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Alla Lapidus

Active 1997–2025

86
Papers
31,071
Citations
79
h-index
83
i10-index

Citations

Citations per year for Alla Lapidus1982: 1 citations1986: 1 citations1988: 1 citations1992: 3 citations1995: 1 citations1997: 1 citations1998: 107 citations1999: 131 citations2000: 106 citations2001: 102 citations2002: 101 citations2003: 92 citations2004: 113 citations2005: 108 citations2006: 119 citations2007: 129 citations2008: 191 citations2009: 260 citations2010: 313 citations2011: 354 citations2012: 356 citations2013: 334 citations2014: 411 citations2015: 310 citations2016: 257 citations2017: 262 citations2018: 234 citations2019: 654 citations2020: 672 citations2021: 693 citations2022: 586 citations2023: 485 citations2024: 908 citations2025: 433 citations2026: 17 citations1983–1985: no citations, so these years are not shown1987: no citations, so this year is not shown1989–1991: no citations, so these years are not shown1993–1994: no citations, so these years are not shown1996: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,225 citing papers, 22.7% of this breakdownChina: 1,109 citing papers, 7.8% of this breakdownGermany: 1,076 citing papers, 7.6% of this breakdownUnited Kingdom: 844 citing papers, 5.9% of this breakdownFrance: 774 citing papers, 5.5% of this breakdownNetherlands: 519 citing papers, 3.7% of this breakdownCanada: 500 citing papers, 3.5% of this breakdownJapan: 463 citing papers, 3.3% of this breakdownAustralia: 413 citing papers, 2.9% of this breakdownSpain: 408 citing papers, 2.9% of this breakdownItaly: 315 citing papers, 2.2% of this breakdownIndia: 269 citing papers, 1.9% of this breakdown
0%22.7%Other 30.1%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology48%
  • Environmental Science15.7%
  • Agricultural and Biological Sciences14.2%
  • Medicine10%
  • Engineering3.3%
  • Nursing3%
  • Other5.8%

Topics

  • Genomics and Phylogenetic Studies10.3%
  • Microbial Community Ecology and Physiology6.4%
  • Gut microbiota and health4.5%
  • Bacteriophages and microbial interactions3.9%
  • Bacterial Genetics and Biotechnology3.4%
  • Probiotics and Fermented Foods3%
  • Other68.5%

Coauthors

All papers

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  1. Using SPAdes De Novo Assembler

    Authors: Andrey D. Prjibelski, Dmitry Antipov, Dmitry Meleshko, Alla Lapidus, Anton Korobeynikov - Current Protocols in Bioinformatics 2020 cited by 3,472

  2. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Authors: Robert M. Bowers, Nikos C. Kyrpides, Ramūnas Stepanauskas, Miranda Harmon‐Smith, Devin F. R. Doud, T. B. K. Reddy, Frederik Schulz, Jessica K. Jarett, Adam R. Rivers, Emiley A. Eloe‐Fadrosh, Susannah G. Tringe, Natalia Ivanova, Alex Copeland, Alicia Clum, Eric D. Becraft, Rex R. Malmstrom, Bruce W. Birren, Mircea Podar, Peer Bork, George M. Weinstock, George M Garrity, Jeremy A. Dodsworth, Shibu Yooseph, Granger Sutton, Frank Oliver Glöckner, Jack A. Gilbert, William Nelson, Steven Hallam, Sean P. Jungbluth, Thijs J. G. Ettema, Scott Tighe, Konstantinos T. Konstantinidis, Wen‐Tso Liu, Brett J. Baker, Thomas Rattei, Jonathan A. Eisen, Brian P. Hedlund, Katherine D. McMahon, Noah Fierer, Rob Knight, ROBERT FINN, Guy Cochrane, Ilene Karsch‐Mizrachi, Gene W Tyson, Christian Rinke, Alla Lapidus, Folker Meyer, Pelin Yilmaz, Donovan H. Parks, A. Murat Eren, Lynn M. Schriml, Jillian F. Banfield, Philip Hugenholtz, Tanja Woyke - Nature Biotechnology 2017 cited by 2,712

  3. rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

    Authors: Elena Bushmanova, Dmitry Antipov, Alla Lapidus, Andrey D. Prjibelski - GigaScience 2019 cited by 900

  4. Accurate isoform discovery with IsoQuant using long reads

    Authors: Andrey D. Prjibelski, Alla Mikheenko, Anoushka Joglekar, Alexander Smetanin, Julien Jarroux, Alla Lapidus, Hagen Tilgner - Nature Biotechnology 2023 cited by 257

  5. The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

    Authors: David A. Sela, Jarrod Chapman, A. Adeuya, Jae‐Han Kim, Fuhong Chen, Terence R. Whitehead, Alla Lapidus, Daniel S. Rokhsar, Carlito B. Lebrilla, J. Bruce German, Neil P. J. Price, Paul M. Richardson, David A. Mills - National Academy of Sciences, Proceedings of the National Academy of Sciences 2008 cited by 891

  6. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis

    Authors: Frank Kunst, Naotaka Ogasawara, Ivan Moszer, Alberto Albertini, G. Alloni, Vasco Azevedo, Michela G. Bertero, P. Bessières, A. Bolotin, S. Borchert, Rainer Borriss, Laurent Boursier, Alain Brans, Martha Braun, S. C. Brignell, Sierd Bron, Sophie Brouillet, Carlo V. Bruschi, B. A. Caldwell, Véronique Capuano, Nick Carter, Soo-Keun Choi, Jean-Jacques Codani, Ian F. Connerton, Nicola Cummings, Richard A. Daniel, François Denizot, Kevin M. Devine, Andreas Düsterhöft, S. Dusko Ehrlich, Peter T. Emmerson, K.-D. Entian, Jeff Errington, C. Fabret, E Ferrari, D. Foulger, C. Fritz, Masaya Fujita, Yusuke Fujita, S. Fuma, A. Galizzi, Nathalie Galleron, Sa‐Youl Ghim, Philippe Glaser, A Goffeau, Elizabeth J. Golightly, G. Grandi, G. Guiseppi, B. J. Guy, Koki Haga, Jacques Haiech, Colin R. Harwood, Alain Hénaut, H. Hilbert, Siger Holsappel, Satoyo Hosono, Marie-Françoise Hullo, Mitsuhiro Itaya, Louis Jones, Bernard Joris, Dimitri Karamata, Yasuhiro Kasahara, Maude Klaerr-Blanchard, C Klein, Yasumasa Kobayashi, P. Koetter, Gregory M. Koningstein, Susanne Krogh, Miyuki Kumano, Kenji L. Kurita, Alla Lapidus, Sophie Lardinois, Jürgen Lauber, Vladimir Lazarević, Siow Ming Lee, Anna Levine, Haizhou Liu, S Masuda, Catherine Mauël, Claudine Médigue, Nadine Medina, Rafael P. Mellado, Mamoru Mizuno, D. Moestl, S. Nakai, Michiel Noback, David Noone, Mary O’Reilly, K. Ogawa, Atsushi Ogiwara, Bauke Oudega, S.-H. Park, Vı́ctor Parro, Thomas Pohl, Daniel Portetelle, Steffen Porwollik, A. M. Prescott, Elena Presecan, Petar Pujić, B. Purnelle and 51 more - Nature 1997 cited by 3,713

  7. Comparative genomics of biotechnologically important yeasts

    Authors: Robert Riley, Sajeet Haridas, Kenneth H. Wolfe, Mariana Lopes, Chris Todd Hittinger, Markus Göker, Asaf Salamov, Jennifer H. Wisecaver, Tanya M. Long, Christopher H. Calvey, Andrea Aerts, Kerrie Barry, Cindy Choi, Alicia Clum, Aisling Y. Coughlan, Shweta Deshpande, Alexander Douglass, Sara J. Hanson, Hans‐Peter Klenk, Kurt LaButti, Alla Lapidus, Erika Lindquist, Anna Lipzen, Jan P. Meier‐Kolthoff, Robin A. Ohm, Robert Otillar, Jasmyn Pangilinan, Peng Yi, Antonis Rokas, Carlos A. Rosa, Carmen Scheuner, Andriy А. Sibirny, Jason C. Slot, J. Benjamin Stielow, Hui Sun, Cletus P. Kurtzman, Meredith Blackwell, Igor V. Grigoriev, Thomas W. Jeffries - National Academy of Sciences, Proceedings of the National Academy of Sciences 2016 cited by 397

  8. Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

    Authors: Ronald P. de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar‐Osorio, Sotiris Amillis, Cristiane Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Özgür Bayram, Tiziano Benocci, Susanna A. Braus‐Stromeyer, Camila Caldana, David Cánovas, Gustavo Cerqueira, Fusheng Chen, Wan‐Ping Chen, Cindy Choi, Alicia Clum, Renato Santos, André Damásio, George Diallinas, Tamás Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, María Laura Harispe, Bernard Henrissat, Kristiina Hildén, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karányi, Nada Kraševec, Alan Kuo, Harald Kusch, Kurt LaButti, Ellen L. Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio Logrieco, Andrew MacCabe, Miia Mäkelä, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Márton Miskei, Ákos Molnár, Giuseppina Mulè, Chew Yee Ngan, Margarita Orejas, Erzsébet Orosz, Jean Ouedraogo, Karin Overkamp, Hee-Soo Park, Giancarlo Perrone, François Piumi, Peter J. Punt, Arthur F. J. Ram, Ana Ramón, Stefan Rauscher, Éric Record, Diego Mauricio Riaño‐Pachón, Vincent Robert, Julian Röhrig, Roberto Ruller, Asaf Salamov, Nadhira S. Salih, Robert A. Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schütze, Kristina Sepčić, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fábio M. Squina, Hui Sun, Antonia Susca, Richard B. Todd, Adrian Tsang, Shiela E. Unkles, Nathalie van de Wiele, Diana van Rossen-Uffink, Juliana Oliveira, Tammi Vesth, Jaap Visser, Jae‐Hyuk Yu, Miaomiao Zhou, Mikael Rørdam Andersen and 17 more - Genome biology 2017 cited by 507

  9. Plasmid detection and assembly in genomic and metagenomic data sets

    Authors: Dmitry Antipov, Mikhail Raiko, Alla Lapidus, Pavel A. Pevzner - Genome Research 2019 cited by 197

  10. Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

    Authors: Emmanuelle Morin, Annegret Kohler, Adam Baker, Marie Foulongne‐Oriol, Vincent Lombard, Laszlo G. Nagye, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun, Andrea Aerts, Andy M. Bailey, Christophe Billette, Pedro M. Coutinho, Greg Deakin, HarshaVardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt LaButti, Alla Lapidus, Erika Lindquist, Susan Lucas, Claude Murat, Robert Riley, Asaf Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, A.S.M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 cited by 402

  11. Metagenomic Data Assembly – The Way of Decoding Unknown Microorganisms

    Authors: Alla Lapidus, Anton Korobeynikov - Frontiers in Microbiology 2021 cited by 142

  12. The genomic basis of trophic strategy in marine bacteria

    Authors: Federico M. Lauro, Diane McDougald, Torsten Thomas, Timothy J. Williams, Suhelen Egan, Scott Rice, Matthew Z. DeMaere, Lily Ting, Haluk Ertan, Justin Johnson, Steven Ferriera, Alla Lapidus, Iain Anderson, Nikos C. Kyrpides, A. Christine Munk, Chris Detter, Cliff Han, Mark V. Brown, Frank T. Robb, Staffan Kjelleberg, Ricardo Cavicchioli - National Academy of Sciences, Proceedings of the National Academy of Sciences 2009 cited by 779

  13. Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles

    Authors: Raúl Castanera, Leticia López-Varas, Alessandra Borgognone, Kurt LaButti, Alla Lapidus, Jeremy Schmutz, Jane Grimwood, Gúmer Pérez, Antonio G. Pisabarro, Igor V. Grigoriev, Jason Stajich, Lucı́a Ramı́rez - PLoS Genetics 2016 cited by 225

  14. A Bioinformatician's Guide to Metagenomics

    Authors: Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz - Microbiology and Molecular Biology Reviews 2008 cited by 494

  15. Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica

    Authors: Daniel Udwary, Lisa Zeigler, Ratnakar N. Asolkar, Vasanth Singan, Alla Lapidus, William Fenical, Paul R. Jensen, Bradley S. Moore - National Academy of Sciences, Proceedings of the National Academy of Sciences 2007 cited by 523

  16. Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus

    Authors: Alexander Bolotin, Benoît Quinquis, Pierre Renault, Alexeï Sorokin, S. Dusko Ehrlich, Saulius Kulakauskas, Alla Lapidus, Eugene Goltsman, Michael Mazur, Gordon D. Pusch, Michael Fonstein, Ross Overbeek, Nikos Kyprides, Bénédicte Purnelle, Deborah Prozzi, Katrina Ngui, David Masuy, Frédéric Hancy, Sophie Burteau, Marc Boutry, Jean Delcour, André Goffeau, Pascal Hols - Nature Biotechnology 2004 cited by 494

  17. The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri

    Authors: Steven A. Frese, Andrew K. Benson, Gerald W. Tannock, Diane M. Loach, Jaehyoung Kim, Min Zhang, Phaik Lyn Oh, Nicholas C. K. Heng, Prabhu B. Patil, Nathalie Juge, Donald MacKenzie, Bruce M. Pearson, Alla Lapidus, Eileen Dalin, Hope Tice, Eugene Goltsman, Miriam Land, Loren Hauser, Natalia Ivanova, Nikos C. Kyrpides, Jens Walter - PLoS Genetics 2011 cited by 309

  18. Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis

    Authors: Natalia Ivanova, Alexeï Sorokin, Iain Anderson, Nathalie Galleron, Benjamin Candelon, Vinayak Kapatral, Anamitra Bhattacharyya, Gary Reznik, Natalia Mikhailova, Alla Lapidus, Lien Chu, Michael Mazur, Eugene Goltsman, Niels Larsen, Mark D’Souza, Theresa L. Walunas, Yuri Grechkin, Gordon D. Pusch, Robert Haselkorn, Michael Fonstein, S. Dusko Ehrlich, Ross Overbeek, Nikos C. Kyrpides - Nature 2003 cited by 831

  19. The Complete Genome Sequence of Cupriavidus metallidurans Strain CH34, a Master Survivalist in Harsh and Anthropogenic Environments

    Authors: Paul Janssen, Rob Van Houdt, Hugo Moors, Pieter Monsieurs, Nicolas Morin, Arlette Michaux, Mohammed Abderrafi Benotmane, Natalie Leys, Tatiana Vallaeys, Alla Lapidus, Sébastien Monchy, Claudine Médigue, Safiyh Taghavi, S. McCorkle, John J. Dunn, Daniël van der Lelie, Max Mergeay - PLoS ONE 2010 cited by 334

  20. Methylotrophy in Methylobacterium extorquens AM1 from a Genomic Point of View

    Authors: Ludmila Chistoserdova, Sung-Wei Chen, Alla Lapidus, Mary E. Lidstrom - Journal of Bacteriology 2003 cited by 304

  21. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

    Authors: Elena Fernández‐Fueyo, Francisco J. Ruiz‐Dueñas, Patrícia Ferreira, Dimitrios Floudas, David S. Hibbett, Paulo Canessa, Luis Larrondo, Tim Y. James, Daniela Seelenfreund, Sergio Lobos, Rubén Polanco, Mario Tello, Yoichi Honda, Takahito Watanabe, Takashi Watanabe, Jae San Ryu, Christian P. Kubicek, Monika Schmoll, Jill Gaskell, Kenneth E. Hammel, Franz J. St John, Amber Vanden Wymelenberg, Grzegorz Sabat, Sandra Splinter BonDurant, Khajamohiddin Syed, Jagjit S. Yadav, HarshaVardhan Doddapaneni, Venkataramanan Subramanian, José Luis Lavín, José A. Oguiza, Gúmer Pérez, Antonio G. Pisabarro, Lucı́a Ramı́rez, Francisco Santoyo‐González, Emma R. Master, Pedro M. Coutinho, Bernard Henrissat, Vincent Lombard, Jon Magnuson, Ursula Kües, Chiaki Hori, Kiyohiko Igarashi, Masahiro Samejima, Benjamin W. Held, Kerrie Barry, Kurt LaButti, Alla Lapidus, Erika Lindquist, Susan Lucas, Robert Riley, Asaf Salamov, Dirk Hoffmeister, Daniel Schwenk, Yitzhak Hadar, Oded Yarden, Ronald P. de Vries, Ad Wiebenga, Jan Stenlid, Daniel C. Eastwood, Igor V. Grigoriev, Randy M. Berka, Robert A. Blanchette, Phil Kersten, Ángel T. Martı́nez, Rafael Vicuña, Dan Cullen - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 cited by 296

  22. The Plant Cell Wall–Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

    Authors: Daniel C. Eastwood, Dimitrios Floudas, Manfred Binder, Andrzej Majcherczyk, Patrick Schneider, Andrea Aerts, Fred O. Asiegbu, Scott Baker, Kerrie Barry, Mika Bendiksby, Melanie Blumentritt, Pedro M. Coutinho, Dan Cullen, Ronald P. de Vries, Allen C. Gathman, Barry Goodell, Bernard Henrissat, Katarina Ihrmark, Håvard Kauserud, Annegret Kohler, Kurt LaButti, Alla Lapidus, José Luis Lavín, Yong‐Hwan Lee, Erika Lindquist, Walt W. Lilly, Susan Lucas, Emmanuelle Morin, Claude Murat, José A. Oguiza, Jongsun Park, Antonio G. Pisabarro, Robert Riley, Anna Rosling, Asaf Salamov, Olaf Schmidt, Jeremy Schmutz, Inger Skrede, Jan Stenlid, Ad Wiebenga, Xinfeng Xie, Ursula Kües, David S. Hibbett, Dirk Hoffmeister, Nils Högberg, Francis Martin, Igor V. Grigoriev, Sarah C. Watkinson - Science 2011 cited by 618

  23. A korarchaeal genome reveals insights into the evolution of the Archaea

    Authors: James G. Elkins, Mircea Podar, David E. Graham, Kira S. Makarova, Yuri I. Wolf, Lennart Randau, Brian P. Hedlund, Céline Brochier‐Armanet, Victor Kunin, Iain Anderson, Alla Lapidus, Eugene Goltsman, Kerrie Barry, Eugene V. Koonin, Philip Hugenholtz, Nikos C. Kyrpides, Gerhard Wanner, Paul Richardson, Martin Keller, Karl O. Stetter - National Academy of Sciences, Proceedings of the National Academy of Sciences 2008 cited by 290

  24. Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth

    Authors: Dylan Chivian, Eoin Brodie, Eric J. Alm, David Culley, Paramvir Dehal, Todd Z. DeSantis, Thomas M. Gihring, Alla Lapidus, Li‐Hung Lin, Stephen Lowry, Duane P. Moser, Paul M. Richardson, Gordon Southam, Greg Wanger, Lisa M. Pratt, Gary L. Andersen, Terry C. Hazen, Fred J. Brockman, Adam P. Arkin, T. C. Onstott - Science 2008 cited by 533