Yijun Ruan

Active 1995–2025

112
Papers
45,464
Citations
77
h-index
106
i10-index

Citations

Citations per year for Yijun Ruan1967: 2 citations1986: 1 citations1988: 2 citations1989: 2 citations1993: 3 citations1994: 3 citations1997: 3 citations1998: 1 citations1999: 13 citations2000: 18 citations2001: 14 citations2002: 18 citations2003: 27 citations2004: 56 citations2005: 57 citations2006: 109 citations2007: 218 citations2008: 325 citations2009: 461 citations2010: 518 citations2011: 606 citations2012: 693 citations2013: 886 citations2014: 982 citations2015: 943 citations2016: 898 citations2017: 809 citations2018: 817 citations2019: 1,839 citations2020: 1,765 citations2021: 1,606 citations2022: 1,140 citations2023: 807 citations2024: 1,085 citations2025: 474 citations2026: 23 citations1968–1985: no citations, so these years are not shown1987: no citations, so this year is not shown1990–1992: no citations, so these years are not shown1995–1996: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 6,269 citing papers, 27.5% of this breakdownChina: 3,671 citing papers, 16.1% of this breakdownUnited Kingdom: 1,488 citing papers, 6.5% of this breakdownGermany: 1,128 citing papers, 5% of this breakdownCanada: 712 citing papers, 3.1% of this breakdownFrance: 706 citing papers, 3.1% of this breakdownJapan: 653 citing papers, 2.9% of this breakdownAustralia: 645 citing papers, 2.8% of this breakdownItaly: 630 citing papers, 2.8% of this breakdownSpain: 600 citing papers, 2.6% of this breakdownNetherlands: 483 citing papers, 2.1% of this breakdownSingapore: 437 citing papers, 1.9% of this breakdown
0%27.5%Other 23.6%

Fields

  • Biochemistry, Genetics and Molecular Biology72.2%
  • Medicine13.3%
  • Agricultural and Biological Sciences5.5%
  • Environmental Science3%
  • Immunology and Microbiology3%
  • Neuroscience0.8%
  • Other2.2%

Topics

  • Cancer-related molecular mechanisms research7.6%
  • Genomics and Chromatin Dynamics7.6%
  • RNA Research and Splicing6.4%
  • RNA modifications and cancer6.1%
  • Epigenetics and DNA Methylation3.5%
  • Genomics and Phylogenetic Studies2.8%
  • Other66%

Coauthors

All papers

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  1. Landscape of transcription in human cells

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Thomas Derrien, Jörg Drenkow, Erica Dumais, Jacqueline Dumais, Radha Duttagupta, Emilie Falconnet, Meagan Fastuca, Kata Fejes-Toth, Pedro G. Ferreira, Sylvain Foissac, Melissa J. Fullwood, Hui Gao, David González, Assaf Gordon, Harsha P. Gunawardena, Cédric Howald, Sonali Jha, Rory Johnson, Philipp Kapranov, Brandon King, Colin Kingswood, Oscar Junhong Luo, Eddie Park, Kimberly Persaud, Jonathan Preall, Paolo Ribeca, Brian A. Risk, Daniel Robyr, Michael Sammeth, Lorian Schaffer, Lei-Hoon See, Atif Shahab, Jørgen Skancke, Ana Maria Suzuki, Hazuki Takahashi, Hagen Tilgner, Diane Trout, Nathalie Walters, Huaien Wang, John A. Wrobel, Yanbao Yu, Xiaoan Ruan, Yoshihide Hayashizaki, Jennifer Harrow, Mark Gerstein, Tim Hubbard, Alexandre Reymond, Stylianos E. Antonarakis, Gregory J. Hannon, Morgan C. Giddings, Yijun Ruan, B Wold, Piero Carninci, Roderic Guigó, T Gingeras - Nature 2012 cited by 5,413

  2. The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , - Genome Research 2012 cited by 5,217

  3. International network of cancer genome projects

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Joseph G. Vockley, Koichi Watanabe, Huanming Yang, M.M.F. Yuen, T. S. Rao, Martin Bobrow, Anne Cambon‐Thomsen, Lynn G. Dressler, Iris Pauporté, Yann Joly, Patrik Kolar, Jacques Remacle, Pilar Nicolás, Michael Parker, Emmanuelle Rial‐Sebbag, Carlos M. Romeo-Casabona, Laura Lyman Rodriguez, Susan Wallace, Georgia L. Wiesner, Nikolajs Zeps, Jun Kusuda, Tohru Masui, Christian Chabannon, Youyong Lu, Bruno Clément, Feng Chen, Françoise Degos, Xiaofang Xing, Peter Geary, D. Neil Hayes, Thomas J. Hudson, Amber L. Johns, Yasushi Totoki, Hidewaki Nakagawa, Michael R. Stratton, Miguel Á. Piris, Rajiv Sarin, Aldo Scarpa, Zemin Ning, Marc J. van de Vijver, P. Andrew Futreal, Hiroyuki Aburatani, Mónica Bayés, Sancha Martin, Koichi Watanabe, Xavier Estivill, Guangwu Guo, Sean M. Grimmond, Qibin Li, Martin Hirst, Honglong Wu, Shancen Zhao, Marco A. Marra, John D. McPherson, Hidewaki Nakagawa, Zemin Ning, Geng Tian, Yijun Ruan, Yann Joly, Susan Wallace, Bartha M. Knoppers, Harold Swerdlow, Victor E. Velculescu, Emmanuelle Rial-Sebbag, Lynn G. Dressler, Liu Yang, Pilar Nicolás, Gary D. Bader, Paul C. Boutros, Georgia L. Wiesner and 156 more - Nature 2010 cited by 2,428

  4. An oestrogen-receptor-α-bound human chromatin interactome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , R. Krishna Murthy Karuturi, Hervé Thoreau, Guillaume Bourque, Hendrik G. Stunnenberg, Xiaoan Ruan, Valère Cacheux-Rataboul, Wing‐Kin Sung, Edison T. Liu, Chia‐Lin Wei, Edwin Cheung, Yijun Ruan - Nature 2009 cited by 1,838

  5. The Energetics and Physiological Impact of Cohesin Extrusion

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , David Levens, Erez Lieberman Aiden, Rafael Casellas - Cell 2018 cited by 642

  6. CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription

    Authors: , , , , , , , , , , , , , , , , , , , , , , , - Cell 2015 cited by 1,137

  7. Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription

    Authors: , , , , , , , , , , , , , , , , , , - Cancer Cell 2021 cited by 289

  8. The draft genome of sweet orange (Citrus sinensis)

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Oscar Junhong Luo, Zhonghui Tang, Wen-Wu Guo, Hanhui Kuang, Hong Yu Zhang, Mikeal L. Roose, Niranjan Nagarajan, Xiuxin Deng, Yijun Ruan - Nature Genetics 2012 cited by 1,052

  9. RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses

    Authors: , , , , , , , , , - PLoS Biology 2005 cited by 828

  10. Evolutionarily Conserved Principles Predict 3D Chromatin Organization

    Authors: , , , , , , , , - Molecular Cell 2017 cited by 598

  11. Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells

    Authors: , , , , , , , , , , , , , , , , , , , , , , - Cell 2008 cited by 2,577

  12. Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , - Nature Genetics 2017 cited by 488

  13. Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Melissa J. Fullwood, Edwin Cheung, Edison Liu, Wing‐Kin Sung, M Snyder, Yijun Ruan - Cell 2012 cited by 1,345

  14. Multidimensional single-cell analysis of human peripheral blood reveals characteristic features of the immune system landscape in aging and frailty

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , - Nature Aging 2022 cited by 144

  15. A supervised learning framework for chromatin loop detection in genome-wide contact maps

    Authors: , , , , , , , - Nature Communications 2020 cited by 172

  16. Evolution of the mammalian transcription factor binding repertoire via transposable elements

    Authors: , , , , , , , , , , - Genome Research 2008 cited by 630

  17. Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Xiaokun Shu, Caterina Strambio‐De‐Castillia, Anastassiia Vertii, Huaiying Zhang, Sheng Zhong - Molecular Cell 2023 cited by 97

  18. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

    Authors: , , , , , , , , , , , , , , , , , , , , , , - Nature Genetics 2006 cited by 2,456

  19. Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations

    Authors: , , , , , , , , , , , , , , , - Nature 2013 cited by 505

  20. Super-enhancers delineate disease-associated regulatory nodes in T cells

    Authors: , , , , , , , , , , , , , , - Nature 2015 cited by 404

  21. Multiplex chromatin interactions with single-molecule precision

    Authors: , , , , , , , , , , , , , , , - Nature 2019 cited by 262

  22. Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application

    Authors: , , , , , , , - BMC Genomics 2014 cited by 127

  23. Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Chris Kinsinger, Scott D. Jewell, Daniel W. Chan, Hui Zhang, Aadel A. Chaudhuri, Milan G. Chheda, Benjamin D. Humphreys, Mehdi Mesri, Henry Rodriguez, James J. Hsieh, Li Ding, Feng Chen - Nature Communications 2023 cited by 49

  24. Functional metagenomic profiling of nine biomes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , - Nature 2008 cited by 982