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Fiona S. L. Brinkman

Active 1998–2024

87
Papers
34,568
Citations
68
h-index
83
i10-index

Citations

Citations per year for Fiona S. L. Brinkman1966: 1 citations1971: 1 citations1985: 1 citations1990: 1 citations1992: 1 citations1993: 1 citations1999: 3 citations2000: 8 citations2001: 87 citations2002: 106 citations2003: 116 citations2004: 129 citations2005: 145 citations2006: 133 citations2007: 147 citations2008: 217 citations2009: 208 citations2010: 266 citations2011: 257 citations2012: 328 citations2013: 314 citations2014: 322 citations2015: 331 citations2016: 278 citations2017: 293 citations2018: 311 citations2019: 990 citations2020: 1,179 citations2021: 1,160 citations2022: 1,081 citations2023: 707 citations2024: 1,355 citations2025: 601 citations2026: 31 citations1967–1970: no citations, so these years are not shown1972–1984: no citations, so these years are not shown1986–1989: no citations, so these years are not shown1991: no citations, so this year is not shown1994–1998: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,080 citing papers, 19.3% of this breakdownChina: 1,702 citing papers, 10.7% of this breakdownUnited Kingdom: 1,144 citing papers, 7.2% of this breakdownCanada: 999 citing papers, 6.3% of this breakdownGermany: 899 citing papers, 5.6% of this breakdownFrance: 601 citing papers, 3.8% of this breakdownAustralia: 511 citing papers, 3.2% of this breakdownIndia: 467 citing papers, 2.9% of this breakdownSpain: 433 citing papers, 2.7% of this breakdownItaly: 432 citing papers, 2.7% of this breakdownSwitzerland: 346 citing papers, 2.2% of this breakdownDenmark: 340 citing papers, 2.1% of this breakdown
0%19.3%Other 31.3%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology56%
  • Medicine12.3%
  • Environmental Science10%
  • Agricultural and Biological Sciences8.3%
  • Immunology and Microbiology6.7%
  • Computer Science2.3%
  • Other4.4%

Topics

  • Antibiotic Resistance in Bacteria7.6%
  • Genomics and Phylogenetic Studies5.8%
  • Bacterial biofilms and quorum sensing5.5%
  • Bacteriophages and microbial interactions3.6%
  • Bacterial Genetics and Biotechnology3.6%
  • Gut microbiota and health3%
  • Other70.9%

Coauthors

All papers

Open in search
  1. CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

    Authors: Brian Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna‐Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y Min, Anatoly Miroshnichenko, Hiu‐Ki R. Tran, Rafik El Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun Sharma, Emily Bordeleau, A Pawłowski, Haley L. Zubyk, Damion Dooley, Emma Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William Hsiao, Gary Van Domselaar, Andrew G. McArthur - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 3,312

  2. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

    Authors: Brian P. Alcock, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 2,141

  3. CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

    Authors: Baofeng Jia, Amogelang R. Raphenya, Brian Alcock, Nicholas Waglechner, Peiyao Guo, Kara K. Tsang, Briony A. Lago, Biren M. Dave, Sheldon K. Pereira, Arjun Sharma, Sachin Doshi, Mélanie Courtot, Raymond Lo, Laura E. Williams, Jonathan G. Frye, Tariq Elsayegh, Daim Sardar, Erin L. Westman, A Pawłowski, Timothy A. Johnson, Fiona S. L. Brinkman, Gerard D. Wright, Andrew G. McArthur - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 2,819

  4. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

    Authors: Nancy Y. Yu, James R. Wagner, Matthew R. Laird, Gabor Melli, Sébastien Rey, Raymond Lo, Phuong Dao, Süleyman Cenk Sahinalp, Martin Ester, Leonard J. Foster, Fiona S. L. Brinkman - Bioinformatics, Bioinform. 2010 cited by 2,574

  5. IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

    Authors: Claire Bertelli, Matthew R. Laird, Kelly P. Williams, Britney Y. Lau, Gemma Hoad, Geoffrey L. Winsor, Fiona S. L. Brinkman - Nucleic Acids Research, Nucleic Acids Res. 2017 cited by 1,587

  6. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

    Authors: C. Kendall Stover, X. Q. Pham, Alice L. Erwin, Sentaro Mizoguchi, Paul Warrener, Mark J. Hickey, Fiona S. L. Brinkman, WENDY O. HUFNAGLE, Diane Kowalik, M. Lagrou, Richard L. Garber, L. Goltry, E. Tolentino, Shannon Westbrock-Wadman, Yuting Yuan, Linnea L. Brody, Silvija N. Coulter, Kim R. Folger, Arnold Kas, Karen Larbig, Regina Lim, Keith Smith, David H. Spencer, Gane Ka‐Shu Wong, Zaining Wu, Ian T. Paulsen, Jonathan Reizer, Milton H. Saier, Robert E. W. Hancock, Stephen Lory, Maynard V. Olson - Nature 2000 cited by 4,643

  7. FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration

    Authors: Damion Dooley, Emma Griffiths, Gurinder S. Gosal, Pier Luigi Buttigieg, Robert Hoehndorf, Matthew Lange, Lynn M. Schriml, Fiona S. L. Brinkman, William Hsiao - npj Science of Food 2018 cited by 354

  8. Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database

    Authors: Geoffrey L. Winsor, Emma Griffiths, Raymond Lo, Bhavjinder K. Dhillon, Julie A. Shay, Fiona S. L. Brinkman - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 1,140

  9. InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation

    Authors: Karin Breuer, Amir Foroushani, Matthew R. Laird, Carol Chen, Anastasia Sribnaia, Raymond Lo, Geoffrey L. Winsor, Robert E. W. Hancock, Fiona S. L. Brinkman, David J. Lynn - Nucleic Acids Research, Nucleic Acids Res. 2012 cited by 1,386

  10. Decreasing antibiotic use, the gut microbiota, and asthma incidence in children: evidence from population-based and prospective cohort studies

    Authors: David M. Patrick, Hind Sbihi, Darlene Dai, Abdullah Mamun, Drona Rasali, Caren Rose, Fawziah Marra, Rozlyn C. T. Boutin, Charisse Petersen, Leah T. Stiemsma, Geoffrey L. Winsor, Fiona S. L. Brinkman, Anita L. Kozyrskyj, Meghan B. Azad, Allan B. Becker, Piush J. Mandhane, Theo J Moraes, Malcolm R. Sears, Padmaja Subbarao, B. Brett Finlay, Stuart E. Turvey - The Lancet Respiratory Medicine 2020 cited by 248

  11. The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

    Authors: Christine G. Elsik, Ross L. Tellam, Kim C. Worley, Richard A. Gibbs, Donna M. Muzny, George M. Weinstock, David L. Adelson, Evan E. Eichler, Laura Elnitski, Roderic Guigó, Debora L. Hamernik, S M Kappes, Harris A. Lewin, David J. Lynn, F. W. Nicholas, Alexandre Reymond, Monique Rijnkels, Loren C. Skow, Evgeny M. Zdobnov, Lawrence B. Schook, James E. Womack, Tyler Alioto, Stylianos E. Antonarakis, Alex Astashyn, Charles E. Chapple, Hsiu-Chuan Chen, Jacqueline Chrast, Francisco Câmara, Olga Ermolaeva, Charlotte N. Henrichsen, Wratko Hlavina, Yuri Kapustin, Boris Kiryutin, Paul Kitts, Felix Kokocinski, Melissa Landrum, Donna Maglott, Kim D. Pruitt, Victor Sapojnikov, Stephen M. J. Searle, Victor Solovyev, Alexandre Souvorov, Catherine Ucla, Carine Wyss, Juan Manuel Anzola, Daniel Gerlach, Eran Elhaik, Dan Graur, Justin Reese, R. C. Edgar, John C. McEwan, Gemma M. Payne, Joy M Raison, Thomas Junier, Evgenia V. Kriventseva, Eduardo Eyras, Mireya Plass, Ravikiran Donthu, Denis M. Larkin, James M. Reecy, Mary Qu Yang, Lin Chen, Ze Cheng, Carol G. Chitko-McKown, George E. Liu, Lakshmi K. Matukumalli, Jiuzhou Song, Bin Zhu, Daniel G. Bradley, Fiona S. L. Brinkman, Lilian Pek Lian Lau, Matthew D. Whiteside, Angela M. Walker, Thomas T. Wheeler, Theresa Casey, J. Bruce German, Danielle G. Lemay, Nauman J. Maqbool, Adrian Molenaar, Seongwon Seo, Paul Stothard, Cynthia L. Baldwin, R. Baxter, Candice Brinkmeyer‐Langford, Wendy C. Brown, Christopher Childers, Timothy Connelley, Shirley A. Ellis, K. L. Fritz, Elizabeth Glass, Carolyn T.A. Herzig, Antti Iivanainen, Kevin K. Lahmers, Anna K. Bennett, C. Michael Dickens, James Gilbert, Darren E. Hagen, Hanni Salih, Jan Aerts, Alexandre Rodrigues Caetano and 207 more - Science 2009 cited by 1,349

  12. Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands

    Authors: Finlay Maguire, Baofeng Jia, Kristen L. Gray, Wing Yin Venus Lau, Robert G. Beiko, Fiona S. L. Brinkman - Microbial Genomics 2020 cited by 158

  13. Modulation of the TLR-Mediated Inflammatory Response by the Endogenous Human Host Defense Peptide LL-37

    Authors: Neeloffer Mookherjee, Kelly L. Brown, Dawn M. E. Bowdish, Silvana Doria, Reza Falsafi, Karsten Hokamp, Fiona Roche, Ruixia Mu, Gregory Doho, Jelena Pistolic, Jon-Paul S. Powers, Jenny Bryan, Fiona S. L. Brinkman, Robert E. W. Hancock - The Journal of Immunology 2006 cited by 558

  14. Improved genomic island predictions with IslandPath-DIMOB

    Authors: Claire Bertelli, Fiona S. L. Brinkman - Bioinformatics, Bioinform. 2018 cited by 223

  15. Function ofPseudomonasPorins in Uptake and Efflux

    Authors: Robert E. W. Hancock, Fiona S. L. Brinkman - Annual Review of Microbiology 2002 cited by 308

  16. Composition and Associations of the Infant Gut Fungal Microbiota with Environmental Factors and Childhood Allergic Outcomes

    Authors: Rozlyn C. T. Boutin, Hind Sbihi, Ryan J. McLaughlin, Aria S Hahn, Kishori M. Konwar, Rachelle Loo, Darlene Dai, Charisse Petersen, Fiona S. L. Brinkman, Geoffrey L. Winsor, Malcolm R. Sears, Theo J. Moraes, Allan B. Becker, Meghan B. Azad, Piush J. Mandhane, Padmaja Subbarao, Stuart E. Turvey, B. Brett Finlay - mBio 2021 cited by 68

  17. The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse

    Authors: Michael P. McLeod, Robin M. Warren, William Hsiao, Naoto Araki, Matthew Myhre, Clinton Fernandes, Daisuke Miyazawa, Wendy Wong, Anita L. Lillquist, Dennis Wang, Manisha Dosanjh, Hirofumi Hara, Anca S. Petrescu, Ryan D. Morin, George Yang, Jeff Stott, Jacqueline E. Schein, Heesun Shin, Duane E. Smailus, Asim Siddiqui, Marco A. Marra, Steven J.M. Jones, Robert A. Holt, Fiona S. L. Brinkman, Keisuke Miyauchi, Masao Fukuda, Julian Davies, William W. Mohn, Lindsay D. Eltis - National Academy of Sciences, Proceedings of the National Academy of Sciences 2006 cited by 635

  18. Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

    Authors: Sandra Orchard, Samuel Kerrien, Sara Abbani, Bruno Aranda, Jignesh Bhate, Shelby Bidwell, Alan Bridge, Leonardo Briganti, Fiona S. L. Brinkman, Gianni Cesareni, Andrew Chatr‐aryamontri, Émilie Chautard, Carol Chen, Marine Dumousseau, Johannes B. Goll, Robert E. W. Hancock, Linda I. Hannick, Igor Jurišica, Jyoti Khadake, David J. Lynn, Usha Mahadevan, Livia Perfetto, Arathi Raghunath, Sylvie Ricard‐Blum, Bernd Roechert, Łukasz Salwiński, Volker Stümpflen, Mike Tyers, Peter Uetz, Ioannis Xénarios, Henning Hermjakob - Nature Methods 2012 cited by 576

  19. Bacterial cyclic diguanylate signaling networks sense temperature

    Authors: Henrik Almblad, Trevor E. Randall, Fanny Liu, Katherine Leblanc, Ryan A. Groves, Weerayuth Kittichotirat, Geoffrey L. Winsor, Nicolas Fournier, Emily Au, Julie Groizeleau, Jacquelyn D. Rich, Yuefei Lou, Elise Granton, Laura K. Jennings, Larissa A. Singletary, Tara M. L. Winstone, Nathan Good, Roger E. Bumgarner, Michael F. Hynes, Manu Singh, María Silvina Stietz, Fiona S. L. Brinkman, Ayush Kumar, Ann Karen C. Brassinga, Matthew R. Parsek, Boo Shan Tseng, Ian A. Lewis, Bryan G. Yipp, Justin L. MacCallum, Joe J. Harrison - Nature Communications 2021 cited by 70

  20. Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

    Authors: Craig Winstanley, Morgan G. I. Langille, Joanne L. Fothergill, Irena Kukavica‐Ibrulj, Catherine Paradis‐Bleau, François Sanschagrin, Nicholas R. Thomson, Geoffrey L. Winsor, Michael A. Quail, Nicola Lennard, Alexandra Bignell, Louise Clarke, Kathy Seeger, David Saunders, David Harris, Julian Parkhill, Robert E. W. Hancock, Fiona S. L. Brinkman, Roger C. Lévesque - Genome Research 2008 cited by 340

  21. SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology

    Authors: Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly Weedmark, Rahat Zaheer, Lee S. Katz, Céline Nadon, Aleisha Reimer, Eduardo N. Taboada, Robert G. Beiko, William Hsiao, Fiona S. L. Brinkman, Morag Graham, Gary Van Domselaar - Microbial Genomics 2017 cited by 162

  22. PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations

    Authors: Wing Yin Venus Lau, Gemma Hoad, Vivian Jin, Geoffrey L. Winsor, Ashmeet Madyan, Kristen L. Gray, Matthew R. Laird, Raymond Lo, Fiona S. L. Brinkman - Nucleic Acids Research, Nucleic Acids Res. 2020 cited by 45

  23. IslandPath: aiding detection of genomic islands in prokaryotes

    Authors: William W. L. Hsiao, Ivan Wan, Steven J. M. Jones, Fiona S. L. Brinkman - Bioinformatics, Bioinform. 2003 cited by 395

  24. Detecting genomic islands using bioinformatics approaches

    Authors: Morgan G. I. Langille, William Hsiao, Fiona S. L. Brinkman - Nature Reviews Microbiology 2010 cited by 278