Timothy Y. James
Active 1999–2025
- 98
- Papers
- 26,457
- Citations
- 61
- h-index
- 89
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology39.4%
- Agricultural and Biological Sciences28.8%
- Environmental Science12.5%
- Medicine11.8%
- Immunology and Microbiology3.1%
- Earth and Planetary Sciences0.9%
- Other3.5%
Topics
- Plant Pathogens and Fungal Diseases11.5%
- Mycorrhizal Fungi and Plant Interactions11%
- Protist diversity and phylogeny4.8%
- Fungal Biology and Applications4.2%
- Microbial Community Ecology and Physiology4%
- Genomics and Phylogenetic Studies3.5%
- Other61%
Coauthors
- Jason Stajich18
- Joyce E. Longcore16
- Luı́s Felipe Toledo13
- D. Rabern Simmons12
- Rytas Vilgalys12
- Joseph W. Spatafora10
- Igor V. Grigoriev9
- Thomas S. Jenkinson9
- Anat M. Belasen8
- Ying Chang7
- C. Alisha Quandt6
- Domingos da Silva Leite6
- Gerald L. Benny6
- Kelly R. Zamudio6
- Kevin R. Amses6
- Rebecca A. Clemons6
- Ursula Kües6
- Alden C. Dirks5
- C. Guilherme Becker5
- Carolina Lambertini5
- Conrad L. Schoch5
- Gregory Bonito5
- Matthew E. Smith5
- Steven Ahrendt5
All papers
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Authors: Conrad L. Schoch, Keith A. Seifert, Sabine M. Huhndorf, Vincent Robert, John L. Spouge, C. André Lévesque, Wen Chen, Elena Bolchacova, Kerstin Voigt, P.W. Crous, Andrew N. Miller, Michael J. Wingfield, M. Catherine Aime, Kwang-Deuk An, Feng‐Yan Bai, Robert W. Barreto, Dominik Begerow, Marie‐Josée Bergeron, Meredith Blackwell, Teun Boekhout, Mesfin Bogale, Nattawut Boonyuen, Ana Rosa Burgaz, Bart Buyck, Lei Cai, Qing Cai, Gianluigi Cardinali, Priscila Chaverrí, B. J. Coppins, Ana Crespo, Pilar Cubas, Craig Cummings, Ulrike Damm, Z. Wilhelm de Beer, Sybren de Hoog, Ruth Del‐Prado, Bryn T. M. Dentinger, Javier Diéguez‐Uribeondo, Pradeep K. Divakar, Brian Douglas, Margarita Dueñas, Tuan A. Duong, Ursula Eberhardt, Joan E. Edwards, Mostafa S. Elshahed, K. Fliegerová, Manohar R. Furtado, Miguel A. Garcı́a, Zai-Wei Ge, Gareth Griffith, Kate Griffiths, J.Z. Groenewald, Marizeth Groenewald, Martín Grube, Marieka Gryzenhout, Liang‐Dong Guo, Ferry Hagen, Sarah Hambleton, Richard C. Hamelin, Karen Hansen, Paul Harrold, Gregory Heller, Cesar S. Herrera, Kazuyuki Hirayama, Yuuri Hirooka, Hsiao-Man Ho, Kerstin Hoffmann, Valérie Hofstetter, Filip Högnabba, Peter M. Hollingsworth, Seung‐Beom Hong, Kentaro Hosaka, Jos Houbraken, Karen W. Hughes, Seppo Huhtinen, Kevin D. Hyde, Timothy Y. James, Eric M. Johnson, Joan E. Johnson, Peter R. Johnston, E. B. Gareth Jones, Laura J. Kelly, Paul M. Kirk, Dániel G. Knapp, Urmas Kõljalg, Gábor M. Kovács, Cletus P. Kurtzman, Sara Landvik, Steven D. Leavitt, Audra S. Liggenstoffer, Kare Liimatainen, Lorenzo Lombard, Janet Jennifer Luangsa-ard, H. Thorsten Lumbsch, Harinad B. Maganti, Sajeewa S. N. Maharachchikumbura, María P. Martín, Tom W. May, Alistair R. McTaggart, Andrew S. Methven and 56 more - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 cited by 5,098
- Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
Authors: Sina M. Adl, David Bass, Christopher E. Lane, Julius Lukeš, Conrad L. Schoch, А. В. Смирнов, Sabine Agatha, Cédric Berney, Matthew W. Brown, Fabien Burki, Paco Cárdenas, Ivan Čepička, Ludmila Chistyakova, Javier del Campo, Micah Dunthorn, Bente Edvardsen, Yana Eglit, Laure Guillou, Vladimı́r Hampl, Aaron A. Heiss, Mona Hoppenrath, Timothy Y. James, Anna Karnkowska, Sergey A. Karpov, Eunsoo Kim, Martin Kolísko, Alexander Kudryavtsev, Daniel J. G. Lahr, Enrique Lara, Line Le Gall, Denis H. Lynn, David G. Mann, Ramón Massana, Edward A. D. Mitchell, Christine Morrow, Jong Soo Park, Jan Pawłowski, Martha J. Powell, Daniel J. Richter, Sonja Rueckert, Lora L. Shadwick, Satoshi Shimano, Frederick W. Spiegel, Guifré Torruella, Noha H. Youssef, Vasily V. Zlatogursky, Qianqian Zhang - Journal of Eukaryotic Microbiology 2018 cited by 1,399
- A genome-scale phylogeny of the kingdom Fungi
Authors: Yuanning Li, Jacob L. Steenwyk, Ying Chang, Yan Wang, Timothy Y. James, Jason Stajich, Joseph W. Spatafora, Marizeth Groenewald, Casey W. Dunn, Chris Todd Hittinger, Xing‐Xing Shen, Antonis Rokas - Current Biology 2021 cited by 374
- A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
Authors: Joseph W. Spatafora, Ying Chang, Gerald L. Benny, Katy Lazarus, Matthew E. Smith, Mary L. Berbee, Gregory Bonito, Nicolas Corradi, Igor V. Grigoriev, Andrii P. Gryganskyi, Timothy Y. James, Kerry O’Donnell, Robert W. Roberson, Thomas N. Taylor, Jessie Uehling, Rytas Vilgalys, Merlin M. White, Jason Stajich - Mycologia 2016 cited by 1,308
- A higher-level phylogenetic classification of the Fungi
Authors: David S. Hibbett, Manfred Binder, Joseph F. Bischoff, Meredith Blackwell, P. F. Cannon, Ove Eriksson, Sabine M. Huhndorf, Timothy Y. James, Paul M. Kirk, Robert Lücking, H. Thorsten Lumbsch, François Lutzoni, P. Brandon Matheny, David J. McLaughlin, Martha J. Powell, Scott A. Redhead, Conrad L. Schoch, Joseph W. Spatafora, Joost A. Stalpers, Rytas Vilgalys, M. Catherine Aime, André Aptroot, Robert Bauer, Dominik Begerow, Gerald L. Benny, Lisa A. Castlebury, P.W. Crous, Yu‐Cheng Dai, W. Gams, David M. Geiser, Gareth Griffith, Cécile Gueidan, David L. Hawksworth, Geir Hestmark, Kentaro Hosaka, Richard A. Humber, Kevin D. Hyde, Joseph E. Ironside, Urmas Kõljalg, Cletus P. Kurtzman, Karl‐Henrik Larsson, Robert W. Lichtwardt, Joyce E. Longcore, Jolanta Miądlikowska, Andrew N. Miller, Jean‐Marc Moncalvo, Sharon E. Mozley-Standridge, Franz Oberwinkler, Erast Parmasto, Valérie Reeb, Jack D. Rogers, Claude Roux, Leif Ryvarden, José Paulo Sampaio, Arthur Schüßler, Junta Sugiyama, R. Greg Thorn, Leif Tibell, Wendy A. Untereiner, Christopher Walker, Zheng Wang, Alex Weir, Michael Weiß, Merlin M. White, Katarina Winka, Yi‐Jian Yao, Ning Zhang - Mycological Research 2007 cited by 2,384
- Reconstructing the early evolution of Fungi using a six-gene phylogeny
Authors: Timothy Y. James, Frank Kauff, Conrad L. Schoch, P. Brandon Matheny, Valérie Hofstetter, Cymon J. Cox, Gail J. Celio, Cécile Gueidan, Emily Fraker, Jolanta Miądlikowska, H. Thorsten Lumbsch, Alexandra Rauhut, Valérie Reeb, A. Elizabeth Arnold, Anja Amtoft Wynns, Jason Stajich, Kentaro Hosaka, Gi‐Ho Sung, Desiree Johnson, Ben O’Rourke, Michael Crockett, Manfred Binder, Judd M. Curtis, Jason C. Slot, Zheng Wang, Andrew W. Wilson, Arthur Schüßler, Joyce E. Longcore, Kerry O’Donnell, Sharon E. Mozley-Standridge, David Porter, Peter M. Letcher, Martha J. Powell, John W. Taylor, Merlin M. White, Gareth Griffith, D. R. Davies, Richard A. Humber, Joseph B. Morton, Junta Sugiyama, Amy Y. Rossman, Jack D. Rogers, D.H. Pfister, David Hewitt, Karen Hansen, Sarah Hambleton, R. A. Shoemaker, Jan Kohlmeyer, Brigitte Volkmann‐Kohlmeyer, Robert A. Spotts, Maryna Serdani, P.W. Crous, Karen W. Hughes, Kenji Matsuura, Ewald Langer, Gitta Jutta Langer, Wendy A. Untereiner, Robert Lücking, Burkhard Büdel, David M. Geiser, André Aptroot, Paul Diederich, Imke Schmitt, Matthias Schultz, Rebecca Yahr, David S. Hibbett, François Lutzoni, David J. McLaughlin, Joseph W. Spatafora, Rytas Vilgalys - Nature 2006 cited by 1,860
- Toward a Fully Resolved Fungal Tree of Life
Authors: Timothy Y. James, Jason Stajich, Chris Todd Hittinger, Antonis Rokas - Annual Review of Microbiology 2020 cited by 258
- One hundred and seventeen clades of euagarics
Authors: Jean‐Marc Moncalvo, Rytas Vilgalys, Scott A. Redhead, J.E. Johnson, Timothy Y. James, M. Catherine Aime, Valérie Hofstetter, Sebastiaan J. W. Verduin, Ellen Larsson, Timothy J. Baroni, R. Greg Thorn, Stig Jacobsson, H. Clémençon, Orson K. Miller - Molecular Phylogenetics and Evolution 2002 cited by 719
- Widespread adenine N6-methylation of active genes in fungi
Authors: Stephen J. Mondo, Richard Dannebaum, Rita Kuo, Katherine Louie, Adam J. Bewick, Kurt LaButti, Sajeet Haridas, Alan Kuo, Asaf Salamov, Steven Ahrendt, Rebecca Lau, Benjamin P. Bowen, Anna Lipzen, William Sullivan, Bill Andreopoulos, Alicia Clum, Erika Lindquist, Chris Daum, Trent R. Northen, Govindarajan Kunde‐Ramamoorthy, Robert J. Schmitz, Andrii P. Gryganskyi, David Culley, Jon Magnuson, Timothy Y. James, Michelle O’Malley, Jason Stajich, Joseph W. Spatafora, Axel Visel, Igor V. Grigoriev - Nature Genetics 2017 cited by 369
- Recent Asian origin of chytrid fungi causing global amphibian declines
Authors: Simon J. O’Hanlon, Adrien Rieux, Rhys A. Farrer, Gonçalo M. Rosa, Bruce Waldman, Arnaud Bataille, Tiffany A. Kosch, Kris A. Murray, Balázs Brankovics, Matteo Fumagalli, Michael D. Martin, Nathan Wales, Mario Alvarado‐Rybak, Kieran A. Bates, Lee Berger, Susanne Böll, Lola Brookes, Frances C. Clare, Élodie A. Courtois, Andrew A. Cunningham, Thomas M. Doherty‐Bone, Pria N. Ghosh, David J. Gower, William E. Hintz, Jacob Höglund, Thomas S. Jenkinson, Chun-Fu Lin, Anssi Laurila, Adeline Loyau, An Martel, Sara Meurling, Claude Miaud, Pete Minting, Frank Pasmans, Dirk S. Schmeller, Benedikt R. Schmidt, Jennifer Shelton, Lee F. Skerratt, Freya Smith, Claudio Azat, Matteo Spagnoletti, Giulia Tessa, Luı́s Felipe Toledo, Andrés Valenzuela‐Sánchez, Ruhan Verster, Judit Vörös, Rebecca J. Webb, Claudia Wierzbicki, Emma Wombwell, Kelly R. Zamudio, David M. Aanensen, Timothy Y. James, M. Thomas P. Gilbert, Ché Weldon, Jaime Bosch, François Balloux, Trenton W. J. Garner, Matthew C. Fisher - Science 2018 cited by 599
- Contemporaneous radiations of fungi and plants linked to symbiosis
Authors: François Lutzoni, Michael Nowak, Michael E. Alfaro, Valérie Reeb, Jolanta Miądlikowska, Michael Krug, A. Elizabeth Arnold, Louise A. Lewis, David L. Swofford, David S. Hibbett, Khidir W. Hilu, Timothy Y. James, Dietmar Quandt, Susana Magallón - Nature Communications 2018 cited by 310
- The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists
Authors: Sina M. Adl, Alastair G. B. Simpson, Mark A. Farmer, Robert A. Andersen, O. Roger Anderson, John R. Barta, Samuel S. Bowser, Guy Brugerolle, Robert A. Fensome, Suzanne Fredericq, Timothy Y. James, Sergey A. Karpov, Paul Kugrens, John C. Krug, Christopher E. Lane, Louise A. Lewis, Jean M. Lodge, Denis H. Lynn, David G. Mann, Richard M. McCourt, Leonel Mendoza, Øjvind Moestrup, Sharon E. Mozley-Standridge, Thomas A. Nerad, Carol A. Shearer, А. В. Смирнов, Frederick W. Spiegel, “Max” F. J. R. Taylor - Journal of Eukaryotic Microbiology 2005 cited by 1,724
- Mycoviruses
Authors: Jillian M. Myers, Timothy Y. James - Current Biology 2022 cited by 89
- Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi
Authors: Hans‐Peter Grossart, Christian Wurzbacher, Timothy Y. James, Maiko Kagami - Fungal ecology 2015 cited by 225
- Marine fungi
Authors: Amy S. Gladfelter, Timothy Y. James, Anthony S. Amend - Current Biology 2019 cited by 133
- Early-diverging fungal phyla: taxonomy, species concept, ecology, distribution, anthropogenic impact, and novel phylogenetic proposals
Authors: Kerstin Voigt, Timothy Y. James, Paul M. Kirk, André Luiz Cabral Monteiro de Azevedo Santiago, Bruce Waldman, Gareth Griffith, Minjie Fu, Renate Radek, Jürgen F. H. Strassert, Christian Wurzbacher, Gustavo Henrique Jerônimo, D. Rabern Simmons, Kensuke Seto, Eleni Gentekaki, Vedprakash G. Hurdeal, Kevin D. Hyde, Thuong T. T. Nguyen, Hyang Burm Lee - Fungal Diversity 2021 cited by 91
- Candida albicans selection for human commensalism results in substantial within-host diversity without decreasing fitness for invasive disease
Authors: Faith M. Anderson, Noelle D. Visser, Kevin R. Amses, Andrea Hodgins-Davis, Alexandra M. Weber, Katura Metzner, Michael J. McFadden, Ryan E. Mills, Matthew J. O’Meara, Timothy Y. James, Teresa R. O’Meara - PLoS Biology 2023 cited by 59
- Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses
Authors: Jillian M. Myers, Anne E. Bonds, Rebecca A. Clemons, Natasha Thapa, D. Rabern Simmons, Derreck Carter-House, Jericho Ortañez, P. Liu, Alejandro Miralles-Durán, Alessandro Desirò, Joyce E. Longcore, Gregory Bonito, Jason Stajich, J. W. Spatafora, Ying Chang, Luis M. Corrochano, Andrii P. Gryganskyi, Igor V. Grigoriev, Timothy Y. James - mBio 2020 cited by 86
- Early Diverging Fungi: Diversity and Impact at the Dawn of Terrestrial Life
Authors: Mary L. Berbee, Timothy Y. James, Christine Strullu‐Derrien - Annual Review of Microbiology 2017 cited by 219
- Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
Authors: François Lutzoni, Frank Kauff, Cymon J. Cox, David J. McLaughlin, Gail J. Celio, Bryn T. M. Dentinger, Mahajabeen Padamsee, David S. Hibbett, Timothy Y. James, Elisabeth Baloch, Martín Grube, Valérie Reeb, Valérie Hofstetter, Conrad L. Schoch, A. Elizabeth Arnold, Jolanta Miądlikowska, Joseph W. Spatafora, Desiree Johnson, Sarah Hambleton, Michael Crockett, R. A. Shoemaker, Gi‐Ho Sung, Robert Lücking, Thorsten Lumbsch, Kerry O’Donnell, Manfred Binder, Paul Diederich, Damien Ertz, Cécile Gueidan, Karen Hansen, Richard C. Harris, Kentaro Hosaka, Young‐Woon Lim, Brandon Matheny, Hiromi Nishida, D.H. Pfister, Jack D. Rogers, Amy Y. Rossman, Imke Schmitt, Harrie J. M. Sipman, Jeffrey K. Stone, Junta Sugiyama, Rebecca Yahr, Rytas Vilgalys - American Journal of Botany 2004 cited by 821
- Diploid-dominant life cycles characterize the early evolution of Fungi
Authors: Kevin R. Amses, D. Rabern Simmons, Joyce E. Longcore, Stephen J. Mondo, Kensuke Seto, Gustavo Henrique Jerônimo, Anne E. Bonds, C. Alisha Quandt, William J. Davis, Ying Chang, Brian A. Federici, Alan Kuo, Kurt LaButti, Jasmyn Pangilinan, William Andreopoulos, Andrew Tritt, Robert Riley, Hope Hundley, Jenifer Johnson, Anna Lipzen, Kerrie Barry, B. Franz Lang, Christina A. Cuomo, Nicolas E. Buchler, Igor V. Grigoriev, Joseph W. Spatafora, Jason Stajich, Timothy Y. James - National Academy of Sciences, Proceedings of the National Academy of Sciences 2022 cited by 80
- Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea ( Coprinus cinereus )
Authors: Jason Stajich, Sarah K. Wilke, Dag Ahrén, Chun Hang Au, Bruce W. Birren, Mark Borodovsky, Claire Burns, Björn Canbäck, Lorna A. Casselton, Eric C. K. Cheng, Jixin Deng, Fred S. Dietrich, David C. Fargo, Mark Farman, Allen C. Gathman, Jonathan M. Goldberg, Roderic Guigó, Patrick J. Hoegger, James B. Hooker, Ashleigh Huggins, Timothy Y. James, Takashi Kamada, Sreedhar Kilaru, Chinnapa Kodira, Ursula Kües, Doris M. Kupfer, Hoi Shan Kwan, Alexandre Lomsadze, Weixi Li, Walt W. Lilly, Li‐Jun Ma, Aaron J. Mackey, Gerard Manning, Francis Martin, Hajime Muraguchi, Donald O. Natvig, Heather J Palmerini, Marilee A. Ramesh, Cathy J. Rehmeyer, Bruce A. Roe, Narmada Shenoy, Mario Stanke, Vardges Ter-Hovhannisyan, Anders Tunlid, Rajesh Velagapudi, Todd Vision, Qiandong Zeng, Miriam E. Zolan, Patricia J. Pukkila - National Academy of Sciences, Proceedings of the National Academy of Sciences 2010 cited by 425
- Novel soil-inhabiting clades fill gaps in the fungal tree of life
Authors: Leho Tedersoo, Mohammad Bahram, Rasmus Puusepp, R. Henrik Nilsson, Timothy Y. James - Microbiome 2017 cited by 187
- Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia
Authors: Timothy Y. James, Adrian Pelin, Linda Bonen, Steven Ahrendt, Divya Sain, Nicolas Corradi, Jason Stajich - Current Biology 2013 cited by 364
