Gaurab Mukherjee

• Elissa J. Chesler5
• Guy Cochrane4
• Hamish McWilliam4
• Jake Emerson4
• Nadeem Faruque4
• Quan Lin4
• Rasko Leinonen4
• Rodrigo Lopez4
• Siamak Sobhany4
• Ahmet Oezcimen3
• Alastair Baldwin3
• Alvis Brazma3
• Beena M. Kadakkuzha3
• Dariusz Lorenc3
• David O. Walton3
• Ele Holloway3
• Francesco Nardone3
• Gemma Hoad3
• Georgi Kolishovski3
• Gonzalo Garcia Lara3
• Govindarajan Kunde‐Ramamoorthy3
• Hao He3
• Kirsty Bates3
• Lawrence Bower3

1. An integrated encyclopedia of DNA elements in the human genome

   Authors: Ian Dunham, Ewan Birney, Javier Herrero, Steven P. Wilder, Damian Keefe, Kathryn Beal, Paul Flicek, Nathan Johnson, Daniel Sobral, Anshul Kundaje, Serafim Batzoglou, Nadine Hussami, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Marc A. Schaub, Shelley F. Aldred, Patrick Collins, Nathan D. Trinklein, Carrie A. Davis, Felix Schlesinger, T Gingeras, Alex Dobin, Wei Lin, Chenghai Xue, Chris Zaleski, Michael T. Baer, Philippe Batut, Kimberly Bell, Sudipto Chakrabortty, Jörg Drenkow, Megan Fastuca, Kata Fejes-Toth, Assaf Gordon, Sonali Jha, Jonathan Preall, Kimberly Presaud, Lei-Hoon See, Huaien Wang, Gregory J. Hannon, Francis Doyle, Scott A. Tenenbaum, Charles B. Epstein, Noam Shoresh, B Bernstein, Tarjei S. Mikkelsen, Alon Goren, Oren Ram, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Timothy Durham, Manching Ku, Thanh Truong, Seth Frietze, Peggy Farnham, Heather Witt, Jennifer Harrow, Timothy J. Hubbard, Felix Kokocinski, Bronwen Aken, Daniel Barrell, Gemma Barson, Andrew Berry, Alexandra Bignell, Veronika Boychenko, Claire Davidson, Gloria Despacio-Reyes, Adam Frankish, James Gilbert, José M. González, Ed Griffiths, Toby Hunt, Mike Kay, Jane Loveland, Deepa Manthravadi, Jonathan Mudge, Gaurab Mukherjee, Gary Saunders, Stephen Searle, Catherine Snow, Charlie Steward, Electra Tapanari, Laurens Wilming, Amonida Zadissa, Rajinder Kaul, Jainab Khatun, Morgan C. Giddings, John Wrobel, Brian A. Risk, Bryan R. Lajoie, Amartya Sanyal, Job Dekker, Gaurav Jain, Stephen G. Landt, M Snyder, Nick Addleman, Keith Bettinger, Alan P. Boyle, Philip Cayting - Nature 2012 cited by 19,606

2. GENCODE: The reference human genome annotation for The ENCODE Project

   Authors: Jennifer Harrow, Adam Frankish, José M. González, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Bronwen Aken, Daniel Barrell, Amonida Zadissa, Stephen M. J. Searle, If Barnes, Alexandra Bignell, Veronika Boychenko, Toby Hunt, Mike Kay, Gaurab Mukherjee, Jeena Rajan, Gloria Despacio-Reyes, Gary Saunders, Charles A. Steward, Rachel Harte, Michael Lin, Cédric Howald, Andrea Tanzer, Thomas Derrien, Jacqueline Chrast, Nathalie Walters, Suganthi Balasubramanian, Baikang Pei, Michael L. Tress, José Manuel Rodrı́guez, Iakes Ezkurdia, Jeltje van Baren, Michael R. Brent, David Haussler, Manolis Kellis, Alfonso Valencia, Alexandre Reymond, Mark Gerstein, Roderic Guigó, Tim Hubbard - Genome Research 2012 cited by 5,035

3. ArrayExpress - a public repository for microarray gene expression data at the EBI

   Authors: Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Niran Abeygunawardena, Sergio Contrino, Richard Coulson, Anna Farne, Gonzalo Garcia Lara, Ele Holloway, Misha Kapushesky, P. Lilja, Gaurab Mukherjee, Ahmet Oezcimen, Tim F. Rayner, Philippe Rocca-Serra, Anjan Sharma, Susanna-Assunta Sansone, Alvis Brazma - Nucleic Acids Research, Nucleic Acids Res. 2004 cited by 1,092

4. Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes

   Authors: Molly A. Bogue, Robyn L. Ball, Vivek M. Philip, David O. Walton, Matthew H Dunn, Georgi Kolishovski, Anna Lamoureux, Matthew Gerring, Hongping Liang, Jake Emerson, Timothy M. Stearns, Hao He, Gaurab Mukherjee, John Bluis, Sejal Desai, Beth A. Sundberg, Beena M. Kadakkuzha, Govindarajan Kunde‐Ramamoorthy, Elissa J. Chesler - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 31

5. Mouse phenome database: curated data repository with interactive multi-population and multi-trait analyses

   Authors: Molly A. Bogue, Robyn L. Ball, David O. Walton, Matthew H Dunn, Georgi Kolishovski, Alexander Berger, Anna Lamoureux, Stephen C. Grubb, Matthew Gerring, Matthew Kim, Hongping Liang, Jake Emerson, Timothy M. Stearns, Hao He, Gaurab Mukherjee, John Bluis, Sara L.M. Davis, Sejal Desai, Beth A. Sundberg, Beena M. Kadakkuzha, Govindarajan Kunde‐Ramamoorthy, Vivek M. Philip, Elissa J. Chesler - Mammalian Genome 2023 cited by 16

6. Mouse Phenome Database: a data repository and analysis suite for curated primary mouse phenotype data

   Authors: Molly A. Bogue, Vivek M. Philip, David O. Walton, Stephen C. Grubb, Matthew H Dunn, Georgi Kolishovski, Jake Emerson, Gaurab Mukherjee, Timothy M. Stearns, Hao He, Vinita Sinha, Beena M. Kadakkuzha, Govindarajan Kunde‐Ramamoorthy, Elissa J. Chesler - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 84

7. EMBL Nucleotide Sequence Database in 2006

   Authors: Tamara Kulikova, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Lawrence Bower, Paul Browne, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, Gemma Hoad, Carola Kanz, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Sheila Plaister, Siamak Sobhany, Peter Stoehr, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler - Nucleic Acids Research, Nucleic Acids Res. 2006 cited by 162

8. Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database

   Authors: Guy Cochrane, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, James K. Bonfield, Lawrence Bower, Paul Browne, Matias Castro, Tony Cox, Fehmi Demiralp, Ruth Y. Eberhardt, Nadeem Faruque, Gemma Hoad, Mikyung Jang, Tamara Kulikova, Alberto Labarga, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Sheila Plaister, Stephen Robinson, Siamak Sobhany, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler, Tim J. P. Hubbard, Ewan Birney - Nucleic Acids Research, Nucleic Acids Res. 2007 cited by 69

9. Petabyte-scale innovations at the European Nucleotide Archive

   Authors: Guy Cochrane, Ruth Akhtar, James K. Bonfield, Lawrence Bower, Fehmi Demiralp, Nadeem Faruque, Richard Gibson, Gemma Hoad, Tim J. P. Hubbard, Christopher I. Hunter, Mikyung Jang, Szilveszter Juhos, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Sheila Plaister, Rajesh Radhakrishnan, Stephen Robinson, Siamak Sobhany, Petra ten Hoopen, Robert Vaughan, Vadim Zalunin, Ewan Birney - Nucleic Acids Research, Nucleic Acids Res. 2008 cited by 104

10. Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease

    Authors: M. Eileen Dolan, David P. Hill, Gaurab Mukherjee, Monica McAndrews, Elissa J. Chesler, Judith A. Blake - Scientific Reports 2020 cited by 46

11. MIAME/Plant – adding value to plant microarrray experiments

    Authors: Philip Zimmermann, Beatrice Schildknecht, David J Craigon, M. Garcia-Hernandez, Wilhelm Gruissem, Sean May, Gaurab Mukherjee, Helen Parkinson, Seung Y. Rhee, Ulrich Wagner, Lars Hennig - Plant Methods 2006 cited by 95

12. EMBL Nucleotide Sequence Database: developments in 2005

    Authors: Guy Cochrane, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Wendy Baker, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Paul Browne, Alexandra van den Broek, Matias Castro, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, John Gamble, Carola Kanz, Tamara Kulikova, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Michelle McHale, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Siamak Sobhany, Peter Stoehr, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler - Nucleic Acids Research, Nucleic Acids Res. 2005 cited by 91

13. ArrayExpress: a public database of gene expression data at EBI

    Authors: Philippe Rocca‐Serra, Alvis Brāzma, Helen Parkinson, Uğis Sarkans, Mohammadreza Shojatalab, Sergio Contrino, Jaak Vilo, Niran Abeygunawardena, Gaurab Mukherjee, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Susanna‐Assunta Sansone - Comptes Rendus Biologies 2003 cited by 86

14. The ArrayExpress gene expression database: a software engineering and implementation perspective

    Authors: Ugis Sarkans, Helen E. Parkinson, Gonzalo Garcia Lara, Ahmet Oezcimen, Anjan Sharma, Niran Abeygunawardena, Sergio Contrino, Ele Holloway, Philippe Rocca-Serra, Gaurab Mukherjee, Mohammadreza Shojatalab, Misha Kapushesky, Susanna-Assunta Sansone, Anna Farne, Tim F. Rayner, Alvis Brazma - Computer applications in the biosciences, Bioinform. 2004 cited by 43

15. Curating gene sets: challenges and opportunities for integrative analysis

    Authors: Jason A. Bubier, David P. Hill, Gaurab Mukherjee, Timothy Reynolds, Erich J. Baker, Alexander Berger, Jake Emerson, Judith A. Blake, Elissa J. Chesler - Database, Database J. Biol. Databases Curation 2019 cited by 5

All 15 papers shown.