Julien Lagarde
Active 2004–2025
- 77
- Papers
- 30,972
- Citations
- 39
- h-index
- 60
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology73.7%
- Medicine11.6%
- Neuroscience4.9%
- Immunology and Microbiology2.2%
- Agricultural and Biological Sciences2.2%
- Psychology2%
- Other3.4%
Topics
- Cancer-related molecular mechanisms research12.3%
- RNA modifications and cancer9.3%
- RNA Research and Splicing8.1%
- Genomics and Chromatin Dynamics4%
- RNA and protein synthesis mechanisms3.9%
- Circular RNAs in diseases3.3%
- Other59.1%
Coauthors
- Marie Sarazin20
- Michel Bottlaender18
- Roderic Guigó12
- Benoît G. Bardy9
- Sílvia Carbonell Sala9
- Adam Frankish8
- José M. González8
- Jennifer Harrow7
- T Gingeras7
- Carrie Davis6
- Jacqueline Chrast6
- Jonathan M. Mudge6
- Jörg Drenkow6
- Marie‐Claude Potier6
- Mark Diekhans6
- Philippe Gervais6
- Sarah Djebali6
- Sofiane Ramdani6
- Toby Hunt6
- Alexander Dobin5
- Alexander Taurone5
- Alexandre Reymond5
- Andrea Tanzer5
- Ani Eloyan5
All papers
- GENCODE reference annotation for the human and mouse genomes
Authors: Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Silvia Carbonell Sala, Jacqueline Chrast, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Toby Hunt, Osagie G. Izuogu, Julien Lagarde, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Jinrui Xu, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Bronwen L. Aken, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond, Michael L. Tress, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 3,502
- GENCODE 2021
Authors: Adam Frankish, Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Kevin L. Howe, Toby Hunt, Osagie G. Izuogu, Rory Johnson, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Ferriol Calvet Riera, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu, Yucheng T. Yang, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2020 cited by 1,466
- Landscape of transcription in human cells
Authors: Sarah Djebali, Carrie Davis, Angelika Merkel, Alexander Dobin, Timo Lassmann, A Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger, Chenghai Xue, Georgi K. Marinov, Jainab Khatun, Brian A. Williams, Chris Zaleski, Joel Rozowsky, Maik Röder, Felix Kokocinski, Rehab Abdelhamid, Tyler Alioto, Igor Antoshechkin, Michael T. Baer, Nadav Bar, Philippe Batut, Kimberly Bell, Ian Bell, Sudipto K. Chakrabortty, Xian Chen, Jacqueline Chrast, João Curado, Thomas Derrien, Jörg Drenkow, Erica Dumais, Jacqueline Dumais, Radha Duttagupta, Emilie Falconnet, Meagan Fastuca, Kata Fejes-Toth, Pedro G. Ferreira, Sylvain Foissac, Melissa J. Fullwood, Hui Gao, David González, Assaf Gordon, Harsha P. Gunawardena, Cédric Howald, Sonali Jha, Rory Johnson, Philipp Kapranov, Brandon King, Colin Kingswood, Oscar Junhong Luo, Eddie Park, Kimberly Persaud, Jonathan Preall, Paolo Ribeca, Brian A. Risk, Daniel Robyr, Michael Sammeth, Lorian Schaffer, Lei-Hoon See, Atif Shahab, Jørgen Skancke, Ana Maria Suzuki, Hazuki Takahashi, Hagen Tilgner, Diane Trout, Nathalie Walters, Huaien Wang, John A. Wrobel, Yanbao Yu, Xiaoan Ruan, Yoshihide Hayashizaki, Jennifer Harrow, Mark Gerstein, Tim Hubbard, Alexandre Reymond, Stylianos E. Antonarakis, Gregory J. Hannon, Morgan C. Giddings, Yijun Ruan, B Wold, Piero Carninci, Roderic Guigó, T Gingeras - Nature 2012 cited by 5,413
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Authors: Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Grégory Guernec, David Martı́n, Angelika Merkel, David G. Knowles, Julien Lagarde, Lavanya Veeravalli, Xiaoan Ruan, Yijun Ruan, Timo Lassmann, Piero Carninci, James Brown, Leonard Lipovich, José M. González, Mark Thomas, Carrie Davis, Ramin Shiekhattar, T Gingeras, Tim Hubbard, Cédric Notredame, Jennifer Harrow, Roderic Guigó - Genome Research 2012 cited by 5,217
- GENCODE: reference annotation for the human and mouse genomes in 2023
Authors: Adam Frankish, Silvia Carbonell Sala, Mark Diekhans, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Carme Arnan, If Barnes, Abhimanyu Banerjee, Ruth Bennett, Andrew E. Berry, Alexandra Bignell, Carles Boix, Ferriol Calvet Riera, Daniel Cerdán-Vélez, Fiona Cunningham, Claire Davidson, Sarah M. Donaldson, Cagatay Dursun, Reham Fatima, Stefano Giorgetti, Carlos García-Girón, Jose M. Gonzalez, Matthew Hardy, Peter W. Harrison, Thibaut Hourlier, Zoe Hollis, Toby Hunt, Benjamin James, Yunzhe Jiang, Rory Johnson, Mike P. Kay, Julien Lagarde, Fergal J. Martin, Laura Martínez Gómez, Surag Nair, Pengyu Ni, Fernando Pozo, Vivek Ramalingam, Magali Ruffier, Bianca M. Schmitt, Jacob M. Schreiber, Emily Steed, Marie-Marthe Suner, Dulika Sumathipala, Irina Sycheva, Barbara Uszczynska-Ratajczak, Elizabeth Wass, Yucheng T. Yang, Andrew D. Yates, Zahoor Zafrulla, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Anshul Kundaje, Benedict Paten, Michael L. Tress, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 648
- A comparative encyclopedia of DNA elements in the mouse genome
Authors: Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Wei-Sheng Wu, Tyrone Ryba, Richard Sandstrom, Zhihai Ma, Carrie Davis, Benjamin D. Pope, Yin Shen, Dmitri D. Pervouchine, Sarah Djebali, Robert E. Thurman, Rajinder Kaul, Eric Rynes, Anthony Kirilusha, Georgi K. Marinov, Brian A. Williams, Diane Trout, Henry Amrhein, Katherine Fisher-Aylor, Igor Antoshechkin, Gilberto DeSalvo, Lei-Hoon See, Meagan Fastuca, Jörg Drenkow, Chris Zaleski, Alexander Dobin, Pablo Prieto, Julien Lagarde, Giovanni Bussotti, Andrea Tanzer, Olgert Denas, Kanwei Li, M. A. Bender, Miaohua Zhang, Rachel Byron, Mark Groudine, David McCleary, Long Pham, Zhen Ye, Samantha Kuan, Lee Edsall, Yi-Chieh Wu, Matthew D. Rasmussen, Mukul S. Bansal, Manolis Kellis, Cheryl A. Keller, Christapher S. Morrissey, Tejaswini Mishra, Deepti Jain, Nergiz Doğan, Robert S. Harris, Philip Cayting, Trupti Kawli, Alan P. Boyle, Ghia Euskirchen, Anshul Kundaje, Shin Lin, Yiing Lin, Camden Jansen, Venkat S. Malladi, Melissa Cline, Drew T. Erickson, Vanessa M. Kirkup, Katrina Learned, Cricket A. Sloan, Kate R. Rosenbloom, Beatriz Lacerda de Sousa, Kathryn Beal, Miguel Pignatelli, Paul Flicek, Jin Lian, Tamer Kahveci, Dongwon Lee, W. James Kent, Miguel Ramalho Santos, Javier Herrero, Cédric Notredame, Audra Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio Neri, Morgan Diegel, Theresa K. Canfield, Peter J. Sabo, Matthew S. Wilken, Thomas A. Reh, Erika Giste, Anthony Shafer, Tanya Kutyavin, Eric Haugen, Douglas Dunn, Alex Reynolds, Shane Neph, Richard Humbert, R. Scott Hansen, Marella de Bruijn and 37 more - Nature 2014 cited by 1,949
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Authors: Fabio Pardi, Damian Keefe, Benedict Paten, Tim Massingham, Simon Whelan, Abel Ureta‐Vidal, Ari Löytynoja, Paul Flicek, Ewan Birney, Simon Whelan, Ewan Birney, Nick Goldman, Robert E. Thurman, Fidencio Neri, Shane Neph, Kirsten Lee, Jeff Goldy, Anthony Shafer, Michael O. Dorschner, Molly Weaver, Richard Sandstrom, J Stamatoyannopoulos, Andrew Haydock, Richard Sandstrom, William Stafford Noble, J Stamatoyannopoulos, Nathan Day, Richard Humbert, J Stamatoyannopoulos, Peter J. Sabo, Anindya Dutta, Ankit Malhotra, Neerja Karnani, Christopher M. Taylor, Roderic Guigó, Anindya Dutta, Patrick J. Boyle, Man Yu, Tyler Alioto, Josep F. Abril, Roderic Guigó, Eduardo Eyras, Núria López-Bigas, Philipp Kapranov, Josep F. Abril, Robert Castelo, Julien Lagarde, Jorg Drenkow, Eduardo Eyras, Srinka Ghosh, Evelyn J. Cheung, David A. Nix, Philipp Kapranov, Madhavan Ganesh, Ian Bell, Jill Cheng, Sylvain Foissac, Eric D. Green, Hari Tammana, Jörg Drenkow, T Gingeras, Valerie V.B. Maduro, Sujit Dike, T Gingeras, Yutao Fu, Ulaş Karaöz, Francis S. Collins, Valerie V. Maduro, Elliott H. Margulies, Eric D. Green, Hennady P. Shulha, Elliott H. Margulies, Jacquelyn R. Idol, Michael Snyder, Anason Halees, Xiaoling Zhang, Mousheng Xu, Ulaş Karaöz, Alexander E. Urban, Yutao Fu, Joel Rozowsky, Hennady P. Shulha, Yong Yu, Jaafar N. Haidar, Mark Gerstein, Jane M. Lin, Ghia Euskirchen, Jiaqian Wu, Ugrappa Nagalakshmi, M Snyder, Stephen E. Hartman, Peter R. Kraus, Pawandeep Dhami, Alexander E. Urban, Deyou Zheng, Joel Rozowsky, David Vetrie, Zhengdong D. Zhang, Ian Dunham, Michael Seringhaus and 212 more - Nature 2007 cited by 5,283
- Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Authors: Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley M. Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Alyssa Cousineau, Namrita Dhillon, José M. Fernández, Luis Ferrández-Peral, Natàlia Garcia-Reyero, Stefan Götz, Carles Hernandéz-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre‐Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Xingjie Ren, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, René Maehr, Yin Shen, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks, Angela N. Brooks, Angela N. Brooks - Nature Methods 2024 cited by 208
- Early and protective microglial activation in Alzheimer’s disease: a prospective study using18F-DPA-714 PET imaging
Authors: Lorraine Hamelin, Julien Lagarde, Guillaume Dorothée, Claire Leroy, M. Labit, Robert A. Comley, Leonardo Cruz de Souza, Hélène Corne, Luce Dauphinot, Maxime Bertoux, Bruno Dubois, Philippe Gervais, Olivier Colliot, Marie‐Claude Potier, Michel Bottlaender, Marie Sarazin - Brain 2016 cited by 525
- Towards a complete map of the human long non-coding RNA transcriptome
Authors: Barbara Uszczyńska-Ratajczak, Julien Lagarde, Adam Frankish, Roderic Guigó, Rory Johnson - Nature Reviews Genetics 2018 cited by 650
- Distinct dynamic profiles of microglial activation are associated with progression of Alzheimer's disease
Authors: Lorraine Hamelin, Julien Lagarde, Guillaume Dorothée, Marie Claude Potier, Fabian Corlier, Bertrand Kühnast, Fabien Caillé, Bruno Dubois, Ludovic Fillon, Marie Chupin, Michel Bottlaender, Marie Sarazin - Brain 2018 cited by 175
- Neutrophil hyperactivation correlates with Alzheimer's disease progression
Authors: Yuan Dong, Julien Lagarde, Laura Xicota, Hélène Corne, Yannick Chantran, Thomas Chaigneau, Bruno Crestani, Michel Bottlaender, Marie‐Claude Potier, Pièrre Aucouturier, Guillaume Dorothée, Marie Sarazin, Carole Elbim - Annals of Neurology 2018 cited by 184
- Current challenges and best practices for cell-free long RNA biomarker discovery
Authors: Lluc Cabús, Julien Lagarde, João Curado, Esther Lizano, Jennifer Pérez‐Boza - Biomarker Research 2022 cited by 87
- The phi complex as a neuromarker of human social coordination
Authors: Emmanuelle Tognoli, Julien Lagarde, G. C. deGuzman, J. A. Scott Kelso - National Academy of Sciences, Proceedings of the National Academy of Sciences 2007 cited by 436
- GENCODE: producing a reference annotation for ENCODE
Authors: Jennifer Harrow, France Denœud, Adam Frankish, Alexandre Reymond, Chao-Kung Chen, Jacqueline Chrast, Julien Lagarde, James Gilbert, Roy Storey, David Swarbreck, Colette Rossier, Catherine Ucla, Tim Hubbard, Stylianos E. Antonarakis, Roderic Guigó - Genome biology 2006 cited by 649
- Increased microglial activation in patients with Parkinson disease using [18F]-DPA714 TSPO PET imaging
Authors: Sonia Lavisse, Sébastien Goutal, Catriona Wimberley, Mattéo Tonietto, Michel Bottlaender, Philippe Gervais, Bertrand Kühnast, Marie‐Anne Peyronneau, Olivier Barret, Julien Lagarde, Marie Sarazin, Philippe Hantraye, Claire Thiriez, Philippe Rémy - Parkinsonism & Related Disorders 2020 cited by 132
- High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing
Authors: Julien Lagarde, Barbara Uszczyńska-Ratajczak, Silvia Carbonell‐Morote, Sílvia Pérez-Lluch, Amaya Abad, Carrie Davis, T Gingeras, Adam Frankish, Jennifer Harrow, Roderic Guigó, Rory Johnson - Nature Genetics 2017 cited by 292
- Tau-PET imaging predicts cognitive decline and brain atrophy progression in early Alzheimer’s disease
Authors: Julien Lagarde, Pauline Olivieri, Mattéo Tonietto, Cécile Tissot, Isabelle Rivals, Philippe Gervais, Fabien Caillé, Martin Moussion, Michel Bottlaender, Marie Sarazin - Journal of Neurology Neurosurgery & Psychiatry 2022 cited by 62
- Social coordination dynamics: Measuring human bonding
Authors: Olivier Oullier, Gonzalo C. de Guzman, Kelly J. Jantzen, Julien Lagarde, J. A. Scott Kelso - Social Neuroscience 2008 cited by 397
- Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Authors: Francisco J. Pardo-Palacios, Fairlie Reese, Sílvia Carbonell Sala, Mark Diekhans, Cindy Liang, Dingjie Wang, Brian A. Williams, Matthew S. Adams, Amit K. Behera, Julien Lagarde, Haoran Li, Andrey D. Prjibelski, Gabriela Balderrama-Gutierrez, Muhammed Hasan Çelik, Maite De María, Nancy D. Denslow, Natàlia García‐Reyero, Stefan Goetz, Margaret E. Hunter, Jane Loveland, Carlos Menor, David Moraga, Jonathan M. Mudge, Hazuki Takahashi, Alison D. Tang, Ingrid Youngworth, Piero Carninci, Roderic Guigó, Hagen Tilgner, B Wold, Christopher Vollmers, Gloria Sheynkman, Adam Frankish, Kin Fai Au, Ana Conesa, A Mortazavi, Angela N. Brooks - 2021 cited by 54
- RATTLE: reference-free reconstruction and quantification of transcriptomes from Nanopore sequencing
Authors: Ivan de la Rubia, Akanksha Srivastava, Wenjing Xue, Joel A. Indi, Sílvia Carbonell Sala, Julien Lagarde, M. Mar Albà, Eduardo Eyras - Genome biology 2022 cited by 53
- Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Authors: Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley Brooks, Ashley Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Namrita Dhillon, Jose M. Fernandez-Gonzalez, Luis Ferrández-Peral, Natàlia García‐Reyero, Stefan Goetz, Carles Hernandéz-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre‐Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks, Angela N. Brooks - 2023 cited by 28
- CapTrap-seq: a platform-agnostic and quantitative approach for high-fidelity full-length RNA sequencing
Authors: Sílvia Carbonell Sala, Tamara Perteghella, Julien Lagarde, Hiromi Nishiyori, Emilio Palumbo, Carme Arnan, Hazuki Takahashi, Piero Carninci, Barbara Uszczyńska-Ratajczak, Roderic Guigó - Nature Communications 2024 cited by 25
- On the use of sample entropy to analyze human postural sway data
Authors: Sofiane Ramdani, Benoît Seigle, Julien Lagarde, Frédéric Bouchara, Pierre Louis Bernard - Medical Engineering & Physics 2009 cited by 291
