Andrea Tanzer
Active 2004–2024
- 28
- Papers
- 22,412
- Citations
- 26
- h-index
- 27
- i10-index
Citations
Citation sources
Countries
Institutions
- Harvard University0.9%
- Stanford University0.7%
- Howard Hughes Medical Institute0.6%
- Chinese Academy of Sciences0.6%
- Broad Institute0.6%
- Yale University0.5%
- Other96.1%
Fields
- Biochemistry, Genetics and Molecular Biology83.4%
- Medicine8.2%
- Agricultural and Biological Sciences3%
- Immunology and Microbiology2.3%
- Neuroscience1.2%
- Computer Science0.4%
- Other1.5%
Topics
- Cancer-related molecular mechanisms research14.9%
- RNA modifications and cancer10.5%
- RNA Research and Splicing8.9%
- MicroRNA in disease regulation4.9%
- Circular RNAs in diseases4.7%
- RNA and protein synthesis mechanisms4.2%
- Other51.9%
Coauthors
- Ivo L. Hofacker11
- Peter F. Stadler9
- Julien Lagarde6
- Mark Gerstein6
- Carrie Davis5
- Sarah Djebali5
- Alexander Dobin4
- Baikang Pei4
- Christoph Flamm4
- Jennifer Harrow4
- José M. González4
- Jörg Drenkow4
- Roderic Guigó4
- Alexandre Reymond3
- Chris Zaleski3
- Claudia Fried3
- Cristina Sisu3
- Cédric Howald3
- Jacqueline Chrast3
- Jan O. Korbel3
- Jana Hertel3
- Jörg Hackermüller3
- Kristin Missal3
- M Snyder3
All papers
- Landscape of transcription in human cells
Authors: Sarah Djebali, Carrie Davis, Angelika Merkel, Alexander Dobin, Timo Lassmann, A Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger, Chenghai Xue, Georgi K. Marinov, Jainab Khatun, Brian A. Williams, Chris Zaleski, Joel Rozowsky, Maik Röder, Felix Kokocinski, Rehab Abdelhamid, Tyler Alioto, Igor Antoshechkin, Michael T. Baer, Nadav Bar, Philippe Batut, Kimberly Bell, Ian Bell, Sudipto K. Chakrabortty, Xian Chen, Jacqueline Chrast, João Curado, Thomas Derrien, Jörg Drenkow, Erica Dumais, Jacqueline Dumais, Radha Duttagupta, Emilie Falconnet, Meagan Fastuca, Kata Fejes-Toth, Pedro G. Ferreira, Sylvain Foissac, Melissa J. Fullwood, Hui Gao, David González, Assaf Gordon, Harsha P. Gunawardena, Cédric Howald, Sonali Jha, Rory Johnson, Philipp Kapranov, Brandon King, Colin Kingswood, Oscar Junhong Luo, Eddie Park, Kimberly Persaud, Jonathan Preall, Paolo Ribeca, Brian A. Risk, Daniel Robyr, Michael Sammeth, Lorian Schaffer, Lei-Hoon See, Atif Shahab, Jørgen Skancke, Ana Maria Suzuki, Hazuki Takahashi, Hagen Tilgner, Diane Trout, Nathalie Walters, Huaien Wang, John A. Wrobel, Yanbao Yu, Xiaoan Ruan, Yoshihide Hayashizaki, Jennifer Harrow, Mark Gerstein, Tim Hubbard, Alexandre Reymond, Stylianos E. Antonarakis, Gregory J. Hannon, Morgan C. Giddings, Yijun Ruan, B Wold, Piero Carninci, Roderic Guigó, T Gingeras - Nature 2012 cited by 5,413
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Authors: Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Grégory Guernec, David Martı́n, Angelika Merkel, David G. Knowles, Julien Lagarde, Lavanya Veeravalli, Xiaoan Ruan, Yijun Ruan, Timo Lassmann, Piero Carninci, James Brown, Leonard Lipovich, José M. González, Mark Thomas, Carrie Davis, Ramin Shiekhattar, T Gingeras, Tim Hubbard, Cédric Notredame, Jennifer Harrow, Roderic Guigó - Genome Research 2012 cited by 5,217
- GENCODE: The reference human genome annotation for The ENCODE Project
Authors: Jennifer Harrow, Adam Frankish, José M. González, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Bronwen Aken, Daniel Barrell, Amonida Zadissa, Stephen M. J. Searle, If Barnes, Alexandra Bignell, Veronika Boychenko, Toby Hunt, Mike Kay, Gaurab Mukherjee, Jeena Rajan, Gloria Despacio-Reyes, Gary Saunders, Charles A. Steward, Rachel Harte, Michael Lin, Cédric Howald, Andrea Tanzer, Thomas Derrien, Jacqueline Chrast, Nathalie Walters, Suganthi Balasubramanian, Baikang Pei, Michael L. Tress, José Manuel Rodrı́guez, Iakes Ezkurdia, Jeltje van Baren, Michael R. Brent, David Haussler, Manolis Kellis, Alfonso Valencia, Alexandre Reymond, Mark Gerstein, Roderic Guigó, Tim Hubbard - Genome Research 2012 cited by 5,035
- A comparative encyclopedia of DNA elements in the mouse genome
Authors: Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Wei-Sheng Wu, Tyrone Ryba, Richard Sandstrom, Zhihai Ma, Carrie Davis, Benjamin D. Pope, Yin Shen, Dmitri D. Pervouchine, Sarah Djebali, Robert E. Thurman, Rajinder Kaul, Eric Rynes, Anthony Kirilusha, Georgi K. Marinov, Brian A. Williams, Diane Trout, Henry Amrhein, Katherine Fisher-Aylor, Igor Antoshechkin, Gilberto DeSalvo, Lei-Hoon See, Meagan Fastuca, Jörg Drenkow, Chris Zaleski, Alexander Dobin, Pablo Prieto, Julien Lagarde, Giovanni Bussotti, Andrea Tanzer, Olgert Denas, Kanwei Li, M. A. Bender, Miaohua Zhang, Rachel Byron, Mark Groudine, David McCleary, Long Pham, Zhen Ye, Samantha Kuan, Lee Edsall, Yi-Chieh Wu, Matthew D. Rasmussen, Mukul S. Bansal, Manolis Kellis, Cheryl A. Keller, Christapher S. Morrissey, Tejaswini Mishra, Deepti Jain, Nergiz Doğan, Robert S. Harris, Philip Cayting, Trupti Kawli, Alan P. Boyle, Ghia Euskirchen, Anshul Kundaje, Shin Lin, Yiing Lin, Camden Jansen, Venkat S. Malladi, Melissa Cline, Drew T. Erickson, Vanessa M. Kirkup, Katrina Learned, Cricket A. Sloan, Kate R. Rosenbloom, Beatriz Lacerda de Sousa, Kathryn Beal, Miguel Pignatelli, Paul Flicek, Jin Lian, Tamer Kahveci, Dongwon Lee, W. James Kent, Miguel Ramalho Santos, Javier Herrero, Cédric Notredame, Audra Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio Neri, Morgan Diegel, Theresa K. Canfield, Peter J. Sabo, Matthew S. Wilken, Thomas A. Reh, Erika Giste, Anthony Shafer, Tanya Kutyavin, Eric Haugen, Douglas Dunn, Alex Reynolds, Shane Neph, Richard Humbert, R. Scott Hansen, Marella de Bruijn and 37 more - Nature 2014 cited by 1,949
- The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms
Authors: Renata Kleinová, Vinod Rajendra, Alina F. Leuchtenberger, Claudio Lo Giudice, Cornelia Vesely, Utkarsh Kapoor, Andrea Tanzer, Sophia Derdak, Ernesto Picardi, Michael F. Jantsch - Nucleic Acids Research 2023 cited by 52
- Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome
Authors: Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, Bailey Godwin, Fabian Grubert, Jan Fredrik Simons, Philip M. Kim, Dean Palejev, Nicholas Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, Abbey Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark Gerstein, Michael D. Miller, M Snyder - Science 2007 cited by 1,190
- A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Authors: Steve Hoffmann, Christian Otto, Gero Doose, Andrea Tanzer, David Langenberger, Sabina Christ, Manfred Kunz, Lesca M. Holdt, Daniel Teupser, Jörg Hackermüller, Peter F. Stadler - Genome biology 2014 cited by 291
- Predicting RNA secondary structures from sequence and probing data
Authors: Ronny Lorenz, Michael T. Wolfinger, Andrea Tanzer, Ivo L. Hofacker - Methods 2016 cited by 127
- Molecular Evolution of a MicroRNA Cluster
Authors: Andrea Tanzer, Peter F. Stadler - Journal of Molecular Biology 2004 cited by 630
- The GENCODE pseudogene resource
Authors: Baikang Pei, Cristina Sisu, Adam Frankish, Cédric Howald, Lukas Habegger, Xinmeng Jasmine Mu, Rachel Harte, Suganthi Balasubramanian, Andrea Tanzer, Mark Diekhans, Alexandre Reymond, Tim Hubbard, Jennifer Harrow, Mark Gerstein - Genome biology 2012 cited by 349
- AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements
Authors: Jörg Fallmann, Vitaly Sedlyarov, Andrea Tanzer, Pavel Kovarik, Ivo L. Hofacker - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 145
- Comparative analysis of the transcriptome across distant species
Authors: Mark Gerstein, Joel Rozowsky, Koon‐Kiu Yan, Daifeng Wang, Chao Cheng, James B. Brown, Carrie Davis, LaDeana Hillier, Cristina Sisu, Jingyi Jessica Li, Baikang Pei, Arif Harmanci, Michael O. Duff, Sarah Djebali, Roger P. Alexander, B. Alver, Raymond K. Auerbach, Kimberly Bell, Peter J. Bickel, Max E. Boeck, Nathan P. Boley, Benjamin W. Booth, Lucy Cherbas, Peter Cherbas, Chao Di, Alexander Dobin, Jörg Drenkow, Brent Ewing, Gang Fang, Megan Fastuca, Elise A. Feingold, Adam Frankish, Guanjun Gao, Peter J. Good, Roderic Guigó, Ann S. Hammonds, Jennifer Harrow, Roger A. Hoskins, Cédric Howald, Long Hu, Haiyan Huang, Tim Hubbard, Chau Huynh, Sonali Jha, Dionna M. Kasper, Masaomi Kato, Thomas C. Kaufman, Robert R. Kitchen, Erik Ladewig, Julien Lagarde, Eric C. Lai, Jing Leng, Zhi John Lu, Michael J. MacCoss, Gemma E. May, Rebecca McWhirter, Gennifer E. Merrihew, David M. Miller, A Mortazavi, Rabi Murad, Brian Oliver, Sara Olson, Peter J. Park, Michael J. Pazin, Norbert Perrimon, Dmitri D. Pervouchine, V Reinke, Alexandre Reymond, Garrett Robinson, Anastasia Samsonova, Gary Saunders, Felix Schlesinger, Anurag Sethi, Frank J. Slack, William C. Spencer, Marcus H. Stoiber, Pnina Strasbourger, Andrea Tanzer, Owen Thompson, Kenneth H. Wan, Guilin Wang, Huaien Wang, Kathie L. Watkins, Jiayu Wen, Kejia Wen, Chenghai Xue, Li Yang, Kevin Y. Yip, Chris Zaleski, Yan Zhang, Henry Zheng, Steven E. Brenner, Brenton R. Graveley, S Celniker, T Gingeras, R Waterston - Nature 2014 cited by 322
- A toolbox for class I HDACs reveals isoform specific roles in gene regulation and protein acetylation
Authors: Lena Hess, Verena Moos, Arnel A. Lauber, Wolfgang Reiter, Michael Schuster, Natascha Hartl, Daniel H. Lackner, Thorina Boenke, Anna Koren, Paloma M. Guzzardo, Brigitte Gundacker, Anna Riegler, Petra Vician, Claudia Miccolo, Susanna Leiter, Mahesh B. Chandrasekharan, Terezia Vcelkova, Andrea Tanzer, Jun Qi Jun, James E. Bradner, Gerald Brosch, Markus Hartl, Christoph Bock, Tilmann Bürckstümmer, Stefan Kubicek, Susanna Chiocca, Srividya Bhaskara, Christian Seiser - PLoS Genetics 2022 cited by 38
- Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution
Authors: Vitaly Sedlyarov, Jörg Fallmann, Florian Ebner, Jakob Huemer, Lucy Sneezum, Maša Ivin, Kristina Kreiner, Andrea Tanzer, Claus Vogl, Ivo L. Hofacker, Pavel Kovarik - Molecular Systems Biology 2016 cited by 89
- The expansion of the metazoan microRNA repertoire
Authors: Jana Hertel, Manuela Lindemeyer, Kristin Missal, Claudia Fried, Andrea Tanzer, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler, The Students of Bioinformatics Computer Labs 2004 and - BMC Genomics 2006 cited by 363
- Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs
Authors: Jules Deforges, Rodrigo S. Reis, Philippe Jacquet, Shaoline Sheppard, Veerendra P. Gadekar, Gene Hart‐Smith, Andrea Tanzer, Ivo L. Hofacker, Christian Iseli, Ioannis Xénarios, Yves Poirier - PLANT PHYSIOLOGY 2019 cited by 62
- 2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction
Authors: Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler - IEEE/ACM Transactions on Computational Biology and Bioinformatics, IEEE ACM Trans. Comput. Biol. Bioinform. 2013 cited by 48
- Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library
Authors: Hugo Y. K. Lam, Xinmeng Jasmine Mu, Adrian M. Stütz, Andrea Tanzer, Philip Cayting, M Snyder, Philip M. Kim, Jan O. Korbel, Mark Gerstein - Nature Biotechnology 2009 cited by 197
- Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression
Authors: Dmitri D. Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie Davis, Pablo Prieto Barja, Alexander Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei Hoon See, Meagan Fastuca, Jörg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, M Beer, Cédric Notredame, Roderic Guigó, T Gingeras - Nature Communications 2015 cited by 92
- Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq)
Authors: Julien Lagarde, Barbara Uszczyńska-Ratajczak, Javier Santoyo‐López, José M. González, Electra Tapanari, Jonathan M. Mudge, Charles A. Steward, Laurens Wilming, Andrea Tanzer, Cédric Howald, Jacqueline Chrast, Alicia Vela‐Boza, Antonio Rueda, Francisco J. López-Domingo, Joaquı́n Dopazo, Alexandre Reymond, Roderic Guigó, Jennifer Harrow - Nature Communications 2016 cited by 88
- The GENCODE CLS project: massively expanding the lncRNA catalog through capture long-read RNA sequencing
Authors: Tamara Perteghella, Gazaldeep Kaur, Sílvia Carbonell Sala, José M. González, Toby Hunt, Tomasz Mądry, Irwin Jungreis, Fabien Degalez, Carme Arnan, Ramil Nurtdinov, Julien Lagarde, Beatrice Borsari, Cristina Sisu, Yunzhe Jiang, Ruth Bennett, Andrew Berry, Marta Blangiewicz, Daniel Cerdán-Vélez, Kelly Cochran, Covadonga Vara, Claire Davidson, Sarah Donaldson, Cagatay Dursun, Silvia González-López, Sasti Gopal Das, Kathryn Lawrence, Daniel Nachun, Matthew P. Hardy, Zoe Hollis, Mike Kay, José Carlos Montañés, Pengyu Ni, Emilio Palumbo, Carlos Pulido-Quetglas, Marie‐Marthe Suner, X. Yu, Dingyao Zhang, François Aguet, Kristin Ardlie, Stephen B. Montgomery, Jane Loveland, M. Mar Albà, Mark Diekhans, Andrea Tanzer, Jonathan M. Mudge, Paul Flicek, Fergal J. Martin, Mark Gerstein, M. Kellis, Anshul Kundaje, Benedict Paten, Michael L. Tress, Rory Johnson, Barbara Uszczyńska-Ratajczak, Adam Frankish, Roderic Guigó - 2024 cited by 25
- Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals
Authors: Vincent J. Lynch, Andrea Tanzer, Yajun Wang, Frederick C. Leung, Birgit Gellersen, Deena Emera, Günter P. Wagner - National Academy of Sciences, Proceedings of the National Academy of Sciences 2008 cited by 102
- Evolution of microRNAs located within Hox gene clusters
Authors: Andrea Tanzer, Chris T. Amemiya, Chang‐Bae Kim, Peter F. Stadler - Journal of Experimental Zoology Part B Molecular and Developmental Evolution 2005 cited by 153
- Evolutionary patterns of non-coding RNAs
Authors: Athanasius F. Bompfünewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L. Hofacker, Jörg Lehmann, Kristin Missal, Axel Mosig, Bettina Müller, Sonja J. Prohaska, Bärbel M. R. Stadler, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, Christina Witwer - Theory in Biosciences, Theory Biosci. 2005 cited by 74
