - Nature 2023 cited by 400

  3. Genome sequence of the palaeopolyploid soybean

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Navdeep Gill, Trupti Joshi, Marc Libault, Anand Sethuraman, Xuecheng Zhang, Kazuo Shinozaki, Henry T. Nguyen, Rod A. Wing, Perry B. Cregan, James E. Specht, Jane Grimwood, Daniel S. Rokhsar, Gary Stacey, Randy C. Shoemaker, Scott A. Jackson - Nature 2010 cited by 4,635

  4. The Sorghum bicolor genome and the diversification of grasses

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Michael Freeling, Alan R. Gingle, C T Hash, Beat Keller, Patricia E. Klein, Stephen Kresovich, Maureen C. McCann, Ray Ming, Daniel G. Peterson, Mehboob‐ur‐ Rahman, Doreen Ware, Peter Westhoff, Klaus Mayer, Joachim Messing, Daniel S. Rokhsar - Nature 2009 cited by 3,240

  5. Genomics of the origin and evolution of Citrus

    Authors: , , , , , , , , , , , , , , , , , - Nature 2018 cited by 934

  6. The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

    Authors: , , , , , , , , , , , , - National Academy of Sciences, Proceedings of the National Academy of Sciences 2008 cited by 891

  7. Deeply conserved synteny resolves early events in vertebrate evolution

    Authors: , , , , , , , , , , , , , , - Nature Ecology & Evolution 2020 cited by 400

  8. Community structure and metabolism through reconstruction of microbial genomes from the environment

    Authors: , , , , , , , , , - Nature 2004 cited by 2,450

  9. Deeply conserved synteny and the evolution of metazoan chromosomes

    Authors: , , , , , , , , , , , , - Science Advances 2022 cited by 217

  10. Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

    Authors: , , , , , , , , , , , , - Genome Research 2016 cited by 874

  11. Genome evolution in the allotetraploid frog Xenopus laevis

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Joseph W. Carlson, Tsutomu Kinoshita, Yuko Ohta, Shuuji Mawaribuchi, Jerry Jenkins, Jane Grimwood, Jeremy Schmutz, Therese Mitros, Sahar V. Mozaffari, Yutaka Suzuki, Yoshikazu Haramoto, Takamasa Yamamoto, Chiyo Takagi, Rebecca Heald, Kelly E. Miller, Christian Haudenschild, Jacob O. Kitzman, Takuya Nakayama, Yumi Izutsu, Jacques Robert, Joshua D. Fortriede, Kevin A. Burns, Vaneet Lotay, Kamran Karimi, Y. Yasuoka, Darwin S. Dichmann, Martin F. Flajnik, Douglas W. Houston, Jay Shendure, Louis DuPasquier, Peter D. Vize, Aaron M. Zorn, Michihiko Ito, Edward M. Marcotte, John B. Wallingford, Yuzuru Ito, Makoto Asashima, Naoto Ueno, Yoichi Matsuda, Gert Jan C. Veenstra, Asao Fujiyama, Richard M. Harland, Masanori Taira, Daniel S. Rokhsar - Nature 2016 cited by 1,058

  12. Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

    Authors: , , , , , , , , , , , , , , , , , , - Science 2007 cited by 1,606

  13. A chromosome-based draft sequence of the hexaploid bread wheat ( Triticum aestivum ) genome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Fuminori Kobayashi, Takeshi Itoh, Takashi Matsumoto, Hiroaki Sakai, Tsuyoshi Tanaka, Jianzhong Wu, Yasunari Ogihara, Hirokazu Handa, P. Ron Maclachlan, Andrew Sharpe, Darrin Klassen, David Edwards, Jacqueline Batley, Odd-Arne Olsen, Simen R. Sandve, Sigbjørn Lien, Burkhard Steuernagel, Brande B. H. Wulff, Mario Cáccamo, Sarah Ayling, Ricardo H. Ramírez-González, Bernardo Clavijo, Jonathan Wright, Matthias Pfeifer, M. Spannagl, Mihaela Martis, Martin Mascher, Jarrod Chapman, Jesse Poland, Uwe Scholz, Kerrie Barry, Robbie Waugh, Daniel S. Rokhsar, Gary J. Muehlbauer, Nils Stein, Heidrun Gundlach, Matthias Zytnicki, Véronique Jamilloux, Hadi Quesneville, Thomas Wicker, Primetta Faccioli, Moreno Colaiacovo, A. M. Stanca, Hikmet Budak, Luigi Cattivelli, Natasha Glover, Lise Pingault, Etienne Paux, Sapna Sharma, R. Appels, M. Bellgard, Brett Chapman, Thomas Nußbaumer, Kai Christian Bader, Hélène Rimbert, Shichen Wang, R. E. Knox, Andrzej Kilian, Michaël Alaux, Françoise Alfama, L.J. Couderc, Nicolas Guilhot, Claire Viseux, Mikaël Loaec, Beat Keller, Sébastien Praud - Science 2014 cited by 1,647

  14. The Phaeodactylum genome reveals the evolutionary history of diatom genomes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Jérôme Fournet, Miyoshi Haruta, Marie J. J. Huysman, Bethany D. Jenkins, Kateřina Jiroutová, Richard E. Jorgensen, Yolaine Joubert, Aaron Kaplan, Nils Kröger, Peter G. Kroth, Julie La Roche, Erica Lindquist, Markus Lommer, Véronique Martin‐Jézéquel, Pascal Jean Lopez, Susan Lucas, Manuela Mangogna, Karen McGinnis, Linda Medlin, Anton Montsant, Marie-Pierre Oudot–Le Secq, Carolyn A. Napoli, Miroslav Obornı́k, Micaela S. Parker, Jean‐Louis Petit, Betina M. Porcel, Nicole Poulsen, Matthew Robison, Leszek Rychlewski, Tatiana A. Rynearson, Jeremy Schmutz, Harris Shapiro, Magali Siaut, Michele S. Stanley, Michael R. Sussman, Alison R. Taylor, Assaf Vardi, Peter von Dassow, Wim Vyverman, Anusuya Willis, Lucjan Wyrwicz, Daniel S. Rokhsar, Jean Weissenbach, E. Virginia Armbrust, Beverley R. Green, Yves Van de Peer, Igor V. Grigoriev - Nature 2008 cited by 1,699

  15. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Xu Tan, Haibao Tang, Chunming Xu, Jinpeng Wang, Zining Wang, Dong Zhang, Lan Zhang, Hamid Ashrafi, Frank Bedon, John Bowers, Curt L. Brubaker, Peng W. Chee, Sayan Das, Alan R. Gingle, Candace H. Haigler, David Harker, Lúcia Vieira Hoffmann, Ran Hovav, D. C. Jones, Cornelia Lemke, Shahid Mansoor, Mehboob‐ur‐ Rahman, Lisa N. Rainville, Aditi Rambani, Umesh K. Reddy, Junkang Rong, Yehoshua Saranga, Brian E. Scheffler, Jodi Scheffler, David M. Stelly, Barbara A. Triplett, Allen Van Deynze, Maité F. S. Vaslin, Vijay N. Waghmare, Sally A. Walford, Robert Wright, Essam A. Zaki, Tianzhen Zhang, Elizabeth S. Dennis, Klaus Mayer, Daniel G. Peterson, Daniel S. Rokhsar, Xiyin Wang, Jeremy Schmutz - Nature 2012 cited by 1,459

  16. Ancient hybridizations among the ancestral genomes of bread wheat

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Parveen Chhuneja, Nagendra Kumar Singh, Jitendra P. Khurana, Eduard Akhunov, Frédéric Choulet, Adriana Alberti, Valérie Barbe, Patrick Wincker, Hiroyuki Kanamori, Fuminori Kobayashi, Takeshi Itoh, Takashi Matsumoto, Hiroaki Sakai, Tsuyoshi Tanaka, Jianzhong Wu, Yasunari Ogihara, Hirokazu Handa, P. Ron Maclachlan, Andrew Sharpe, Darrin Klassen, David Edwards, Jacqueline Batley, Sigbjørn Lien, Mario Cáccamo, Sarah Ayling, Ricardo H. Ramírez-González, Bernardo Clavijo, Jonathan Wright, Mihaela Martis, Martin Mascher, Jarrod Chapman, Jesse Poland, Uwe Scholz, Kerrie Barry, Robbie Waugh, Daniel S. Rokhsar, Gary J. Muehlbauer, Nils Stein, Heidrun Gundlach, Matthias Zytnicki, Véronique Jamilloux, Hadi Quesneville, Thomas Wicker, Primetta Faccioli, Moreno Colaiacovo, A. M. Stanca, Hikmet Budak, Luigi Cattivelli, Natasha Glover, Lise Pingault, Etienne Paux, Sapna Sharma, R. Appels, M. Bellgard, Brett Chapman, Thomas Nussbaumer, Kai Christian Bader, Hélène Rimbert, Shichen Wang, R. E. Knox, Andrzej Kilian, Michaël Alaux, Françoise Alfama, L.J. Couderc, Nicolas Guilhot, Claire Viseux, Mikaël Loaec, Beat Keller, Sébastien Praud - Science 2014 cited by 839

  17. Suboptimization of developmental enhancers

    Authors: , , , , , - Science 2015 cited by 361

  18. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , David S. Horner, Rachele Falchi, Susan Lucas, Erica Mica, Jonathan Maldonado, Barbara Lazzari, Douglas G. Bielenberg, Raul Pirona, Mara Miculan, Abdelali Bara­kat, Raffaele Testolin, Alessandra Stella, Stefano Tartarini, P. Tonutti, Pere Arús, Ariel Orellana, Christina E. Wells, Dorrie Main, G. Vizzotto, Hermán Silva, Francesco Salamini, Jeremy Schmutz, Michele Morgante, Daniel S. Rokhsar - Nature Genetics 2013 cited by 1,206

  19. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , W. Todd Miller, William McGinnis, Harris Shapiro, Robert Tjian, Igor V. Grigoriev, Daniel S. Rokhsar - Nature 2008 cited by 1,172

  20. The genome of Eucalyptus grandis

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Ting Li, Lieven Sterck, Kevin Vanneste, Florent Murat, Marçal Soler, Hélène San Clemente, Mohamed Najib Saïdi, Hua Wang, Christophe Dunand, Charles A. Hefer, Erich Bornberg‐Bauer, Anna R. Kersting, Kelly Vining, Vindhya Amarasinghe, Martin Ranik, Sushma Naithani, Justin Elser, Alexander E. Boyd, Aaron Liston, Joseph W. Spatafora, Palitha Dharmwardhana, Rajani Raja, Christopher M. Sullivan, Elisson Romanel, Márcio Alves‐Ferreira, Carsten Külheim, William J. Foley, Víctor Carocha, Jorge A. P. Paiva, David Kudrna, Sérgio Hermínio Brommonschenkel, Giancarlo Pasquali, Margaret Byrne, Philippe Rigault, Josquin Tibbits, Antanas Spokevicius, Rebecca C. Jones, Dorothy A. Steane, René E. Vaillancourt, BM Potts, Fourie Joubert, Kerrie Barry, Γεώργιος Παππάς, Steven H. Strauss, Pankaj Jaiswal, Jacqueline Grima‐Pettenati, Jérôme Salse, Yves Van de Peer, Daniel S. Rokhsar, Jeremy Schmutz - Nature 2014 cited by 997

  21. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , François Luro, Chunxian Chen, William G. Farmerie, Brian Desany, Chinnappa D. Kodira, Mohammed Mohi-Ud-Din, Tim Harkins, Karin M. Fredrikson, Paul Burns, Alexandre Lomsadze, Mark Borodovsky, Giuseppe Reforgiato, Juliana Freitas‐Astúa, Françis Quétier, Luís Navarro, Mikeal L. Roose, Patrick Wincker, Jeremy Schmutz, Michele Morgante, Marcos Antônio Machado, Manuel Talón, Olivier Jaillon, Patrick Ollitrault, Frederick G. Gmitter, Daniel S. Rokhsar - Nature Biotechnology 2014 cited by 724

  22. Reference genome sequence of the model plant Setaria

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Andrew N. Doust, Gerald A. Tuskan, Daniel S. Rokhsar, Katrien M. Devos - Nature Biotechnology 2012 cited by 986

  23. The octopus genome and the evolution of cephalopod neural and morphological novelties

    Authors: , , , , , , , , - Nature 2015 cited by 676

  24. Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Holly Baden, Justin Powell, Gustavo Glusman, Lee Rowen, Leroy Hood, Yongjun Tan, Greg Elgar, Trevor Hawkins, Byrappa Venkatesh, Daniel S. Rokhsar, Sydney Brenner - Science 2002 cited by 1,627