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Cédric Notredame

Active 1996–2025

89
Papers
31,076
Citations
52
h-index
73
i10-index

Citations

Citations per year for Cédric Notredame1955: 1 citations1988: 1 citations1993: 1 citations1994: 1 citations1996: 6 citations1997: 6 citations1998: 5 citations1999: 18 citations2000: 22 citations2001: 29 citations2002: 72 citations2003: 118 citations2004: 186 citations2005: 246 citations2006: 247 citations2007: 243 citations2008: 247 citations2009: 214 citations2010: 230 citations2011: 292 citations2012: 250 citations2013: 422 citations2014: 461 citations2015: 508 citations2016: 484 citations2017: 484 citations2018: 477 citations2019: 1,094 citations2020: 1,048 citations2021: 987 citations2022: 687 citations2023: 467 citations2024: 750 citations2025: 422 citations2026: 48 citations1956–1987: no citations, so these years are not shown1989–1992: no citations, so these years are not shown1995: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,711 citing papers, 23.4% of this breakdownChina: 1,690 citing papers, 10.7% of this breakdownUnited Kingdom: 1,225 citing papers, 7.7% of this breakdownGermany: 1,112 citing papers, 7% of this breakdownFrance: 679 citing papers, 4.3% of this breakdownSpain: 672 citing papers, 4.2% of this breakdownCanada: 507 citing papers, 3.2% of this breakdownAustralia: 480 citing papers, 3% of this breakdownItaly: 446 citing papers, 2.8% of this breakdownSwitzerland: 385 citing papers, 2.4% of this breakdownJapan: 341 citing papers, 2.2% of this breakdownSweden: 303 citing papers, 1.9% of this breakdown
0%23.4%Other 27.2%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology68.8%
  • Medicine8.9%
  • Agricultural and Biological Sciences5.7%
  • Computer Science4.3%
  • Immunology and Microbiology3%
  • Decision Sciences2.2%
  • Other7.1%

Topics

  • Cancer-related molecular mechanisms research8.5%
  • Genomics and Phylogenetic Studies7.4%
  • RNA modifications and cancer5.6%
  • RNA Research and Splicing4.8%
  • RNA and protein synthesis mechanisms3.4%
  • Circular RNAs in diseases2%
  • Other68.3%

Coauthors

All papers

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  1. Nextflow enables reproducible computational workflows

    Authors: Paolo Di Tommaso, Maria Chatzou, Evan Floden, Pablo Prieto Barja, Emilio Palumbo, Cédric Notredame - Nature Biotechnology 2017 cited by 4,243

  2. The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

    Authors: Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Grégory Guernec, David Martı́n, Angelika Merkel, David G. Knowles, Julien Lagarde, Lavanya Veeravalli, Xiaoan Ruan, Yijun Ruan, Timo Lassmann, Piero Carninci, James Brown, Leonard Lipovich, José M. González, Mark Thomas, Carrie Davis, Ramin Shiekhattar, T Gingeras, Tim Hubbard, Cédric Notredame, Jennifer Harrow, Roderic Guigó - Genome Research 2012 cited by 5,217

  3. T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton

    Authors: Cédric Notredame, Desmond G. Higgins, Jaap Heringa - Journal of Molecular Biology 2000 cited by 7,058

  4. A comparative encyclopedia of DNA elements in the mouse genome

    Authors: Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Wei-Sheng Wu, Tyrone Ryba, Richard Sandstrom, Zhihai Ma, Carrie Davis, Benjamin D. Pope, Yin Shen, Dmitri D. Pervouchine, Sarah Djebali, Robert E. Thurman, Rajinder Kaul, Eric Rynes, Anthony Kirilusha, Georgi K. Marinov, Brian A. Williams, Diane Trout, Henry Amrhein, Katherine Fisher-Aylor, Igor Antoshechkin, Gilberto DeSalvo, Lei-Hoon See, Meagan Fastuca, Jörg Drenkow, Chris Zaleski, Alexander Dobin, Pablo Prieto, Julien Lagarde, Giovanni Bussotti, Andrea Tanzer, Olgert Denas, Kanwei Li, M. A. Bender, Miaohua Zhang, Rachel Byron, Mark Groudine, David McCleary, Long Pham, Zhen Ye, Samantha Kuan, Lee Edsall, Yi-Chieh Wu, Matthew D. Rasmussen, Mukul S. Bansal, Manolis Kellis, Cheryl A. Keller, Christapher S. Morrissey, Tejaswini Mishra, Deepti Jain, Nergiz Doğan, Robert S. Harris, Philip Cayting, Trupti Kawli, Alan P. Boyle, Ghia Euskirchen, Anshul Kundaje, Shin Lin, Yiing Lin, Camden Jansen, Venkat S. Malladi, Melissa Cline, Drew T. Erickson, Vanessa M. Kirkup, Katrina Learned, Cricket A. Sloan, Kate R. Rosenbloom, Beatriz Lacerda de Sousa, Kathryn Beal, Miguel Pignatelli, Paul Flicek, Jin Lian, Tamer Kahveci, Dongwon Lee, W. James Kent, Miguel Ramalho Santos, Javier Herrero, Cédric Notredame, Audra Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio Neri, Morgan Diegel, Theresa K. Canfield, Peter J. Sabo, Matthew S. Wilken, Thomas A. Reh, Erika Giste, Anthony Shafer, Tanya Kutyavin, Eric Haugen, Douglas Dunn, Alex Reynolds, Shane Neph, Richard Humbert, R. Scott Hansen, Marella de Bruijn and 37 more - Nature 2014 cited by 1,949

  5. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

    Authors: Paolo Di Tommaso, Sébastien Moretti, Ioannis Xenarios, Miquel Orobitg, Alberto Montanyola, Jia-Ming Chang, Jean-François Taly, Cédric Notredame - Nucleic Acids Research, Nucleic Acids Res. 2011 cited by 1,230

  6. Multiple sequence alignment modeling: methods and applications

    Authors: Maria Chatzou, Cedrik Magis, Jia-Ming Chang, Carsten Kemena, Giovanni Bussotti, Ionas Erb, Cédric Notredame - Briefings in Bioinformatics, Briefings Bioinform. 2015 cited by 245

  7. Long Noncoding RNAs with Enhancer-like Function in Human Cells

    Authors: Ulf Andersson Ørom, Thomas Derrien, Malte Beringer, Kiranmai Gumireddy, Alessandro Gardini, Giovanni Bussotti, Fan Lai, Matthias Zytnicki, Cédric Notredame, Qihong Huang, Roderic Guigò, Ramin Shiekhattar - Cell 2010 cited by 1,768

  8. Epistasis as the primary factor in molecular evolution

    Authors: Michael S. Breen, Carsten Kemena, Peter K. Vlasov, Cédric Notredame, Fyodor A. Kondrashov - Nature, Nat. 2012 cited by 400

  9. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

    Authors: Leif Andersson, Alan Archibald, C. D. K. Bottema, Rüdiger Bräuning, Shane C. Burgess, Dave W Burt, Eduardo Casas, Hans H. Cheng, Laura Clarke, Christine Couldrey, Brian P. Dalrymple, Christine G. Elsik, Sylvain Foissac, Elisabetta Giuffra, Martien A. M. Groenen, Ben J. Hayes, LuSheng S Huang, Hassan Khatib, James Kijas, Heebal Kim, Joan K. Lunney, Fiona McCarthy, John C. McEwan, S. S. Moore, Bindu Nanduri, Cédric Notredame, Yniv Palti, Graham Plastow, James M. Reecy, G. A. Rohrer, Elena Sarropoulou, Carl J. Schmidt, Jeffrey T. Silverstein, Ross L. Tellam, Michèle Tixier-Boichard, Gwenola Tosser‐Klopp, Christopher K. Tuggle, Johanna Vilkki, Stephen N. White, Shuhong Zhao, Huaijun Zhou - Genome Biology 2015 cited by 402

  10. CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis

    Authors: Samir Ounzain, Rudi Micheletti, Carme Arnan, Isabelle Plaisance, Dario Cecchi, Blanche Schroen, Ferrán Reverter, Michael Alexanian, Christine R. Gonzales, Shi‐Yan Ng, Giovanni Bussotti, Iole Pezzuto, Cédric Notredame, Stéphane Heymans, Roderic Guigó, Rory Johnson, Thierry Pedrazzini - Journal of Molecular and Cellular Cardiology 2015 cited by 292

  11. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

    Authors: Federico Abascal, André Corvelo, Fernando Cruz, José Luis Villanueva‐Cañas, Anna Vlasova, Marina Marcet‐Houben, Begoña Martínez‐Cruz, Jade Yu Cheng, Pablo Prieto, Vı́ctor Quesada, Javier Quilez, Gang Li, F. García, Miriam Rubio-Camarillo, Leonor Frías, Paolo Ribeca, Salvador Capella-Gutiérrez, J. M. Rodríguez, Francisco Câmara Ferreira, Ernesto Lowy, Luca Cozzuto, Ionas Erb, Michael L. Tress, Jose L. Rodriguez-Ales, Jorge Ruiz‐Orera, Ferrán Reverter, Mireia Casas‐Marce, Laura García-España Soriano, Javier R. Arango, Sophia Derdak, Beatriz Galán, Julie Blanc, Marta Gut, Belén Lorente-Galdós, Marta Andrés-Nieto, Carlos López-Otı́n, Alfonso Valencia, Marta Gut, José L. Garcı́a, Roderic Guigó, William J. Murphy, Aurora Ruiz‐Herrera, Tomàs Marquès‐Bonet, Guglielmo Roma, Cédric Notredame, Thomas Mailund, M. Mar Albà, Toni Gabaldón, Tyler Alioto, José A. Godoy - Genome biology 2016 cited by 228

  12. TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction

    Authors: Jia‐Ming Chang, Paolo Di Tommaso, Cédric Notredame - Molecular Biology and Evolution 2014 cited by 227

  13. AMPA: an automated web server for prediction of protein antimicrobial regions

    Authors: Marc Torrent, Paolo Di Tommaso, David Pulido, Victòria M. Nogués, Cédric Notredame, Ester Boix, David Andreu - Bioinformatics, Bioinform. 2011 cited by 171

  14. Empowering bioinformatics communities with Nextflow and nf-core

    Authors: Björn E. Langer, Andreia J. Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles, Praveen Chitneedi, Emily L. Clark, Paolo Di Tommaso, Sarah Djebali, Philip Ewels, Sonia E Eynard, James A. Fellows Yates, Daniel Fischer, Evan Floden, Sylvain Foissac, Gisela Gabernet, M. Garcia, Gareth Gillard, Manu Kumar Gundappa, Cervin Guyomar, Christopher Hakkaart, Friederike Hanssen, Peter W. Harrison, Matthias Hörtenhuber, Cyril Kurylo, Christa Kühn, Sandrine Lagarrigue, Delphine Lallias, Daniel J. Macqueen, E. Miller, Júlia Mir-Pedrol, Gabriel Costa Monteiro Moreira, Sven Nahnsen, Harshil Patel, Alexander Peltzer, Frédérique Pitel, Yuliaxis Ramayo‐Caldas, Marcel da Câmara Ribeiro-Dantas, Dominique Rocha, Mazdak Salavati, Alexey Sokolov, Jose Espinosa‐Carrasco, Cédric Notredame, the nf-core community. - 2024 cited by 25

  15. Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

    Authors: Fabrice Armougom, Sébastien Moretti, Olivier Poirot, Stéphane Audic, Pierre Dumas, Basile Schaeli, Vladimir Keduas, Cédric Notredame - Nucleic Acids Research, Nucleic Acids Res. 2006 cited by 520

  16. 1. Multichannel Sequence Analysis Applied to Social Science Data

    Authors: Jacques‐Antoine Gauthier, Éric Widmer, Philipp Bücher, Cédric Notredame - Sociological Methodology 2010 cited by 254

  17. Highly significant improvement of protein sequence alignments with AlphaFold2

    Authors: Athanasios Baltzis, Leila Mansouri, Suzanne Jin, Björn E. Langer, Ionas Erb, Cédric Notredame - Bioinformatics, Bioinform. 2022 cited by 42

  18. 3DCoffee: Combining Protein Sequences and Structures within Multiple Sequence Alignments

    Authors: Órla O’Sullivan, Karsten Suhre, Chantal Abergel, Desmond G. Higgins, Cédric Notredame - Journal of Molecular Biology 2004 cited by 322

  19. Upcoming challenges for multiple sequence alignment methods in the high-throughput era

    Authors: Carsten Kemena, Cédric Notredame - Bioinformatics, Bioinform. 2009 cited by 236

  20. Recent Evolutions of Multiple Sequence Alignment Algorithms

    Authors: Cédric Notredame - PLoS Computational Biology, PLoS Comput. Biol. 2007 cited by 222

  21. Alignathon: a competitive assessment of whole-genome alignment methods

    Authors: Dent Earl, Ngan Nguyen, Glenn Hickey, Robert S. Harris, Stephen Fitzgerald, Kathryn Beal, Igor Seledtsov, В. В. Молодцов, Brian J. Raney, Hiram Clawson, Jaebum Kim, Carsten Kemena, Jia‐Ming Chang, Ionas Erb, Alexander Poliakov, Minmei Hou, Javier Herrero, William Kent, Victor Solovyev, Aaron E. Darling, Jian Ma, Cédric Notredame, Michael Brudno, Inna Dubchak, David Haussler, Benedict Paten - Genome Research 2014 cited by 131

  22. Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani

    Authors: Pablo Prieto Barja, Pascale Pescher, Giovanni Bussotti, Franck Dumetz, Hideo Imamura, Darek Kedra, Malgorzata A. Domagalska, Victor Chaumeau, Heinz Himmelbauer, Michel Pagès, Yvon Sterkers, Jean‐Claude Dujardin, Cédric Notredame, Gérald F. Späth - Nature Ecology & Evolution 2017 cited by 130

  23. The iRMSD: a local measure of sequence alignment accuracy using structural information

    Authors: Fabrice Armougom, Sébastien Moretti, Vladimir Keduas, Cédric Notredame - Bioinformatics, ISMB (Supplement of Bioinformatics) 2006 cited by 53

  24. Large multiple sequence alignments with a root-to-leaf regressive method

    Authors: Edgar Garriga Nogales, Paolo Di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Hafid Laayouni, Fyodor A. Kondrashov, Evan Floden, Cédric Notredame - Nature Biotechnology 2019 cited by 37