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Nick Goldman

Active 1990–2026

94
Papers
38,447
Citations
65
h-index
86
i10-index

Citations

Citations per year for Nick Goldman1992: 5 citations1993: 6 citations1994: 27 citations1995: 35 citations1996: 39 citations1997: 46 citations1998: 81 citations1999: 50 citations2000: 127 citations2001: 180 citations2002: 182 citations2003: 439 citations2004: 547 citations2005: 559 citations2006: 446 citations2007: 491 citations2008: 594 citations2009: 527 citations2010: 513 citations2011: 526 citations2012: 524 citations2013: 502 citations2014: 521 citations2015: 525 citations2016: 423 citations2017: 376 citations2018: 387 citations2019: 820 citations2020: 784 citations2021: 717 citations2022: 593 citations2023: 450 citations2024: 576 citations2025: 295 citations2026: 34 citations

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 5,450 citing papers, 29% of this breakdownUnited Kingdom: 1,805 citing papers, 9.6% of this breakdownChina: 1,403 citing papers, 7.5% of this breakdownGermany: 1,183 citing papers, 6.3% of this breakdownCanada: 755 citing papers, 4% of this breakdownFrance: 728 citing papers, 3.9% of this breakdownAustralia: 677 citing papers, 3.6% of this breakdownJapan: 533 citing papers, 2.8% of this breakdownSpain: 507 citing papers, 2.7% of this breakdownSwitzerland: 433 citing papers, 2.3% of this breakdownItaly: 384 citing papers, 2% of this breakdownSweden: 378 citing papers, 2% of this breakdown
0%29%Other 24.3%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology67.4%
  • Agricultural and Biological Sciences9.9%
  • Medicine8.7%
  • Immunology and Microbiology3.3%
  • Environmental Science2.8%
  • Neuroscience1.7%
  • Other6.2%

Topics

  • Genomics and Phylogenetic Studies9.8%
  • RNA and protein synthesis mechanisms4.6%
  • Chromosomal and Genetic Variations3.7%
  • Genetic diversity and population structure3.5%
  • Genomics and Chromatin Dynamics3.2%
  • RNA modifications and cancer3%
  • Other72.2%

Coauthors

All papers

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  1. Towards practical, high-capacity, low-maintenance information storage in synthesized DNA

    Authors: Nick Goldman, Paul Bertone, Siyuan Chen, Christophe Dessimoz, Emily M. LeProust, Botond Sipos, Ewan Birney - Nature, Nat. 2013 cited by 1,240

  2. Initial sequencing and comparative analysis of the mouse genome

    Authors: Asif T. Chinwalla, R Waterston, Kerstin Lindblad‐Toh, Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, Joanne O. Nelson, Robert Baertsch, J. Bailey, K. F. Barlow, Stephan Beck, E. Berry, Bruce W. Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R. Brent, Daniel G. Brown, S.D.M. Brown, Carol J. Bult, John H. Burton, Jonathan A. Butler, R. Duncan Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif Chinwalla, Deanna M. Church, Michèle Clamp, Christopher Clee, Francis S. Collins, Lisa L. Cook, Richard R. Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, J. Davies, Kimberly D. Delehaunty, Justin Deri, Emmanouil T. Dermitzakis, Colin N. Dewey, Nicholas J. Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M. Dunn, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam L. Felsenfeld, Ginger Fewell, Paul Flicek, Karen Foley, Wayne N. Frankel, Lucinda A. Fulton, Robert S. Fulton, Terrence S. Furey, Diane Gage, Richard A. Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina Graves, Eric D. Green, Simon G. Gregory, Roderic Guigó, Mark S. Guyer, Ross C. Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W. Hillier, James Cuff, Wratko Hlavina, Timothy R. Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian J. Jackson, David B. Jaffe, L. Steven Johnson, Matthew C. Jones, Thomas A. Jones, Ann Joy, Michael Kamal and 123 more - Nature 2002 cited by 7,293

  3. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Authors: Fabio Pardi, Damian Keefe, Benedict Paten, Tim Massingham, Simon Whelan, Abel Ureta‐Vidal, Ari Löytynoja, Paul Flicek, Ewan Birney, Simon Whelan, Ewan Birney, Nick Goldman, Robert E. Thurman, Fidencio Neri, Shane Neph, Kirsten Lee, Jeff Goldy, Anthony Shafer, Michael O. Dorschner, Molly Weaver, Richard Sandstrom, J Stamatoyannopoulos, Andrew Haydock, Richard Sandstrom, William Stafford Noble, J Stamatoyannopoulos, Nathan Day, Richard Humbert, J Stamatoyannopoulos, Peter J. Sabo, Anindya Dutta, Ankit Malhotra, Neerja Karnani, Christopher M. Taylor, Roderic Guigó, Anindya Dutta, Patrick J. Boyle, Man Yu, Tyler Alioto, Josep F. Abril, Roderic Guigó, Eduardo Eyras, Núria López-Bigas, Philipp Kapranov, Josep F. Abril, Robert Castelo, Julien Lagarde, Jorg Drenkow, Eduardo Eyras, Srinka Ghosh, Evelyn J. Cheung, David A. Nix, Philipp Kapranov, Madhavan Ganesh, Ian Bell, Jill Cheng, Sylvain Foissac, Eric D. Green, Hari Tammana, Jörg Drenkow, T Gingeras, Valerie V.B. Maduro, Sujit Dike, T Gingeras, Yutao Fu, Ulaş Karaöz, Francis S. Collins, Valerie V. Maduro, Elliott H. Margulies, Eric D. Green, Hennady P. Shulha, Elliott H. Margulies, Jacquelyn R. Idol, Michael Snyder, Anason Halees, Xiaoling Zhang, Mousheng Xu, Ulaş Karaöz, Alexander E. Urban, Yutao Fu, Joel Rozowsky, Hennady P. Shulha, Yong Yu, Jaafar N. Haidar, Mark Gerstein, Jane M. Lin, Ghia Euskirchen, Jiaqian Wu, Ugrappa Nagalakshmi, M Snyder, Stephen E. Hartman, Peter R. Kraus, Pawandeep Dhami, Alexander E. Urban, Deyou Zheng, Joel Rozowsky, David Vetrie, Zhengdong D. Zhang, Ian Dunham, Michael Seringhaus and 212 more - Nature 2007 cited by 5,283

  4. A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach

    Authors: Simon Whelan, Nick Goldman - Molecular Biology and Evolution 2001 cited by 2,964

  5. A high-resolution map of human evolutionary constraint using 29 mammals

    Authors: Kerstin Lindblad‐Toh, Manuel Garber, Or Zuk, Michael F. Lin, Brian J. Parker, Stefan Washietl, Pouya Kheradpour, Jason Ernst, Gregory E. Jordan, Evan Mauceli, Lucas D. Ward, Craig B. Lowe, Alisha K. Holloway, Michèle Clamp, Sante Gnerre, Jessica Alföldi, Kathryn Beal, Jean L. Chang, Hiram Clawson, James Cuff, Federica Di Palma, Stephen Fitzgerald, Paul Flicek, Mitchell Guttman, Melissa J. Hubisz, David B. Jaffe, Irwin Jungreis, W. James Kent, Dennis Kostka, Marcia Lara, André L. Martins, Tim Massingham, Ida Moltke, Brian J. Raney, Matthew D. Rasmussen, Jim Robinson, Alexander Stark, Albert J. Vilella, Jiayu Wen, Xiaohui Xie, Michael C. Zody, Kim C. Worley, Christie Kovar, Donna M. Muzny, Richard A. Gibbs, Wesley C. Warren, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Ewan Birney, Elliott H. Margulies, Javier Herrero, Eric D. Green, David Haussler, Adam Siepel, Nick Goldman, Katherine S. Pollard, Jakob Skou Pedersen, Eric S. Lander, Manolis Kellis - Nature 2011 cited by 1,228

  6. Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design

    Authors: Lukas Weilguny, Nicola De Maio, Rory Munro, Charlotte Manser, Ewan Birney, Matthew Loose, Nick Goldman - Nature Biotechnology 2023 cited by 95

  7. A codon-based model of nucleotide substitution for protein-coding DNA sequences.

    Authors: Nick Goldman, Zefeng Yang - Molecular Biology and Evolution 1994 cited by 2,033

  8. Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference

    Authors: Ge Tan, Matthieu Muffato, Christian Ledergerber, Javier Herrero, Nick Goldman, Manuel Gil, Christophe Dessimoz - Systematic Biology 2015 cited by 272

  9. A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees

    Authors: Jakob McBroome, Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Nicola De Maio, Nick Goldman, David Haussler, Russell Corbett‐Detig, Yatish Turakhia - Molecular Biology and Evolution 2021 cited by 120

  10. Maximum likelihood pandemic-scale phylogenetics

    Authors: Nicola De Maio, Prabhav Kalaghatgi, Yatish Turakhia, Russell Corbett-Detig, Bùi Quang Minh, Nick Goldman - Nature Genetics 2023 cited by 68

  11. Systematic evaluation of spliced alignment programs for RNA-seq data

    Authors: Pär G. Engström, Tamara Steijger, Botond Sipos, Gregory R. Grant, André Kahles, Gunnar Rätsch, Nick Goldman, Tim Hubbard, Jennifer Harrow, Roderic Guigó, Paul Bertone - Nature Methods 2013 cited by 558

  12. Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

    Authors: Kate Schroder, Katharine M. Irvine, Martin S. Taylor, Nilesh J. Bokil, Kim‐Anh Lê Cao, Kelly‐Anne Masterman, Larisa I. Labzin, Colin A. Semple, Ronan Kapétanovic, Lynsey Fairbairn, Altuna Akalin, Geoffrey J. Faulkner, J. Kenneth Baillie, Milena Gongora, Carsten O. Daub, Hideya Kawaji, Geoffrey J. McLachlan, Nick Goldman, Sean M. Grimmond, Piero Carninci, Harukazu Suzuki, Yoshihide Hayashizaki, Boris Lenhard, David Hume, Matthew J. Sweet - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 cited by 314

  13. Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites

    Authors: Ziheng Yang, Rasmus Nielsen, Nick Goldman, Anne-Mette Krabbe Pedersen - Genetics 2000 cited by 2,369

  14. Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

    Authors: Ari Löytynoja, Nick Goldman - Science 2008 cited by 838

  15. An algorithm for progressive multiple alignment of sequences with insertions

    Authors: Ari Löytynoja, Nick Goldman - National Academy of Sciences, Proceedings of the National Academy of Sciences 2005 cited by 969

  16. Insights into hominid evolution from the gorilla genome sequence

    Authors: Aylwyn Scally, Julien Y. Dutheil, LaDeana W. Hillier, Gregory E. Jordan, Ian Goodhead, Javier Herrero, Asger Hobolth, Tuuli Lappalainen, Thomas Mailund, Tomàs Marquès‐Bonet, Shane McCarthy, Stephen H. Montgomery, Petra Schwalie, Amy Tang, Michelle C. Ward, Yali Xue, Bryndís Yngvadóttir, Can Alkan, Lars Nørvang Andersen, Qasim Ayub, Edward V. Ball, Kathryn Beal, Brenda J. Bradley, Yuan Chen, Chris M. Clee, Stephen Fitzgerald, Tina Graves, Yong Gu, P. D. Heath, Andreas Heger, Emre Karakoç, Anja Kolb‐Kokocinski, Gavin K. Laird, Gerton Lunter, Stephen Meader, Matthew Mort, James C. Mullikin, Kasper Munch, Timothy D. O’Connor, Andrew D. Phillips, Javier Prado-Martinez, Anthony S. Rogers, Saba Sajjadian, Dominic Schmidt, Katy Shaw, Jared T. Simpson, Peter D. Stenson, Daniel J. Turner, Linda Vigilant, Albert J. Vilella, Weldon Whitener, Baoli Zhu, D.N. Cooper, Pieter de Jong, Emmanouil T. Dermitzakis, Evan E. Eichler, Paul Flicek, Nick Goldman, Nicholas I. Mundy, Zemin Ning, Duncan T. Odom, Chris P. Ponting, Michael A. Quail, Oliver A. Ryder, Stephen M. J. Searle, Wesley C. Warren, Richard K. Wilson, Mikkel Heide Schierup, Jane Rogers, Chris Tyler‐Smith, Richard Durbin - Nature 2012 cited by 814

  17. Genome sequencing of normal cells reveals developmental lineages and mutational processes

    Authors: Sam Behjati, Meritxell Huch, Ruben van Boxtel, Wouter R. Karthaus, David C. Wedge, Asif U. Tamuri, Iñigo Martincorena, Mia Petljak, Ludmil B. Alexandrov, Gunes Gundem, Patrick Tarpey, Sophie Roerink, Joyce Blokker, Mark Maddison, Laura Mudie, Ben Robinson, Serena Nik‐Zainal, Peter J. Campbell, Nick Goldman, Marc van de Wetering, Edwin Cuppen, Hans Clevers, Michael R. Stratton - Nature 2014 cited by 373

  18. Genomic reconstruction of the SARS-CoV-2 epidemic in England

    Authors: Harald Vöhringer, Theo Sanderson, Matthew Sinnott, Nicola De Maio, Thuy Nguyen, Richard Goater, Frank Schwach, Ian Harrison, Joel Hellewell, Cristina V. Ariani, Sónia Gonçalves, David K. Jackson, Ian Johnston, Alexander W. Jung, Callum Saint, John Sillitoe, Maria Suciu, Nick Goldman, Jasmina Panovska‐Griffiths, Irina Abnizova, Louise Aigrain, Alex Alderton, Mozam Ali, Laura Allen, Roberto Amato, Ralph Anderson, Cristina V. Ariani, Siobhan Austin-Guest, Sendu Bala, Jeffrey C. Barrett, Andrew R. Bassett, Kristina Battleday, James R. Beal, Mathew A. Beale, Charlotte Beaver, Sam Bellany, Tristram Bellerby, Katie Bellis, Duncan Berger, Matthew Berriman, Emma Betteridge, Paul Bevan, Simon Binley, Jason Bishop, Kirsty Blackburn, James Bonfield, Nick Boughton, Sam Bowker, Timothy Brendler-Spaeth, Iraad F. Bronner, Tanya Brooklyn, Sarah K. Buddenborg, R.L. Bush, Catarina Caetano, Alex Cagan, Nicola Carter, Joanna Cartwright, Tiago Monteiro, Liz Chapman, Tracey-Jane Chillingworth, Peter Clapham, Richard Clark, Adrian Clarke, Catriona Clarke, Daryl Cole, Elizabeth Cook, Maria Coppola, Linda Cornell, Clare Cornwell, Craig Corton, Abby Crackett, Alison Cranage, Harriet Craven, Sarah Craw, Mark Crawford, Tim Cutts, Monika Dabrowska, Matt Davies, Robert M. Davies, Joseph Dawson, Callum Day, Aiden Densem, Thomas Dibling, Cat Dockree, D. C. Dodd, Sunil Kumar Dogga, Matthew J. Dorman, Gordon Dougan, Martin Dougherty, Alexander Dove, Lucy Drummond, Eleanor Drury, Monika Dudek, Jillian Durham, Laura Durrant, Elizabeth Easthope, Sabine Eckert, Peter Ellis, Ben W. Farr, Michael Fenton and 917 more - Nature 2021 cited by 119

  19. webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser

    Authors: Ari Löytynoja, Nick Goldman - BMC Bioinformatics, BMC Bioinform. 2010 cited by 465

  20. Transcriptional diversity during lineage commitment of human blood progenitors

    Authors: Lu Chen, Myrto Kostadima, Joost H.A. Martens, Giovanni Canu, Sara P. Garcia, Ernest Turro, Kate Downes, Iain C. Macaulay, Ewa Bielczyk-Maczyńska, S. Coe, Samantha Farrow, Pawan Poudel, Frances Burden, Sjoert B.G. Jansen, William J. Astle, Antony Attwood, Tadbir K. Bariana, Bernard de Bono, Alessandra Breschi, John C. Chambers, Fizzah Choudry, Laura Clarke, Paul Coupland, Martijn van der Ent, Wendy N. Erber, Joop H. Jansen, Rémi Favier, Matthew Fenech, Nicola Foad, Kathleen Freson, Chris Van Geet, Keith Gomez, Roderic Guigó, Daniel J. Hampshire, Anne M. Kelly, Hindrik H. D. Kerstens, Jaspal S. Kooner, Michael Laffan, Claire Lentaigne, Charlotte Labalette, Tiphaine Martin, Stuart Meacham, Andrew Mumford, Sylvia Nürnberg, Emilio Palumbo, Bert A. van der Reijden, David Richardson, Stephen‐John Sammut, Greg Slodkowicz, Asif U. Tamuri, Louella Vasquez, Katrin Voß, Stephen Watt, Sarah K. Westbury, Paul Flicek, Remco Loos, Nick Goldman, Paul Bertone, Randy J. Read, Sylvia Richardson, Ana Cvejic, Nicole Soranzo, Willem H. Ouwehand, Hendrik G. Stunnenberg, Mattia Frontini, Augusto Rendon - Science 2014 cited by 311

  21. Stability of SARS-CoV-2 phylogenies

    Authors: Yatish Turakhia, Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R. Walker, Angie S. Hinrichs, Jason D. Fernandes, Rui Borges, Greg Slodkowicz, Lukas Weilguny, David Haussler, Nick Goldman, Russell Corbett‐Detig - PLoS Genetics 2020 cited by 133

  22. Alignment Modulates Ancestral Sequence Reconstruction Accuracy

    Authors: Ricardo A. Vialle, Asif U. Tamuri, Nick Goldman - Molecular Biology and Evolution 2018 cited by 93

  23. Detection of hidden antibiotic resistance through real-time genomics

    Authors: Ela Sauerborn, Nancy Eliana Corredor Pinzón, Tim Reska, Albert Perlas, Samir V. F. Atum, Nick Goldman, Nina Wantia, Clarissa Prazeres da Costa, Ebenezer Foster-Nyarko, Lara Urban - Nature Communications 2024 cited by 53

  24. Want to track pandemic variants faster? Fix the bioinformatics bottleneck

    Authors: Emma B. Hodcroft, Nicola De Maio, Robert Lanfear, Duncan MacCannell, Bùi Quang Minh, Heiko A. Schmidt, Alexandros Stamatakis, Nick Goldman, Christophe Dessimoz - Nature 2021 cited by 115