Joseph W. Spatafora
Active 1992–2025
- 94
- Papers
- 26,160
- Citations
- 74
- h-index
- 92
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology42.8%
- Agricultural and Biological Sciences38.3%
- Medicine10.5%
- Environmental Science3.9%
- Engineering1.5%
- Immunology and Microbiology0.9%
- Other2.1%
Topics
- Plant Pathogens and Fungal Diseases13.5%
- Mycorrhizal Fungi and Plant Interactions12.4%
- Fungal Biology and Applications5.6%
- Yeasts and Rust Fungi Studies3.4%
- Plant-Microbe Interactions and Immunity3.2%
- Genomics and Phylogenetic Studies3%
- Other58.9%
Coauthors
- Igor V. Grigoriev27
- Jason Stajich20
- Anna Lipzen17
- Gi‐Ho Sung16
- Conrad L. Schoch15
- Kurt LaButti15
- Kerrie Barry14
- P.W. Crous13
- David S. Hibbett12
- Ying Chang12
- Alan Kuo11
- Timothy Y. James11
- Meredith Blackwell9
- Robin A. Ohm9
- Stephen J. Mondo9
- Bernard Henrissat8
- Erika Lindquist8
- Francis Martin8
- Manfred Binder8
- Alicia Clum7
- Asaf Salamov7
- Gerald L. Benny7
- Gregory Bonito7
- Jasmyn Pangilinan7
All papers
- A genome-scale phylogeny of the kingdom Fungi
Authors: Yuanning Li, Jacob L. Steenwyk, Ying Chang, Yan Wang, Timothy Y. James, Jason Stajich, Joseph W. Spatafora, Marizeth Groenewald, Casey W. Dunn, Chris Todd Hittinger, Xing‐Xing Shen, Antonis Rokas - Current Biology 2021 cited by 374
- The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
Authors: Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Ángel T. Martı́nez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M. Coutinho, Ronald P. de Vries, Patrícia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Paweł Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo, Kurt LaButti, Luis Larrondo, Erika Lindquist, Albee Y. Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. McLaughlin, Ingo Morgenstern, Emanuelle Morin, Claude Murat, László G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz‐Dueñas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz J. St John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy F. Young, Antonio G. Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev, David S. Hibbett - Science 2012 cited by 1,824
- A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
Authors: Joseph W. Spatafora, Ying Chang, Gerald L. Benny, Katy Lazarus, Matthew E. Smith, Mary L. Berbee, Gregory Bonito, Nicolas Corradi, Igor V. Grigoriev, Andrii P. Gryganskyi, Timothy Y. James, Kerry O’Donnell, Robert W. Roberson, Thomas N. Taylor, Jessie Uehling, Rytas Vilgalys, Merlin M. White, Jason Stajich - Mycologia 2016 cited by 1,308
- Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
Authors: Shingo Miyauchi, Enikö Kiss, Alan Kuo, Élodie Drula, Annegret Kohler, Marisol Sánchez‐García, Emmanuelle Morin, Bill Andreopoulos, Kerrie Barry, Gregory Bonito, Marc Buée, Akiko Carver, Cindy Chen, Nicolas Cichocki, Alicia Clum, David Culley, P.W. Crous, Laure Fauchery, Mariangela Girlanda, Richard D. Hayes, Zsófia Kéri, Kurt LaButti, Anna Lipzen, Vincent Lombard, Jon Magnuson, François Maillard, Claude Murat, Matt Nolan, Robin A. Ohm, Jasmyn Pangilinan, Maíra de Freitas Pereira, Silvia Perotto, Martina Peter, Stephanie Pfister, Robert Riley, Yaron Sitrit, J. Benjamin Stielow, Gergely J. Szöllősi, Lucia Žifčáková, Martina Štursová, Joseph W. Spatafora, Leho Tedersoo, Lu‐Min Vaario, Akiyoshi Yamada, Mi Yan, Pengfei Wang, Jianping Xu, Tom Bruns, Petr Baldrián, Rytas Vilgalys, Christophe Dunand, Bernard Henrissat, Igor V. Grigoriev, David S. Hibbett, László G. Nagy, Francis Martin - Nature Communications 2020 cited by 510
- Phylogenetic classification of Cordyceps and the clavicipitaceous fungi
Authors: Gi‐Ho Sung, Nigel L. Hywel‐Jones, Jae-Mo Sung, Janet Jennifer Luangsa-ard, Bhushan Shrestha, Joseph W. Spatafora - Studies in Mycology 2007 cited by 1,053
- A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach
Authors: Gi‐Ho Sung, Jae‐Mo Sung, Nigel L. Hywel‐Jones, Joseph W. Spatafora - Molecular Phylogenetics and Evolution 2007 cited by 643
- Botryosphaeria dothidea : a latent pathogen of global importance to woody plant health
Authors: Angelica Marsberg, Martin Kemler, Fahimeh Jami, Jan H. Nagel, Alisa Postma‐Smidt, Sanushka Naidoo, Michael J. Wingfield, P.W. Crous, Joseph W. Spatafora, Cedar Hesse, Barbara Robbertse, Bernard Slippers - Molecular Plant Pathology 2016 cited by 318
- A higher-level phylogenetic classification of the Fungi
Authors: David S. Hibbett, Manfred Binder, Joseph F. Bischoff, Meredith Blackwell, P. F. Cannon, Ove Eriksson, Sabine M. Huhndorf, Timothy Y. James, Paul M. Kirk, Robert Lücking, H. Thorsten Lumbsch, François Lutzoni, P. Brandon Matheny, David J. McLaughlin, Martha J. Powell, Scott A. Redhead, Conrad L. Schoch, Joseph W. Spatafora, Joost A. Stalpers, Rytas Vilgalys, M. Catherine Aime, André Aptroot, Robert Bauer, Dominik Begerow, Gerald L. Benny, Lisa A. Castlebury, P.W. Crous, Yu‐Cheng Dai, W. Gams, David M. Geiser, Gareth Griffith, Cécile Gueidan, David L. Hawksworth, Geir Hestmark, Kentaro Hosaka, Richard A. Humber, Kevin D. Hyde, Joseph E. Ironside, Urmas Kõljalg, Cletus P. Kurtzman, Karl‐Henrik Larsson, Robert W. Lichtwardt, Joyce E. Longcore, Jolanta Miądlikowska, Andrew N. Miller, Jean‐Marc Moncalvo, Sharon E. Mozley-Standridge, Franz Oberwinkler, Erast Parmasto, Valérie Reeb, Jack D. Rogers, Claude Roux, Leif Ryvarden, José Paulo Sampaio, Arthur Schüßler, Junta Sugiyama, R. Greg Thorn, Leif Tibell, Wendy A. Untereiner, Christopher Walker, Zheng Wang, Alex Weir, Michael Weiß, Merlin M. White, Katarina Winka, Yi‐Jian Yao, Ning Zhang - Mycological Research 2007 cited by 2,384
- Reconstructing the early evolution of Fungi using a six-gene phylogeny
Authors: Timothy Y. James, Frank Kauff, Conrad L. Schoch, P. Brandon Matheny, Valérie Hofstetter, Cymon J. Cox, Gail J. Celio, Cécile Gueidan, Emily Fraker, Jolanta Miądlikowska, H. Thorsten Lumbsch, Alexandra Rauhut, Valérie Reeb, A. Elizabeth Arnold, Anja Amtoft Wynns, Jason Stajich, Kentaro Hosaka, Gi‐Ho Sung, Desiree Johnson, Ben O’Rourke, Michael Crockett, Manfred Binder, Judd M. Curtis, Jason C. Slot, Zheng Wang, Andrew W. Wilson, Arthur Schüßler, Joyce E. Longcore, Kerry O’Donnell, Sharon E. Mozley-Standridge, David Porter, Peter M. Letcher, Martha J. Powell, John W. Taylor, Merlin M. White, Gareth Griffith, D. R. Davies, Richard A. Humber, Joseph B. Morton, Junta Sugiyama, Amy Y. Rossman, Jack D. Rogers, D.H. Pfister, David Hewitt, Karen Hansen, Sarah Hambleton, R. A. Shoemaker, Jan Kohlmeyer, Brigitte Volkmann‐Kohlmeyer, Robert A. Spotts, Maryna Serdani, P.W. Crous, Karen W. Hughes, Kenji Matsuura, Ewald Langer, Gitta Jutta Langer, Wendy A. Untereiner, Robert Lücking, Burkhard Büdel, David M. Geiser, André Aptroot, Paul Diederich, Imke Schmitt, Matthias Schultz, Rebecca Yahr, David S. Hibbett, François Lutzoni, David J. McLaughlin, Joseph W. Spatafora, Rytas Vilgalys - Nature 2006 cited by 1,860
- The genome of Eucalyptus grandis
Authors: Alexander A. Myburg, Dário Grattapaglia, Gerald A. Tuskan, Uffe Hellsten, Richard D. Hayes, Jane Grimwood, Jerry Jenkins, Erika Lindquist, Hope Tice, Diane Bauer, David Goodstein, Inna Dubchak, Alexandre Poliakov, Eshchar Mizrachi, Anand R. K. Kullan, Steven G. Hussey, Desré Pinard, Karen van der Merwe, Pooja Singh, Ida van Jaarsveld, Orzenil B. Silva‐Junior, Roberto Coiti Togawa, Marilia R. Pappas, Danielle Assis de Faria, Carolina Sansaloni, César Daniel Petroli, Xiaohan Yang, Priya Ranjan, Timothy J. Tschaplinski, Chuyu Ye, Ting Li, Lieven Sterck, Kevin Vanneste, Florent Murat, Marçal Soler, Hélène San Clemente, Mohamed Najib Saïdi, Hua Wang, Christophe Dunand, Charles A. Hefer, Erich Bornberg‐Bauer, Anna R. Kersting, Kelly Vining, Vindhya Amarasinghe, Martin Ranik, Sushma Naithani, Justin Elser, Alexander E. Boyd, Aaron Liston, Joseph W. Spatafora, Palitha Dharmwardhana, Rajani Raja, Christopher M. Sullivan, Elisson Romanel, Márcio Alves‐Ferreira, Carsten Külheim, William J. Foley, Víctor Carocha, Jorge A. P. Paiva, David Kudrna, Sérgio Hermínio Brommonschenkel, Giancarlo Pasquali, Margaret Byrne, Philippe Rigault, Josquin Tibbits, Antanas Spokevicius, Rebecca C. Jones, Dorothy A. Steane, René E. Vaillancourt, BM Potts, Fourie Joubert, Kerrie Barry, Γεώργιος Παππάς, Steven H. Strauss, Pankaj Jaiswal, Jacqueline Grima‐Pettenati, Jérôme Salse, Yves Van de Peer, Daniel S. Rokhsar, Jeremy Schmutz - Nature 2014 cited by 997
- Widespread adenine N6-methylation of active genes in fungi
Authors: Stephen J. Mondo, Richard Dannebaum, Rita Kuo, Katherine Louie, Adam J. Bewick, Kurt LaButti, Sajeet Haridas, Alan Kuo, Asaf Salamov, Steven Ahrendt, Rebecca Lau, Benjamin P. Bowen, Anna Lipzen, William Sullivan, Bill Andreopoulos, Alicia Clum, Erika Lindquist, Chris Daum, Trent R. Northen, Govindarajan Kunde‐Ramamoorthy, Robert J. Schmitz, Andrii P. Gryganskyi, David Culley, Jon Magnuson, Timothy Y. James, Michelle O’Malley, Jason Stajich, Joseph W. Spatafora, Axel Visel, Igor V. Grigoriev - Nature Genetics 2017 cited by 369
- Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
Authors: Thierry Rouxel, Jonathan Grandaubert, James K. Hane, Claire Hoede, Angela P. Van de Wouw, Arnaud Couloux, Victoria Domínguez Del Angel, Véronique Anthouard, Pascal Bally, Salim Bourras, Anton Cozijnsen, Lynda M. Ciuffetti, Alexandre Degrave, Azita Dilmaghani, Laurent Duret, Isabelle Fudal, Stephen B. Goodwin, Lilian Gout, Nicolas Glaser, Juliette Linglin, G.H.J. Kema, Nicolas Lapalu, Christopher B. Lawrence, Kim May, Michel Meyer, Bénédicte Ollivier, Julie Poulain, Conrad L. Schoch, Adeline Simon, Joseph W. Spatafora, Anna Stachowiak, B. Gillian Turgeon, Brett M. Tyler, Delphine Vincent, J. Weissenbach, Joëlle Amselem, Hadi Quesneville, Richard P. Oliver, Patrick Wincker, Marie‐Hélène Balesdent, Barbara J. Howlett - Nature Communications 2011 cited by 561
- A phylogenetically-based nomenclature for Cordycipitaceae (Hypocreales)
Authors: Ryan M. Kepler, Janet Jennifer Luangsa-ard, Nigel L. Hywel‐Jones, C. Alisha Quandt, Gi‐Ho Sung, Stephen A. Rehner, M. Catherine Aime, Terry W. Henkel, Tatiana Sanjuán, Rasoul Zare, Mingjun Chen, Zhengzhi Li, Amy Y. Rossman, Joseph W. Spatafora, Bhushan Shrestha - IMA Fungus 2017 cited by 336
- 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens
Authors: Sajeet Haridas, R. Albert, M. Binder, J. Bloem, Kurt LaButti, Asaf Salamov, B. Andreopoulos, Scott Baker, Kerrie Barry, Gerald F. Bills, Burton H. Bluhm, C. Cannon, Raúl Castanera, Deborah Culley, Chris Daum, D. Ezra, Jennifer B González, Bernard Henrissat, Alan Kuo, Chen Liang, Anna Lipzen, François Lutzoni, Jon Magnuson, Stephen J. Mondo, Matt Nolan, Robin A. Ohm, Jasmyn Pangilinan, H.-J. Park, Lucı́a Ramı́rez, Manuel Alfaro, Hui Sun, Andrew Tritt, Yuko Yoshinaga, L.H. Zwiers, B. Gillian Turgeon, Stephen B. Goodwin, Joseph W. Spatafora, P.W. Crous, Igor V. Grigoriev - Studies in Mycology 2020 cited by 233
- Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
Authors: Robin A. Ohm, Nicolas Feau, Bernard Henrissat, Conrad L. Schoch, Benjamin A. Horwitz, Kerrie Barry, Bradford Condon, Alex Copeland, Braham Dhillon, Fabian Glaser, Cedar Hesse, Idit Kosti, Kurt LaButti, Erika Lindquist, Susan Lucas, Asaf Salamov, Rosie E. Bradshaw, Lynda M. Ciuffetti, Richard C. Hamelin, G.H.J. Kema, Christopher B. Lawrence, James A. Scott, Joseph W. Spatafora, B. Gillian Turgeon, P.J.G.M. de Wit, Shaobin Zhong, Stephen B. Goodwin, Igor V. Grigoriev - PLoS Pathogens 2012 cited by 642
- The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits
Authors: Conrad L. Schoch, Gi‐Ho Sung, Francesc López‐Giráldez, Jeffrey P. Townsend, Jolanta Miądlikowska, Valérie Hofstetter, Barbara Robbertse, P. Brandon Matheny, Frank Kauff, Zheng Wang, Cécile Gueidan, Rachael M. Andrie, Kristin M. Trippe, Linda M. Ciufetti, Anja Amtoft Wynns, Emily Fraker, Brendan P. Hodkinson, Gregory Bonito, J.Z. Groenewald, Mahdi Arzanlou, Sybren de Hoog, P.W. Crous, David Hewitt, Donald H. Pfister, Kristin R. Peterson, Marieka Gryzenhout, Michael J. Wingfield, André Aptroot, Sung‐Oui Suh, Meredith Blackwell, David M. Hillis, Gareth Griffith, Lisa A. Castlebury, Amy Y. Rossman, H. Thorsten Lumbsch, Robert Lücking, Burkhard Büdel, Alexandra Rauhut, Paul Diederich, Damien Ertz, David M. Geiser, Kentaro Hosaka, Patrik Inderbitzin, Jan Kohlmeyer, Brigitte Volkmann‐Kohlmeyer, L. Mostert, Kerry O’Donnell, Harrie J. M. Sipman, Jack D. Rogers, R. A. Shoemaker, Junta Sugiyama, Richard C. Summerbell, Wendy A. Untereiner, Peter R. Johnston, Soili Stenroos, Alga Zuccaro, Paul S. Dyer, P. D. Crittenden, Mariette S. Cole, Karen Hansen, James M. Trappe, Rebecca Yahr, François Lutzoni, Joseph W. Spatafora - Systematic Biology 2009 cited by 664
- Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
Authors: Dániel G. Knapp, Julianna B. Németh, Kerrie Barry, Matthieu Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Lim, Anna Lipzen, Matt Nolan, Robin A. Ohm, László Tamás, Igor V. Grigoriev, Joseph W. Spatafora, László G. Nagy, Gábor M. Kovács - Scientific Reports 2018 cited by 197
- Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits
Authors: Zsolt Merényi, Krisztina Krizsán, Neha Sahu, Xiaobin Liu, Balázs Bálint, Jason Stajich, Joseph W. Spatafora, László G. Nagy - Nature Ecology & Evolution 2023 cited by 60
- A class-wide phylogenetic assessment of Dothideomycetes
Authors: Conrad L. Schoch, P.W. Crous, J.Z. Groenewald, E. W. A. Boehm, Treena I. Burgess, J. de Gruyter, Sybren de Hoog, L. J. Dixon, Martín Grube, Cécile Gueidan, Y Harada, Satoshi Hatakeyama, Kazuyuki Hirayama, Tsuyoshi Hosoya, Sabine M. Huhndorf, Kevin D. Hyde, E. B. Gareth Jones, Jan Kohlmeyer, Åsa Kruys, Y. M. Li, Robert Lücking, H. Thorsten Lumbsch, Ludmila Marvanová, Joelle Mbatchou, AnalysisDavid McVay, Andrew N. Miller, George K. Mugambi, Lucía Muggia, Matthew P. Nelsen, Peggy B. Nelson, C. Alisha Owensby, Alan J. L. Phillips, Souwalak Phongpaichit, Stephen B. Pointing, Valérie Pujade‐Renaud, Huzefa A. Raja, Eimy Rivas Plata, Barbara Robbertse, Constantino Ruibal, Jariya Sakayaroj, Teruo Sano, Laura Selbmann, Carol A. Shearer, Takashi Shirouzu, Bernard Slippers, Satinee Suetrong, Kazuaki Tanaka, Brigitte Volkmann‐Kohlmeyer, Michael J. Wingfield, Alan R. Wood, J.H.C. Woudenberg, Hiroaki Yonezawa, Y. Zhang, Joseph W. Spatafora - Studies in Mycology 2009 cited by 607
- The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies
Authors: Joseph W. Spatafora, M. Catherine Aime, Igor V. Grigoriev, Francis Martin, Jason Stajich, Meredith Blackwell - Microbiology Spectrum 2017 cited by 269
- Phylogenetic-based nomenclatural proposals for Ophiocordycipitaceae (Hypocreales) with new combinations in Tolypocladium
Authors: C. Alisha Quandt, Ryan M. Kepler, W. Gams, João P. M. Araújo, Sayaka Ban, Harry C. Evans, David Hughes, Richard A. Humber, Nigel L. Hywel‐Jones, Zengzhi Li, Janet Jennifer Luangsa-ard, Stephen A. Rehner, Tatiana Sanjuán, Hiroki Sato, Bhushan Shrestha, Gi‐Ho Sung, Yi-Jian Yao, Rasoul Zare, Joseph W. Spatafora - IMA Fungus 2014 cited by 215
- The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster
Authors: Kathryn E. Bushley, Rajani Raja, Pankaj Jaiswal, Jason S. Cumbie, Mariko Nonogaki, Alexander E. Boyd, C. Alisha Owensby, Brian J. Knaus, Justin Elser, Daniel Miller, Yanming Di, Kerry L. McPhail, Joseph W. Spatafora - PLoS Genetics 2013 cited by 176
- Multigene phylogeny reveals new lineage for Stachybotrys chartarum, the indoor air fungus
Authors: Lisa A. Castlebury, Amy Y. Rossman, Gi‐Ho Sung, Aimee S. Hyten, Joseph W. Spatafora - Mycological Research 2004 cited by 292
- Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
Authors: François Lutzoni, Frank Kauff, Cymon J. Cox, David J. McLaughlin, Gail J. Celio, Bryn T. M. Dentinger, Mahajabeen Padamsee, David S. Hibbett, Timothy Y. James, Elisabeth Baloch, Martín Grube, Valérie Reeb, Valérie Hofstetter, Conrad L. Schoch, A. Elizabeth Arnold, Jolanta Miądlikowska, Joseph W. Spatafora, Desiree Johnson, Sarah Hambleton, Michael Crockett, R. A. Shoemaker, Gi‐Ho Sung, Robert Lücking, Thorsten Lumbsch, Kerry O’Donnell, Manfred Binder, Paul Diederich, Damien Ertz, Cécile Gueidan, Karen Hansen, Richard C. Harris, Kentaro Hosaka, Young‐Woon Lim, Brandon Matheny, Hiromi Nishida, D.H. Pfister, Jack D. Rogers, Amy Y. Rossman, Imke Schmitt, Harrie J. M. Sipman, Jeffrey K. Stone, Junta Sugiyama, Rebecca Yahr, Rytas Vilgalys - American Journal of Botany 2004 cited by 821
