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Antonis Rokas

Active 2000–2025

179
Papers
27,434
Citations
86
h-index
167
i10-index

Citations

Citations per year for Antonis Rokas1992: 2 citations1993: 1 citations1994: 1 citations2000: 4 citations2001: 13 citations2002: 7 citations2003: 17 citations2004: 77 citations2005: 100 citations2006: 134 citations2007: 147 citations2008: 187 citations2009: 204 citations2010: 205 citations2011: 218 citations2012: 179 citations2013: 266 citations2014: 303 citations2015: 272 citations2016: 257 citations2017: 258 citations2018: 291 citations2019: 813 citations2020: 900 citations2021: 972 citations2022: 789 citations2023: 620 citations2024: 1,165 citations2025: 566 citations2026: 20 citations1995–1999: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,124 citing papers, 25% of this breakdownChina: 1,073 citing papers, 8.6% of this breakdownUnited Kingdom: 806 citing papers, 6.4% of this breakdownGermany: 766 citing papers, 6.1% of this breakdownFrance: 604 citing papers, 4.8% of this breakdownCanada: 507 citing papers, 4.1% of this breakdownSpain: 424 citing papers, 3.4% of this breakdownAustralia: 349 citing papers, 2.8% of this breakdownNetherlands: 309 citing papers, 2.5% of this breakdownSweden: 273 citing papers, 2.2% of this breakdownBrazil: 267 citing papers, 2.1% of this breakdownJapan: 263 citing papers, 2.1% of this breakdown
0%25%Other 29.9%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology49.1%
  • Agricultural and Biological Sciences19.5%
  • Medicine14.3%
  • Environmental Science4.3%
  • Earth and Planetary Sciences3.5%
  • Neuroscience3.4%
  • Other5.9%

Topics

  • Genomics and Phylogenetic Studies8.5%
  • Genetic diversity and population structure4.2%
  • Plant Pathogens and Fungal Diseases3.5%
  • Mycorrhizal Fungi and Plant Interactions2.7%
  • Fungal and yeast genetics research2.5%
  • Fungal Biology and Applications2.3%
  • Other76.3%

Coauthors

All papers

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  1. ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference

    Authors: Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas - PLoS Biology 2020 cited by 739

  2. Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

    Authors: Xing‐Xing Shen, Dana A. Opulente, Jacek Kominek, Xiaofan Zhou, Jacob L. Steenwyk, Kelly V. Buh, Max A. B. Haase, Jennifer H. Wisecaver, Mingshuang Wang, Drew T. Doering, James T. Boudouris, Rachel M. Schneider, Quinn K. Langdon, Moriya Ohkuma, Rikiya Endoh, Masako Takashima, Ri‐Ichiroh Manabe, Neža Čadež, Diego Libkind, Carlos A. Rosa, Jeremy DeVirgilio, Amanda Beth Hulfachor, Marizeth Groenewald, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas - Cell 2018 cited by 725

  3. A genome-scale phylogeny of the kingdom Fungi

    Authors: Yuanning Li, Jacob L. Steenwyk, Ying Chang, Yan Wang, Timothy Y. James, Jason Stajich, Joseph W. Spatafora, Marizeth Groenewald, Casey W. Dunn, Chris Todd Hittinger, Xing‐Xing Shen, Antonis Rokas - Current Biology 2021 cited by 374

  4. The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

    Authors: Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Ángel T. Martı́nez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M. Coutinho, Ronald P. de Vries, Patrícia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Paweł Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo, Kurt LaButti, Luis Larrondo, Erika Lindquist, Albee Y. Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. McLaughlin, Ingo Morgenstern, Emanuelle Morin, Claude Murat, László G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz‐Dueñas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz J. St John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy F. Young, Antonio G. Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev, David S. Hibbett - Science 2012 cited by 1,824

  5. Incongruence in the phylogenomics era

    Authors: Jacob L. Steenwyk, Yuanning Li, Xiaofan Zhou, Xing‐Xing Shen, Antonis Rokas - Nature Reviews Genetics 2023 cited by 242

  6. Evolution of the human pathogenic lifestyle in fungi

    Authors: Antonis Rokas - Nature Microbiology 2022 cited by 228

  7. The influence of evolutionary history on human health and disease

    Authors: Mary Lauren Benton, Abin Abraham, Abigail L. LaBella, Patrick Abbot, Antonis Rokas, John A. Capra - Nature Reviews Genetics 2021 cited by 303

  8. PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data

    Authors: Jacob L. Steenwyk, Thomas J. Buida, Abigail L. Labella, Yuanning Li, Xing-Xing Shen, Antonis Rokas - Bioinformatics, Bioinform. 2021 cited by 222

  9. The triple helix of collagens – an ancient protein structure that enabled animal multicellularity and tissue evolution

    Authors: Aaron L. Fidler, Sergei P. Boudko, Antonis Rokas, Billy G. Hudson - Journal of Cell Science 2018 cited by 219

  10. Comparative genomics of biotechnologically important yeasts

    Authors: Robert Riley, Sajeet Haridas, Kenneth H. Wolfe, Mariana Lopes, Chris Todd Hittinger, Markus Göker, Asaf Salamov, Jennifer H. Wisecaver, Tanya M. Long, Christopher H. Calvey, Andrea Aerts, Kerrie Barry, Cindy Choi, Alicia Clum, Aisling Y. Coughlan, Shweta Deshpande, Alexander Douglass, Sara J. Hanson, Hans‐Peter Klenk, Kurt LaButti, Alla Lapidus, Erika Lindquist, Anna Lipzen, Jan P. Meier‐Kolthoff, Robin A. Ohm, Robert Otillar, Jasmyn Pangilinan, Peng Yi, Antonis Rokas, Carlos A. Rosa, Carmen Scheuner, Andriy А. Sibirny, Jason C. Slot, J. Benjamin Stielow, Hui Sun, Cletus P. Kurtzman, Meredith Blackwell, Igor V. Grigoriev, Thomas W. Jeffries - National Academy of Sciences, Proceedings of the National Academy of Sciences 2016 cited by 397

  11. Risk factors and outcome of pulmonary aspergillosis in critically ill coronavirus disease 2019 patients—a multinational observational study by the European Confederation of Medical Mycology

    Authors: Juergen Prattes, Joost Wauters, Daniele Roberto Giacobbe, Jon Salmanton‐García, Johan Maertens, Marc Bourgeois, Marijke Reynders, Lynn Rutsaert, Niels Van Regenmortel, Piet Lormans, Simon Feys, Alexander C. Reisinger, Oliver A. Cornely, Tobias Lahmer, Maricela Valerio, Laurence Delhaès, Kauser Jabeen, Joerg Steinmann, Mathilde Chamula, Matteo Bassetti, Stefan Hatzl, Riina Rautemaa‐Richardson, Philipp Koehler, Katrien Lagrou, Martin Hoenigl, Yves Debaveye, Marisa H. Miceli, Jean‐Jacques Tudesq, Gregor Paul, Robert Krause, Marina Linhofer, Jonas Frost, Peter Zechner, Matthias Kochanek, Philipp Eller, Jeffrey D. Jenks, Sara Volpi, Anne‐Pauline Bellanger, P. Lewis White, Gustavo H. Goldman, Paul Bowyer, Antonis Rokas, Sara Gago, Paolo Pelosi, Chiara Robba, Jean‐Pierre Gangneux, Cornelia Lass-Floerl, Marina Machado, Patricia Muñóz - Clinical Microbiology and Infection 2021 cited by 230

  12. A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina

    Authors: Marizeth Groenewald, Chris Todd Hittinger, Konstanze Bensch, Dana A. Opulente, Xing‐Xing Shen, Yàn Li, Chao Liu, Abigail L. LaBella, Xiaofan Zhou, Savitree Limtong, Sasitorn Jindamorakot, Paula Gonçalves, Vincent Robert, Kenneth H. Wolfe, Carlos A. Rosa, Teun Boekhout, Neža Čadež, Gábor Péter, José Paulo Sampaio, Marc‐André Lachance, Andrey Yurkov, Heide‐Marie Daniel, Masako Takashima, Kyria Boundy‐Mills, Diego Libkind, Keita Aoki, Takashi Sugita, Antonis Rokas - Studies in Mycology 2023 cited by 120

  13. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

    Authors: Nicole King, M. Jody Westbrook, Susan L. Young, Alan Kuo, Monika Abedin, Jarrod Chapman, Stephen R. Fairclough, Uffe Hellsten, Yoh Isogai, Ivica Letunić, Michael T. Marr, David Pincus, Nicholas H. Putnam, Antonis Rokas, Kevin J. Wright, Richard Zuzow, William Dirks, Matthew C. Good, David Goodstein, Derek Lemons, Wanqing Li, Jessica B. Lyons, Andrea Morris, Scott Nichols, Daniel J. Richter, Asaf Salamov, JGI Sequencing, Peer Bork, Wendell A. Lim, Gerard Manning, W. Todd Miller, William McGinnis, Harris Shapiro, Robert Tjian, Igor V. Grigoriev, Daniel S. Rokhsar - Nature 2008 cited by 1,172

  14. Contentious relationships in phylogenomic studies can be driven by a handful of genes

    Authors: Xing‐Xing Shen, Chris Todd Hittinger, Antonis Rokas - Nature Ecology & Evolution 2017 cited by 586

  15. Toward a Fully Resolved Fungal Tree of Life

    Authors: Timothy Y. James, Jason Stajich, Chris Todd Hittinger, Antonis Rokas - Annual Review of Microbiology 2020 cited by 258

  16. HGT is widespread in insects and contributes to male courtship in lepidopterans

    Authors: Yang Li, Zhiguo Liu, Chao Liu, Zheyi Shi, Lan Pang, Chuzhen Chen, Yun Chen, Ronghui Pan, Wenwu Zhou, Xue‐Xin Chen, Antonis Rokas, Jianhua Huang, Xing‐Xing Shen - Cell 2022 cited by 166

  17. Inferring ancient divergences requires genes with strong phylogenetic signals

    Authors: Leonidas Salichos, Antonis Rokas - Nature, Nat. 2013 cited by 697

  18. Biosynthetic gene clusters and the evolution of fungal chemodiversity

    Authors: Antonis Rokas, Matthew E. Mead, Jacob L. Steenwyk, Huzefa A. Raja, Nicholas H. Oberlies - Natural Product Reports 2020 cited by 184

  19. Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts

    Authors: Dana A. Opulente, Abigail L. LaBella, Marie‐Claire Harrison, John F. Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob L. Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R. Miller, Quinn K. Langdon, Margarida Silva, Carla Gonçalves, Emily J. Ubbelohde, Yuanning Li, Kelly V. Buh, Martin Jarzyna, Max A. B. Haase, Carlos A. Rosa, Neža Čadež, Diego Libkind, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P. Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiaofan Zhou, Xing‐Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger - Science 2024 cited by 125

  20. Extensive loss of cell cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

    Authors: Jacob L. Steenwyk, Dana A. Opulente, Jacek Kominek, Xing‐Xing Shen, Xiaofan Zhou, Abigail L. LaBella, Noah P. Bradley, Brandt F. Eichman, Neža Čadež, Diego Libkind, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas - PLoS Biology 2019 cited by 195

  21. PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

    Authors: Alexander K. Tice, David Žihala, Tomáš Pánek, Robert E. Jones, Eric D. Salomaki, Serafim Nenarokov, Fabien Burki, Marek Eliáš, Laura Eme, Andrew J. Roger, Antonis Rokas, Xing‐Xing Shen, Jürgen F. H. Strassert, Martin Kolísko, Matthew W. Brown - PLoS Biology 2021 cited by 141

  22. Genetic effects on the timing of parturition and links to fetal birth weight

    Authors: Pol Solé-Navais, Christopher Flatley, Valgerður Steinthórsdóttir, Marc Vaudel, Julius Juodakis, Jing Chen, Triin Laisk, Abigail L. LaBella, David Westergaard, Jonas Bačelis, Ben Brumpton, Line Skotte, Maria Carolina Borges, Øyvind Helgeland, Anubha Mahajan, Matthias Wielscher, Frederick T. J. Lin, Catherine Briggs, Carol A. Wang, Gunn-Helen Moen, Robin N. Beaumont, Jonathan P. Bradfield, Abin Abraham, Guðmar Þorleifsson, Maiken E. Gabrielsen, Sisse Rye Ostrowski, Dominika Modzelewska, Ellen A. Nøhr, Elina Hyppönen, Amit Srivastava, Octavious Talbot, Catherine Allard, Scott M. Williams, Ramkumar Menon, Beverley M. Shields, Garðar Sveinbjörnsson, Huan Xu, Mads Melbye, William L. Lowe, Luigi Bouchard, Emily Oken, Ole Birger Pedersen, Daníel F. Guðbjartsson, Christian Erikstrup, Erik Sørensen, Mark I. McCarthy, Rolv T. Lie, Kari Teramo, Mikko Hallman, Thorhildur Juliusdottir, Hakon Hakonarson, Henrik Ullum, Andrew T. Hattersley, Line Sletner, Mario Merialdi, Sheryl L. Rifas‐Shiman, Þóra Steingrímsdóttir, Denise Scholtens, Christine Power, Jane West, Mette Nyegaard, John A Capra, Anne Heidi Skogholt, Per Magnus, Ole A. Andreassen, Unnur Thorsteinsdottir, Struan F.A. Grant, Elisabeth Qvigstad, Craig E. Pennell, Marie‐France Hivert, M. Geoffrey Hayes, Marjo‐Riitta Järvelin, Mark I. McCarthy, Debbie A. Lawlor, Henriette Svarre Nielsen, Reedik Mägi, Antonis Rokas, Kristian Hveem, Kāri Stefánsson, Bjarke Feenstra, Pål R. Njølstad, Louis J Muglia, Rachel M. Freathy, Stefan Johansson, Ge Zhang, Bo Jacobsson - Nature Genetics 2023 cited by 95

  23. Genome-scale approaches to resolving incongruence in molecular phylogenies

    Authors: Antonis Rokas, Barry L. Williams, Nicole King, Sean B. Carroll - Nature 2003 cited by 1,566

  24. Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes

    Authors: Daniel E. Neafsey, Robert M. Waterhouse, Mohammad Reza Abai, Sergey Aganezov, Max A. Alekseyev, James E. Allen, James Amon, Bruno Arcà, Peter Arensburger, Gleb N. Artemov, Lauren A. Assour, Hamidreza Basseri, Aaron Berlin, Bruce W. Birren, Stéphanie Blandin, Andrew I. Brockman, Thomas R. Burkot, Austin Burt, Clara S. Chan, Cédric Chauve, Joanna C. Chiu, Mikkel Christensen, Carlo Costantini, Victoria L M Davidson, Elena Deligianni, Tania Dottorini, Vicky Dritsou, Stacey B. Gabriel, Wamdaogo M. Guelbéogo, A. Brantley Hall, Mira Han, Thaung Hlaing, Daniel Hughes, Adam M. Jenkins, Xiaofang Jiang, Irwin Jungreis, Evdoxia G. Kakani, Maryam Kamali, Petri Kemppainen, Ryan Kennedy, Ioannis Kirmitzoglou, Lizette L. Koekemoer, Njoroge Laban, Nicholas Langridge, Mara Lawniczak, Manolis Lirakis, Neil F. Lobo, Ernesto Lowy, Robert M. MacCallum, Chunhong Mao, G. Maslen, Charles Mbogo, Jennifer B. McCarthy, Kristin Michel, Sara N. Mitchell, Wendy Moore, Katherine A. Murphy, Anastasia N. Naumenko, Tony Nolan, Eva Maria Novoa, Samantha M. O’Loughlin, Chioma Oringanje, Mohammad Ali Oshaghi, Nazzy Pakpour, Philippos Aris Papathanos, Ashley Peery, Michael Povelones, Anil Prakash, David P. Price, Ashok Rajaraman, Lisa J. Reimer, David C. Rinker, Antonis Rokas, Tanya L. Russell, N’Falé Sagnon, Maria V. Sharakhova, Terrance Shea, Felipe A. Simão, Frédéric Simard, Michel A. Slotman, Pradya Somboon, V. N. Stegniy, Cláudio J. Struchiner, Gregg W.C. Thomas, Marta Tojo, Pantelis Topalis, José M. C. Tubío, Maria Unger, John Vontas, Catherine Walton, Craig S. Wilding, Judith H. Willis, Yi-Chieh Wu, Guiyun Yan, Evgeny M. Zdobnov, Xiaofan Zhou, Flaminia Catteruccia, George K. Christophides, Frank H. Collins, Robert S. Cornman and 20 more - Science 2014 cited by 622